RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 C3orf67Q6ZVT6 689 aa24.57■■□□□ 1.52
CCDC88B-206ENST00000473405 ZNF277Q9NRM2 450 aaPredicted RBP24.57■■□□□ 1.52
CCDC88B-206ENST00000473405 LAS1LQ9Y4W2 734 aaKnown RBP24.57■■□□□ 1.52
CCDC88B-206ENST00000473405 DDNO94850 711 aaPredicted RBP24.56■■□□□ 1.52
CCDC88B-206ENST00000473405 PARP10Q53GL7 1025 aa24.56■■□□□ 1.52
CCDC88B-206ENST00000473405 COPS6Q7L5N1 327 aa24.56■■□□□ 1.52
CCDC88B-206ENST00000473405 RTKN2Q8IZC4 609 aa24.56■■□□□ 1.52
CCDC88B-206ENST00000473405 XAGE3Q8WTP9 111 aa24.56■■□□□ 1.52
CCDC88B-206ENST00000473405 COL4A5P29400 1685 aa24.56■■□□□ 1.52
CCDC88B-206ENST00000473405 PPP1R42Q7Z4L9 355 aa24.55■■□□□ 1.52
CCDC88B-206ENST00000473405 SLC51AQ86UW1 340 aa24.55■■□□□ 1.52
CCDC88B-206ENST00000473405 DDX21Q9NR30 783 aaKnown RBP eCLIP24.55■■□□□ 1.52
CCDC88B-206ENST00000473405 RPGRQ92834 1020 aaKnown RBP24.54■■□□□ 1.52
CCDC88B-206ENST00000473405 CHPF2Q9P2E5 772 aa24.54■■□□□ 1.52
CCDC88B-206ENST00000473405 DDX60Q8IY21 1712 aaKnown RBP24.54■■□□□ 1.52
CCDC88B-206ENST00000473405 HOXB7P09629 217 aa24.53■■□□□ 1.52
CCDC88B-206ENST00000473405 AIMP1Q12904 312 aaKnown RBP24.53■■□□□ 1.52
CCDC88B-206ENST00000473405 CFAP44Q96MT7 982 aa24.53■■□□□ 1.52
CCDC88B-206ENST00000473405 ZNF541Q9H0D2 1346 aa24.53■■□□□ 1.52
CCDC88B-206ENST00000473405 PSMD1Q99460 953 aa24.52■■□□□ 1.52
CCDC88B-206ENST00000473405 UTP14AQ9BVJ6 771 aaKnown RBP24.52■■□□□ 1.52
CCDC88B-206ENST00000473405 IARSP41252 1262 aaKnown RBP24.51■■□□□ 1.51
CCDC88B-206ENST00000473405 HDGFL1Q5TGJ6 251 aa24.51■■□□□ 1.51
CCDC88B-206ENST00000473405 NLRP10Q86W26 655 aa24.51■■□□□ 1.51
CCDC88B-206ENST00000473405 L3MBTL3Q96JM7 780 aaPredicted RBP24.51■■□□□ 1.51
CCDC88B-206ENST00000473405 CRAMP1Q96RY5 1269 aa24.51■■□□□ 1.51
CCDC88B-206ENST00000473405 MBIPQ9NS73 344 aa24.51■■□□□ 1.51
CCDC88B-206ENST00000473405 RNF123Q5XPI4 1314 aa24.51■■□□□ 1.51
CCDC88B-206ENST00000473405 ADAMTSL1Q8N6G6 1762 aa24.5■■□□□ 1.51
CCDC88B-206ENST00000473405 TAF1P21675 1872 aa24.5■■□□□ 1.51
CCDC88B-206ENST00000473405 APAF1O14727 1248 aa24.5■■□□□ 1.51
CCDC88B-206ENST00000473405 ZNF853P0CG23 659 aa24.5■■□□□ 1.51
CCDC88B-206ENST00000473405 SLC10A5Q5PT55 438 aa24.5■■□□□ 1.51
CCDC88B-206ENST00000473405 SYNE4Q8N205 404 aa24.5■■□□□ 1.51
CCDC88B-206ENST00000473405 HSP90AB3PQ58FF7 597 aa24.49■■□□□ 1.51
CCDC88B-206ENST00000473405 RBM17Q96I25 401 aaKnown RBP24.49■■□□□ 1.51
CCDC88B-206ENST00000473405 PPEF1O14829 653 aaPredicted RBP24.48■■□□□ 1.51
CCDC88B-206ENST00000473405 POTEIP0CG38 1075 aa24.48■■□□□ 1.51
CCDC88B-206ENST00000473405 POTEJP0CG39 1038 aa24.48■■□□□ 1.51
CCDC88B-206ENST00000473405 TCIRG1Q13488 830 aa24.48■■□□□ 1.51
CCDC88B-206ENST00000473405 CC2D2BQ6DHV5 1058 aa24.48■■□□□ 1.51
CCDC88B-206ENST00000473405 KLRG1Q96E93 195 aa24.48■■□□□ 1.51
CCDC88B-206ENST00000473405 NLRP3Q96P20 1036 aa24.48■■□□□ 1.51
CCDC88B-206ENST00000473405 FZD9O00144 591 aa24.47■■□□□ 1.51
CCDC88B-206ENST00000473405 DUSP27Q5VZP5 1158 aa24.47■■□□□ 1.51
CCDC88B-206ENST00000473405 DBF4Q9UBU7 674 aaPredicted RBP24.47■■□□□ 1.51
CCDC88B-206ENST00000473405 LRRC37AA6NMS7 1700 aa24.47■■□□□ 1.51
CCDC88B-206ENST00000473405 ABCC4O15439 1325 aa24.46■■□□□ 1.51
CCDC88B-206ENST00000473405 LTBP1Q14766 1721 aa24.45■■□□□ 1.5
CCDC88B-206ENST00000473405 IQCA1LA6NCM1 817 aa24.45■■□□□ 1.5
CCDC88B-206ENST00000473405 PLBD2Q8NHP8 589 aa24.45■■□□□ 1.5
CCDC88B-206ENST00000473405 IFT57Q9NWB7 429 aa24.45■■□□□ 1.5
CCDC88B-206ENST00000473405 HCLS1P14317 486 aaPredicted RBP24.44■■□□□ 1.5
CCDC88B-206ENST00000473405 GRIPAP1Q4V328 841 aa24.44■■□□□ 1.5
CCDC88B-206ENST00000473405 CCDC184Q52MB2 194 aa24.44■■□□□ 1.5
CCDC88B-206ENST00000473405 CHADLQ6NUI6 762 aa24.44■■□□□ 1.5
CCDC88B-206ENST00000473405 TAF1DQ9H5J8 278 aaPredicted RBP24.44■■□□□ 1.5
CCDC88B-206ENST00000473405 TRMT112Q9UI30 125 aaKnown RBP24.44■■□□□ 1.5
CCDC88B-206ENST00000473405 TCERG1O14776 1098 aaKnown RBP24.43■■□□□ 1.5
CCDC88B-206ENST00000473405 JMYQ8N9B5 988 aa24.43■■□□□ 1.5
CCDC88B-206ENST00000473405 SH3TC1Q8TE82 1336 aa24.42■■□□□ 1.5
CCDC88B-206ENST00000473405 ANKRD13DQ6ZTN6 518 aa24.42■■□□□ 1.5
CCDC88B-206ENST00000473405 ZNF428Q96B54 188 aa24.42■■□□□ 1.5
CCDC88B-206ENST00000473405 ISCA1Q9BUE6 129 aa24.42■■□□□ 1.5
CCDC88B-206ENST00000473405 HYPKQ9NX55 129 aa24.42■■□□□ 1.5
CCDC88B-206ENST00000473405 ATP6V0A2Q9Y487 856 aa24.42■■□□□ 1.5
CCDC88B-206ENST00000473405 COL4A1P02462 1669 aa24.42■■□□□ 1.5
CCDC88B-206ENST00000473405 GNAI1P63096 354 aa24.41■■□□□ 1.5
CCDC88B-206ENST00000473405 CALD1Q05682 793 aaKnown RBP24.41■■□□□ 1.5
CCDC88B-206ENST00000473405 JDP2Q8WYK2 163 aa24.41■■□□□ 1.5
CCDC88B-206ENST00000473405 DUOX1Q9NRD9 1551 aa24.41■■□□□ 1.5
CCDC88B-206ENST00000473405 LDHDQ86WU2 507 aa24.4■■□□□ 1.5
CCDC88B-206ENST00000473405 GPC2Q8N158 579 aa24.4■■□□□ 1.5
CCDC88B-206ENST00000473405 HACL1Q9UJ83 578 aa24.39■■□□□ 1.49
CCDC88B-206ENST00000473405 ATP5J2-PTCD1G3V325 749 aa24.38■■□□□ 1.49
CCDC88B-206ENST00000473405 LARGE2Q8N3Y3 721 aa24.38■■□□□ 1.49
CCDC88B-206ENST00000473405 C8orf58Q8NAV2 365 aa24.37■■□□□ 1.49
CCDC88B-206ENST00000473405 PASKQ96RG2 1323 aa24.36■■□□□ 1.49
CCDC88B-206ENST00000473405 ELL2O00472 640 aaPredicted RBP24.36■■□□□ 1.49
CCDC88B-206ENST00000473405 BBOX1O75936 387 aa24.36■■□□□ 1.49
CCDC88B-206ENST00000473405 EPHX2P34913 555 aa24.36■■□□□ 1.49
CCDC88B-206ENST00000473405 FAM89AQ96GI7 184 aa24.36■■□□□ 1.49
CCDC88B-206ENST00000473405 RTFDC1Q9BY42 306 aaPredicted RBP24.36■■□□□ 1.49
CCDC88B-206ENST00000473405 PHAXQ9H814 394 aaKnown RBP24.36■■□□□ 1.49
CCDC88B-206ENST00000473405 EIF6P56537 245 aaKnown RBP24.35■■□□□ 1.49
CCDC88B-206ENST00000473405 GRAPQ13588 217 aa24.35■■□□□ 1.49
CCDC88B-206ENST00000473405 AOC3Q16853 763 aa24.35■■□□□ 1.49
CCDC88B-206ENST00000473405 DDX46Q7L014 1031 aaKnown RBP24.35■■□□□ 1.49
CCDC88B-206ENST00000473405 GRAPLQ8TC17 118 aaPredicted RBP24.35■■□□□ 1.49
CCDC88B-206ENST00000473405 PPIP5K2O43314 1243 aa24.34■■□□□ 1.49
CCDC88B-206ENST00000473405 ZEB1P37275 1124 aaPredicted RBP24.34■■□□□ 1.49
CCDC88B-206ENST00000473405 TRIM28Q13263 835 aaKnown RBP24.34■■□□□ 1.49
CCDC88B-206ENST00000473405 EAPPQ56P03 285 aaPredicted RBP24.34■■□□□ 1.49
CCDC88B-206ENST00000473405 SP8Q8IXZ3 490 aa24.34■■□□□ 1.49
CCDC88B-206ENST00000473405 GJA3Q9Y6H8 435 aa24.34■■□□□ 1.49
CCDC88B-206ENST00000473405 NIM1KQ8IY84 436 aa24.33■■□□□ 1.49
CCDC88B-206ENST00000473405 TMX4Q9H1E5 349 aaPredicted RBP24.33■■□□□ 1.49
CCDC88B-206ENST00000473405 CREBZFQ9NS37 354 aa24.33■■□□□ 1.49
CCDC88B-206ENST00000473405 ITGBL1O95965 494 aaPredicted RBP24.32■■□□□ 1.48
CCDC88B-206ENST00000473405 SCNN1DP51172 638 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms