RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 NMRK2Q9NPI5 230 aa20.19■□□□□ 0.82
CPSF3-203ENST00000475482 CHPF2Q9P2E5 772 aa20.19■□□□□ 0.82
CPSF3-203ENST00000475482 SLC10A5Q5PT55 438 aa20.18■□□□□ 0.82
CPSF3-203ENST00000475482 DBF4Q9UBU7 674 aaPredicted RBP20.18■□□□□ 0.82
CPSF3-203ENST00000475482 ALDH1B1P30837 517 aa20.17■□□□□ 0.82
CPSF3-203ENST00000475482 HOXA10P31260 410 aaPredicted RBP20.17■□□□□ 0.82
CPSF3-203ENST00000475482 HSP90AB3PQ58FF7 597 aa20.17■□□□□ 0.82
CPSF3-203ENST00000475482 PPP1R42Q7Z4L9 355 aa20.17■□□□□ 0.82
CPSF3-203ENST00000475482 KDM2BQ8NHM5 1336 aa20.17■□□□□ 0.82
CPSF3-203ENST00000475482 AIMP1Q12904 312 aaKnown RBP20.16■□□□□ 0.82
CPSF3-203ENST00000475482 TCIRG1Q13488 830 aa20.16■□□□□ 0.82
CPSF3-203ENST00000475482 TAOK3Q9H2K8 898 aa20.16■□□□□ 0.82
CPSF3-203ENST00000475482 ZNF219Q9P2Y4 722 aaPredicted RBP20.16■□□□□ 0.82
CPSF3-203ENST00000475482 RNF123Q5XPI4 1314 aa20.16■□□□□ 0.82
CPSF3-203ENST00000475482 SNED1Q8TER0 1413 aa20.16■□□□□ 0.82
CPSF3-203ENST00000475482 TOMM70O94826 608 aa20.15■□□□□ 0.82
CPSF3-203ENST00000475482 NLRP10Q86W26 655 aa20.15■□□□□ 0.82
CPSF3-203ENST00000475482 PLBD2Q8NHP8 589 aa20.15■□□□□ 0.82
CPSF3-203ENST00000475482 SENP3-EIF4A1A0A087X0R7 540 aa20.14■□□□□ 0.81
CPSF3-203ENST00000475482 GLTPD2A6NH11 291 aa20.14■□□□□ 0.81
CPSF3-203ENST00000475482 CCDC93Q567U6 631 aa20.14■□□□□ 0.81
CPSF3-203ENST00000475482 WWC1Q8IX03 1113 aa20.14■□□□□ 0.81
CPSF3-203ENST00000475482 UTP14AQ9BVJ6 771 aaKnown RBP20.14■□□□□ 0.81
CPSF3-203ENST00000475482 HYPKQ9NX55 129 aa20.14■□□□□ 0.81
CPSF3-203ENST00000475482 ANKRD13DQ6ZTN6 518 aa20.13■□□□□ 0.81
CPSF3-203ENST00000475482 C3orf67Q6ZVT6 689 aa20.13■□□□□ 0.81
CPSF3-203ENST00000475482 C8orf58Q8NAV2 365 aa20.13■□□□□ 0.81
CPSF3-203ENST00000475482 CRAMP1Q96RY5 1269 aa20.12■□□□□ 0.81
CPSF3-203ENST00000475482 SALL2Q9Y467 1007 aaPredicted RBP20.12■□□□□ 0.81
CPSF3-203ENST00000475482 LAMB2P55268 1798 aa20.12■□□□□ 0.81
CPSF3-203ENST00000475482 CEP350Q5VT06 3117 aa20.11■□□□□ 0.81
CPSF3-203ENST00000475482 OLFM4Q6UX06 510 aa20.11■□□□□ 0.81
CPSF3-203ENST00000475482 RTKN2Q8IZC4 609 aa20.11■□□□□ 0.81
CPSF3-203ENST00000475482 ISCA1Q9BUE6 129 aa20.11■□□□□ 0.81
CPSF3-203ENST00000475482 RRAGCQ9HB90 399 aa20.11■□□□□ 0.81
CPSF3-203ENST00000475482 WDR90Q96KV7 1748 aa20.1■□□□□ 0.81
CPSF3-203ENST00000475482 IL16Q14005 1332 aa20.1■□□□□ 0.81
CPSF3-203ENST00000475482 HSPA6P17066 643 aa20.1■□□□□ 0.81
CPSF3-203ENST00000475482 FKBP4Q02790 459 aaKnown RBP eCLIP20.1■□□□□ 0.81
CPSF3-203ENST00000475482 TRIM28Q13263 835 aaKnown RBP20.1■□□□□ 0.81
CPSF3-203ENST00000475482 RBM46Q8TBY0 533 aaKnown RBP20.1■□□□□ 0.81
CPSF3-203ENST00000475482 NLRP3Q96P20 1036 aa20.1■□□□□ 0.81
CPSF3-203ENST00000475482 ELL2O00472 640 aaPredicted RBP20.09■□□□□ 0.81
CPSF3-203ENST00000475482 CC2D2BQ6DHV5 1058 aa20.09■□□□□ 0.81
CPSF3-203ENST00000475482 TSPYL6Q8N831 410 aa20.09■□□□□ 0.81
CPSF3-203ENST00000475482 RPGRQ92834 1020 aaKnown RBP20.09■□□□□ 0.81
CPSF3-203ENST00000475482 POTECB2RU33 542 aa20.08■□□□□ 0.81
CPSF3-203ENST00000475482 GOLGA2Q08379 1002 aa20.08■□□□□ 0.81
CPSF3-203ENST00000475482 SYNE4Q8N205 404 aa20.08■□□□□ 0.81
CPSF3-203ENST00000475482 RBM17Q96I25 401 aaKnown RBP20.08■□□□□ 0.81
CPSF3-203ENST00000475482 PSMD1Q99460 953 aa20.08■□□□□ 0.81
CPSF3-203ENST00000475482 DDX60Q8IY21 1712 aaKnown RBP20.07■□□□□ 0.8
CPSF3-203ENST00000475482 SH3TC1Q8TE82 1336 aa20.07■□□□□ 0.8
CPSF3-203ENST00000475482 GRIPAP1Q4V328 841 aa20.07■□□□□ 0.8
CPSF3-203ENST00000475482 DPY19L2Q6NUT2 758 aa20.07■□□□□ 0.8
CPSF3-203ENST00000475482 CHMP4AQ9BY43 222 aa20.07■□□□□ 0.8
CPSF3-203ENST00000475482 PHAXQ9H814 394 aaKnown RBP20.07■□□□□ 0.8
CPSF3-203ENST00000475482 ZNF521Q96K83 1311 aa20.06■□□□□ 0.8
CPSF3-203ENST00000475482 VEGFAP15692 232 aaPredicted RBP20.06■□□□□ 0.8
CPSF3-203ENST00000475482 TSR2Q969E8 191 aaKnown RBP20.06■□□□□ 0.8
CPSF3-203ENST00000475482 TRMT112Q9UI30 125 aaKnown RBP20.06■□□□□ 0.8
CPSF3-203ENST00000475482 HCLS1P14317 486 aaPredicted RBP20.05■□□□□ 0.8
CPSF3-203ENST00000475482 CCDC30Q5VVM6 783 aa20.05■□□□□ 0.8
CPSF3-203ENST00000475482 ZNF277Q9NRM2 450 aaPredicted RBP20.05■□□□□ 0.8
CPSF3-203ENST00000475482 CACNA1FO60840 1977 aa20.04■□□□□ 0.8
CPSF3-203ENST00000475482 ATP5J2-PTCD1G3V325 749 aa20.04■□□□□ 0.8
CPSF3-203ENST00000475482 FSTL1Q12841 308 aa20.04■□□□□ 0.8
CPSF3-203ENST00000475482 WDR63Q8IWG1 891 aa20.04■□□□□ 0.8
CPSF3-203ENST00000475482 TAF1P21675 1872 aa20.03■□□□□ 0.8
CPSF3-203ENST00000475482 PPEF1O14829 653 aaPredicted RBP20.03■□□□□ 0.8
CPSF3-203ENST00000475482 SLC51AQ86UW1 340 aa20.03■□□□□ 0.8
CPSF3-203ENST00000475482 C16orf71Q8IYS4 520 aaPredicted RBP20.03■□□□□ 0.8
CPSF3-203ENST00000475482 ATP6V0A2Q9Y487 856 aa20.03■□□□□ 0.8
CPSF3-203ENST00000475482 ABCC4O15439 1325 aa20.02■□□□□ 0.8
CPSF3-203ENST00000475482 E9PSI1 815 aa20.02■□□□□ 0.8
CPSF3-203ENST00000475482 IARSP41252 1262 aaKnown RBP20.02■□□□□ 0.8
CPSF3-203ENST00000475482 RIC3Q7Z5B4 369 aa20.02■□□□□ 0.8
CPSF3-203ENST00000475482 SCN4AP35499 1836 aa20.02■□□□□ 0.79
CPSF3-203ENST00000475482 COL4A5P29400 1685 aa20.01■□□□□ 0.79
CPSF3-203ENST00000475482 FZD9O00144 591 aa20.01■□□□□ 0.79
CPSF3-203ENST00000475482 BBOX1O75936 387 aa20.01■□□□□ 0.79
CPSF3-203ENST00000475482 DDNO94850 711 aaPredicted RBP20.01■□□□□ 0.79
CPSF3-203ENST00000475482 SF3B3Q15393 1217 aaKnown RBP20.01■□□□□ 0.79
CPSF3-203ENST00000475482 FAM89AQ96GI7 184 aa20.01■□□□□ 0.79
CPSF3-203ENST00000475482 L3MBTL3Q96JM7 780 aaPredicted RBP20.01■□□□□ 0.79
CPSF3-203ENST00000475482 TWISTNBQ3B726 338 aaPredicted RBP20■□□□□ 0.79
CPSF3-203ENST00000475482 FANCIQ9NVI1 1328 aa20■□□□□ 0.79
CPSF3-203ENST00000475482 APLP1P51693 650 aa19.99■□□□□ 0.79
CPSF3-203ENST00000475482 GRAPQ13588 217 aa19.99■□□□□ 0.79
CPSF3-203ENST00000475482 SP8Q8IXZ3 490 aa19.99■□□□□ 0.79
CPSF3-203ENST00000475482 CCDC191Q8NCU4 936 aa19.99■□□□□ 0.79
CPSF3-203ENST00000475482 SMC1BQ8NDV3 1235 aa19.99■□□□□ 0.79
CPSF3-203ENST00000475482 GRAPLQ8TC17 118 aaPredicted RBP19.99■□□□□ 0.79
CPSF3-203ENST00000475482 METTL22Q9BUU2 404 aaPredicted RBP19.99■□□□□ 0.79
CPSF3-203ENST00000475482 RTFDC1Q9BY42 306 aaPredicted RBP19.99■□□□□ 0.79
CPSF3-203ENST00000475482 ZNF541Q9H0D2 1346 aa19.99■□□□□ 0.79
CPSF3-203ENST00000475482 LRRC37AA6NMS7 1700 aa19.99■□□□□ 0.79
CPSF3-203ENST00000475482 SLFN5Q08AF3 891 aa19.98■□□□□ 0.79
CPSF3-203ENST00000475482 DDX46Q7L014 1031 aaKnown RBP19.98■□□□□ 0.79
CPSF3-203ENST00000475482 ZBTB38Q8NAP3 1195 aaPredicted RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms