RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 A0A087WZG4 1122 aa23■■□□□ 1.27
VIM-203ENST00000469543 ZNF445P59923 1031 aa23■■□□□ 1.27
VIM-203ENST00000469543 TFCP2Q12800 502 aa23■■□□□ 1.27
VIM-203ENST00000469543 FMNL2Q96PY5 1086 aa23■■□□□ 1.27
VIM-203ENST00000469543 CCDC83Q8IWF9 413 aa23■■□□□ 1.27
VIM-203ENST00000469543 NECAB1Q8N987 351 aa23■■□□□ 1.27
VIM-203ENST00000469543 FSD1Q9BTV5 496 aa23■■□□□ 1.27
VIM-203ENST00000469543 LIMCH1Q9UPQ0 1083 aa23■■□□□ 1.27
VIM-203ENST00000469543 CAMTA1Q9Y6Y1 1673 aa23■■□□□ 1.27
VIM-203ENST00000469543 NBPF26B4DH59 902 aa22.99■■□□□ 1.27
VIM-203ENST00000469543 KCNJ4P48050 445 aa22.99■■□□□ 1.27
VIM-203ENST00000469543 NECTIN1Q15223 517 aa22.99■■□□□ 1.27
VIM-203ENST00000469543 NBPF14Q5TI25 921 aa22.99■■□□□ 1.27
VIM-203ENST00000469543 NBPF10Q6P3W6 841 aaKnown RBP22.99■■□□□ 1.27
VIM-203ENST00000469543 ZNF589Q86UQ0 364 aaPredicted RBP22.99■■□□□ 1.27
VIM-203ENST00000469543 NBPF15Q8N660 670 aa22.99■■□□□ 1.27
VIM-203ENST00000469543 RBM8AQ9Y5S9 174 aaKnown RBP22.99■■□□□ 1.27
VIM-203ENST00000469543 PTPN12Q05209 780 aaKnown RBP22.99■■□□□ 1.27
VIM-203ENST00000469543 CADPS2Q86UW7 1296 aa22.99■■□□□ 1.27
VIM-203ENST00000469543 TCHHQ07283 1943 aa22.99■■□□□ 1.27
VIM-203ENST00000469543 RUFY2Q8WXA3 655 aa22.98■■□□□ 1.27
VIM-203ENST00000469543 DBNLQ9UJU6 430 aaKnown RBP22.98■■□□□ 1.27
VIM-203ENST00000469543 SPATA31A3Q5VYP0 1347 aa22.98■■□□□ 1.27
VIM-203ENST00000469543 RPAP1Q9BWH6 1393 aaPredicted RBP22.98■■□□□ 1.27
VIM-203ENST00000469543 A1BGP04217 495 aa22.98■■□□□ 1.27
VIM-203ENST00000469543 SLFNL1Q499Z3 407 aa22.98■■□□□ 1.27
VIM-203ENST00000469543 TTLL7Q6ZT98 887 aa22.98■■□□□ 1.27
VIM-203ENST00000469543 USP48Q86UV5 1035 aa22.98■■□□□ 1.27
VIM-203ENST00000469543 RNF214Q8ND24 703 aa22.98■■□□□ 1.27
VIM-203ENST00000469543 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.98■■□□□ 1.27
VIM-203ENST00000469543 CHMP3Q9Y3E7 222 aa22.98■■□□□ 1.27
VIM-203ENST00000469543 SYT1P21579 422 aa22.97■■□□□ 1.27
VIM-203ENST00000469543 TOM1L2Q6ZVM7 507 aa22.97■■□□□ 1.27
VIM-203ENST00000469543 TRIM44Q96DX7 344 aaPredicted RBP22.97■■□□□ 1.27
VIM-203ENST00000469543 PDRG1Q9NUG6 133 aa22.97■■□□□ 1.27
VIM-203ENST00000469543 CCDC171Q6TFL3 1326 aa22.97■■□□□ 1.27
VIM-203ENST00000469543 HDAC5Q9UQL6 1122 aa22.97■■□□□ 1.27
VIM-203ENST00000469543 CNPY2Q9Y2B0 182 aa22.97■■□□□ 1.27
VIM-203ENST00000469543 SCN11AQ9UI33 1791 aa22.97■■□□□ 1.27
VIM-203ENST00000469543 RFX5P48382 616 aaPredicted RBP22.96■■□□□ 1.27
VIM-203ENST00000469543 CREB3L3Q68CJ9 461 aa22.96■■□□□ 1.27
VIM-203ENST00000469543 SEC62Q99442 399 aaKnown RBP22.96■■□□□ 1.27
VIM-203ENST00000469543 PRDM11Q9NQV5 511 aa22.96■■□□□ 1.27
VIM-203ENST00000469543 ESPNB1AK53 854 aa22.95■■□□□ 1.27
VIM-203ENST00000469543 ST3GAL1Q11201 340 aa22.95■■□□□ 1.27
VIM-203ENST00000469543 ME3Q16798 604 aa22.95■■□□□ 1.27
VIM-203ENST00000469543 BRINP3Q76B58 766 aa22.95■■□□□ 1.27
VIM-203ENST00000469543 ADAMTS7Q9UKP4 1686 aa22.95■■□□□ 1.26
VIM-203ENST00000469543 EPB41L2O43491 1005 aaKnown RBP22.95■■□□□ 1.26
VIM-203ENST00000469543 LMBR1LQ6UX01 489 aa22.95■■□□□ 1.26
VIM-203ENST00000469543 MAP4K1Q92918 833 aa22.95■■□□□ 1.26
VIM-203ENST00000469543 DBNDD2Q9BQY9 259 aa22.95■■□□□ 1.26
VIM-203ENST00000469543 COL18A1P39060 1754 aa22.94■■□□□ 1.26
VIM-203ENST00000469543 KIF1AQ12756 1690 aa22.94■■□□□ 1.26
VIM-203ENST00000469543 DNAJC2Q99543 621 aaKnown RBP22.94■■□□□ 1.26
VIM-203ENST00000469543 ZBTB3Q9H5J0 574 aa22.94■■□□□ 1.26
VIM-203ENST00000469543 ZSWIM6Q9HCJ5 1215 aa22.94■■□□□ 1.26
VIM-203ENST00000469543 TNS3Q68CZ2 1445 aa22.94■■□□□ 1.26
VIM-203ENST00000469543 CCDC129Q6ZRS4 1044 aa22.94■■□□□ 1.26
VIM-203ENST00000469543 STRN4Q9NRL3 753 aa22.94■■□□□ 1.26
VIM-203ENST00000469543 TPCN1Q9ULQ1 816 aa22.94■■□□□ 1.26
VIM-203ENST00000469543 CYP46A1Q9Y6A2 500 aa22.94■■□□□ 1.26
VIM-203ENST00000469543 WDR33Q9C0J8 1336 aaKnown RBP22.93■■□□□ 1.26
VIM-203ENST00000469543 SMC3Q9UQE7 1217 aa22.93■■□□□ 1.26
VIM-203ENST00000469543 ZNF330Q9Y3S2 320 aaPredicted RBP22.93■■□□□ 1.26
VIM-203ENST00000469543 STX6O43752 255 aa22.93■■□□□ 1.26
VIM-203ENST00000469543 TNNI3KQ59H18 835 aa22.93■■□□□ 1.26
VIM-203ENST00000469543 FPGT-TNNI3KV9GXZ4 949 aa22.93■■□□□ 1.26
VIM-203ENST00000469543 SLC27A2O14975 620 aa22.92■■□□□ 1.26
VIM-203ENST00000469543 GJB2P29033 226 aa22.92■■□□□ 1.26
VIM-203ENST00000469543 COPRSQ9NQ92 184 aa22.92■■□□□ 1.26
VIM-203ENST00000469543 CRYBG1Q9Y4K1 1723 aa22.91■■□□□ 1.26
VIM-203ENST00000469543 DDX46Q7L014 1031 aaKnown RBP22.91■■□□□ 1.26
VIM-203ENST00000469543 COL15A1P39059 1388 aa22.91■■□□□ 1.26
VIM-203ENST00000469543 ZKSCAN1P17029 563 aaPredicted RBP22.91■■□□□ 1.26
VIM-203ENST00000469543 ZCRB1Q8TBF4 217 aaKnown RBP22.91■■□□□ 1.26
VIM-203ENST00000469543 ZNF594Q96JF6 807 aaPredicted RBP22.91■■□□□ 1.26
VIM-203ENST00000469543 ZSCAN22P10073 491 aaPredicted RBP22.9■■□□□ 1.26
VIM-203ENST00000469543 TIMM10P62072 90 aa22.9■■□□□ 1.26
VIM-203ENST00000469543 VPS53Q5VIR6 699 aa22.9■■□□□ 1.26
VIM-203ENST00000469543 CLCN1P35523 988 aa22.9■■□□□ 1.26
VIM-203ENST00000469543 CASP7P55210 303 aa22.9■■□□□ 1.26
VIM-203ENST00000469543 LRSAM1Q6UWE0 723 aa22.9■■□□□ 1.26
VIM-203ENST00000469543 FIBPO43427 364 aa22.89■■□□□ 1.26
VIM-203ENST00000469543 PLBD2Q8NHP8 589 aa22.89■■□□□ 1.26
VIM-203ENST00000469543 STK3Q13188 491 aa22.89■■□□□ 1.25
VIM-203ENST00000469543 NEUROD6Q96NK8 337 aa22.89■■□□□ 1.25
VIM-203ENST00000469543 FAM173BQ6P4H8 233 aa22.88■■□□□ 1.25
VIM-203ENST00000469543 CCDC85AQ96PX6 553 aaPredicted RBP22.88■■□□□ 1.25
VIM-203ENST00000469543 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.88■■□□□ 1.25
VIM-203ENST00000469543 CCDC173Q0VFZ6 552 aa22.88■■□□□ 1.25
VIM-203ENST00000469543 RABL6Q3YEC7 729 aaPredicted RBP22.88■■□□□ 1.25
VIM-203ENST00000469543 PPP1R9BQ96SB3 815 aa22.88■■□□□ 1.25
VIM-203ENST00000469543 FOXO4P98177 505 aa22.87■■□□□ 1.25
VIM-203ENST00000469543 FERMT3Q86UX7 667 aa22.87■■□□□ 1.25
VIM-203ENST00000469543 KCNB2Q92953 911 aa22.87■■□□□ 1.25
VIM-203ENST00000469543 VPS37CA5D8V6 355 aaPredicted RBP22.87■■□□□ 1.25
VIM-203ENST00000469543 DNM1Q05193 864 aaKnown RBP22.87■■□□□ 1.25
VIM-203ENST00000469543 TAF5LO75529 589 aa22.86■■□□□ 1.25
VIM-203ENST00000469543 ANP32BQ92688 251 aaKnown RBP22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms