RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 PCDHB9Q9Y5E1 797 aa6.22□□□□□ -1.41
VPS13D-206ENST00000476045 GTF3C3Q9Y5Q9 886 aa6.22□□□□□ -1.41
VPS13D-206ENST00000476045 PTPRUQ92729 1446 aa6.22□□□□□ -1.41
VPS13D-206ENST00000476045 MARF1Q9Y4F3 1742 aaKnown RBP6.22□□□□□ -1.41
VPS13D-206ENST00000476045 ANKRD30BQ9BXX2 1392 aa6.21□□□□□ -1.41
VPS13D-206ENST00000476045 ATF3P18847 181 aa6.21□□□□□ -1.42
VPS13D-206ENST00000476045 ITGAEP38570 1179 aa6.21□□□□□ -1.42
VPS13D-206ENST00000476045 ZNF326Q5BKZ1 582 aaKnown RBP6.21□□□□□ -1.42
VPS13D-206ENST00000476045 RNF20Q5VTR2 975 aa6.21□□□□□ -1.42
VPS13D-206ENST00000476045 C14orf37Q86TY3 774 aa6.21□□□□□ -1.42
VPS13D-206ENST00000476045 RNF217Q8TC41 542 aa6.21□□□□□ -1.42
VPS13D-206ENST00000476045 C19orf44Q9H6X5 657 aa6.21□□□□□ -1.42
VPS13D-206ENST00000476045 SLAIN2Q9P270 581 aa6.21□□□□□ -1.42
VPS13D-206ENST00000476045 SETD5Q9C0A6 1442 aa6.21□□□□□ -1.42
VPS13D-206ENST00000476045 FMN2Q9NZ56 1722 aa6.21□□□□□ -1.42
VPS13D-206ENST00000476045 CDK12Q9NYV4 1490 aaPredicted RBP6.21□□□□□ -1.42
VPS13D-206ENST00000476045 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.2□□□□□ -1.42
VPS13D-206ENST00000476045 ADGRB2O60241 1585 aa6.2□□□□□ -1.42
VPS13D-206ENST00000476045 PIK3C2GO75747 1445 aa6.2□□□□□ -1.42
VPS13D-206ENST00000476045 SPATA31E1Q6ZUB1 1445 aa6.2□□□□□ -1.42
VPS13D-206ENST00000476045 TRAK2O60296 914 aa6.2□□□□□ -1.42
VPS13D-206ENST00000476045 PPFIA3O75145 1194 aa6.2□□□□□ -1.42
VPS13D-206ENST00000476045 PTGIRP43119 386 aa6.2□□□□□ -1.42
VPS13D-206ENST00000476045 CTSOP43234 321 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-206ENST00000476045 TMEM132AQ24JP5 1023 aa6.2□□□□□ -1.42
VPS13D-206ENST00000476045 FOXD4L5Q5VV16 416 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-206ENST00000476045 AGBL1Q96MI9 1066 aa6.2□□□□□ -1.42
VPS13D-206ENST00000476045 LRP6O75581 1613 aa6.2□□□□□ -1.42
VPS13D-206ENST00000476045 SLC35F4A4IF30 521 aa6.19□□□□□ -1.42
VPS13D-206ENST00000476045 GMPRP36959 345 aa6.19□□□□□ -1.42
VPS13D-206ENST00000476045 INSM1Q01101 510 aaPredicted RBP6.19□□□□□ -1.42
VPS13D-206ENST00000476045 CC2D2BQ6DHV5 1058 aa6.19□□□□□ -1.42
VPS13D-206ENST00000476045 ERICH6Q7L0X2 663 aa6.19□□□□□ -1.42
VPS13D-206ENST00000476045 PHTF2Q8N3S3 785 aa6.19□□□□□ -1.42
VPS13D-206ENST00000476045 NANOS1Q8WY41 292 aaKnown RBP6.19□□□□□ -1.42
VPS13D-206ENST00000476045 AMOTL2Q9Y2J4 779 aa6.19□□□□□ -1.42
VPS13D-206ENST00000476045 NRXN1Q9ULB1 1477 aa6.19□□□□□ -1.42
VPS13D-206ENST00000476045 ITSN1Q15811 1721 aa6.19□□□□□ -1.42
VPS13D-206ENST00000476045 METP08581 1390 aa6.18□□□□□ -1.42
VPS13D-206ENST00000476045 C1orf167Q5SNV9 1468 aa6.18□□□□□ -1.42
VPS13D-206ENST00000476045 GPC1P35052 558 aa6.18□□□□□ -1.42
VPS13D-206ENST00000476045 PTSQ03393 145 aa6.18□□□□□ -1.42
VPS13D-206ENST00000476045 INSM2Q96T92 566 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-206ENST00000476045 CYLDQ9NQC7 956 aa6.18□□□□□ -1.42
VPS13D-206ENST00000476045 DLC1Q96QB1 1528 aa6.18□□□□□ -1.42
VPS13D-206ENST00000476045 ABCA3Q99758 1704 aa6.17□□□□□ -1.42
VPS13D-206ENST00000476045 KIAA1210Q9ULL0 1709 aa6.17□□□□□ -1.42
VPS13D-206ENST00000476045 SENP3-EIF4A1A0A087X0R7 540 aa6.17□□□□□ -1.42
VPS13D-206ENST00000476045 SCTRP47872 440 aa6.17□□□□□ -1.42
VPS13D-206ENST00000476045 VEGFBP49765 207 aa6.17□□□□□ -1.42
VPS13D-206ENST00000476045 RNF144AP50876 292 aaPredicted RBP6.17□□□□□ -1.42
VPS13D-206ENST00000476045 RELBQ01201 579 aa6.17□□□□□ -1.42
VPS13D-206ENST00000476045 OSBPL3Q9H4L5 887 aa6.17□□□□□ -1.42
VPS13D-206ENST00000476045 PRM3Q9NNZ6 103 aa6.17□□□□□ -1.42
VPS13D-206ENST00000476045 CEP126Q9P2H0 1117 aa6.17□□□□□ -1.42
VPS13D-206ENST00000476045 STK17AQ9UEE5 414 aa6.17□□□□□ -1.42
VPS13D-206ENST00000476045 EP400Q96L91 3159 aa6.16□□□□□ -1.42
VPS13D-206ENST00000476045 ATP5J2-PTCD1G3V325 749 aa6.16□□□□□ -1.42
VPS13D-206ENST00000476045 RAB15P59190 212 aa6.16□□□□□ -1.42
VPS13D-206ENST00000476045 ZNF772Q68DY9 489 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-206ENST00000476045 BRINP3Q76B58 766 aa6.16□□□□□ -1.42
VPS13D-206ENST00000476045 CCDC85AQ96PX6 553 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-206ENST00000476045 LRPPRCP42704 1394 aaKnown RBP6.16□□□□□ -1.42
VPS13D-206ENST00000476045 EIF3AQ14152 1382 aaKnown RBP6.16□□□□□ -1.42
VPS13D-206ENST00000476045 PNPLA6Q8IY17 1366 aa6.16□□□□□ -1.42
VPS13D-206ENST00000476045 ROBO2Q9HCK4 1378 aa6.16□□□□□ -1.42
VPS13D-206ENST00000476045 NWD2Q9ULI1 1742 aa6.16□□□□□ -1.42
VPS13D-206ENST00000476045 USP32Q8NFA0 1604 aa6.15□□□□□ -1.42
VPS13D-206ENST00000476045 SOX11P35716 441 aa6.15□□□□□ -1.42
VPS13D-206ENST00000476045 EIF4G2P78344 907 aaKnown RBP eCLIP6.15□□□□□ -1.42
VPS13D-206ENST00000476045 CLN3Q13286 438 aa6.15□□□□□ -1.42
VPS13D-206ENST00000476045 WASHC4Q2M389 1173 aa6.15□□□□□ -1.42
VPS13D-206ENST00000476045 CYP2U1Q7Z449 544 aa6.15□□□□□ -1.42
VPS13D-206ENST00000476045 CCDC155Q8N6L0 562 aa6.15□□□□□ -1.42
VPS13D-206ENST00000476045 HRH3Q9Y5N1 445 aa6.15□□□□□ -1.42
VPS13D-206ENST00000476045 ARHGEF28Q8N1W1 1705 aaKnown RBP6.15□□□□□ -1.42
VPS13D-206ENST00000476045 YTHDC2Q9H6S0 1430 aaKnown RBP6.15□□□□□ -1.43
VPS13D-206ENST00000476045 PXDNQ92626 1479 aa6.15□□□□□ -1.43
VPS13D-206ENST00000476045 MEX3CQ5U5Q3 659 aaKnown RBP6.14□□□□□ -1.43
VPS13D-206ENST00000476045 LRRC59Q96AG4 307 aaKnown RBP6.14□□□□□ -1.43
VPS13D-206ENST00000476045 ZNF395Q9H8N7 513 aaPredicted RBP6.14□□□□□ -1.43
VPS13D-206ENST00000476045 GDPD2Q9HCC8 539 aa6.14□□□□□ -1.43
VPS13D-206ENST00000476045 POLMQ9NP87 494 aaPredicted RBP6.14□□□□□ -1.43
VPS13D-206ENST00000476045 COG6Q9Y2V7 657 aa6.14□□□□□ -1.43
VPS13D-206ENST00000476045 PCDHB11Q9Y5F2 797 aa6.14□□□□□ -1.43
VPS13D-206ENST00000476045 NPHP3Q7Z494 1330 aa6.14□□□□□ -1.43
VPS13D-206ENST00000476045 ABCC11Q96J66 1382 aa6.14□□□□□ -1.43
VPS13D-206ENST00000476045 ANKARQ7Z5J8 1434 aa6.14□□□□□ -1.43
VPS13D-206ENST00000476045 ADGRB1O14514 1584 aa6.14□□□□□ -1.43
VPS13D-206ENST00000476045 PLCH1Q4KWH8 1693 aa6.14□□□□□ -1.43
VPS13D-206ENST00000476045 SPATA31C2B4DYI2 1134 aa6.13□□□□□ -1.43
VPS13D-206ENST00000476045 ITGA6P23229 1130 aa6.13□□□□□ -1.43
VPS13D-206ENST00000476045 CCER1Q8TC90 406 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-206ENST00000476045 RGS17Q9UGC6 210 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-206ENST00000476045 RAB3GAP2Q9H2M9 1393 aa6.13□□□□□ -1.43
VPS13D-206ENST00000476045 TOPAZ1Q8N9V7 1692 aa6.13□□□□□ -1.43
VPS13D-206ENST00000476045 RGPD8O14715 1765 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-206ENST00000476045 A0A1W2PRU2 124 aa6.12□□□□□ -1.43
VPS13D-206ENST00000476045 FIGNL2A6NMB9 653 aa6.12□□□□□ -1.43
VPS13D-206ENST00000476045 GNRH1P01148 92 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms