RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 NECTIN2Q92692 538 aa16.2■□□□□ 0.18
HDAC3-204ENST00000469207 NYXQ9GZU5 481 aa16.2■□□□□ 0.18
HDAC3-204ENST00000469207 HACL1Q9UJ83 578 aa16.2■□□□□ 0.18
HDAC3-204ENST00000469207 KDM3BQ7LBC6 1761 aa16.2■□□□□ 0.18
HDAC3-204ENST00000469207 PDIA6Q15084 440 aa16.19■□□□□ 0.18
HDAC3-204ENST00000469207 LRP10Q7Z4F1 713 aa16.19■□□□□ 0.18
HDAC3-204ENST00000469207 RPGRQ92834 1020 aaKnown RBP16.19■□□□□ 0.18
HDAC3-204ENST00000469207 ZNF428Q96B54 188 aa16.19■□□□□ 0.18
HDAC3-204ENST00000469207 TSPYL4Q9UJ04 414 aa16.19■□□□□ 0.18
HDAC3-204ENST00000469207 GJA3Q9Y6H8 435 aa16.19■□□□□ 0.18
HDAC3-204ENST00000469207 SNED1Q8TER0 1413 aa16.19■□□□□ 0.18
HDAC3-204ENST00000469207 MAPK8IP3Q9UPT6 1336 aa16.19■□□□□ 0.18
HDAC3-204ENST00000469207 LAMB4A4D0S4 1761 aa16.18■□□□□ 0.18
HDAC3-204ENST00000469207 COL4A5P29400 1685 aa16.18■□□□□ 0.18
HDAC3-204ENST00000469207 NTSR2O95665 410 aa16.18■□□□□ 0.18
HDAC3-204ENST00000469207 HOXA10P31260 410 aaPredicted RBP16.18■□□□□ 0.18
HDAC3-204ENST00000469207 GIGYF2Q6Y7W6 1299 aaKnown RBP16.18■□□□□ 0.18
HDAC3-204ENST00000469207 PSMD1Q99460 953 aa16.18■□□□□ 0.18
HDAC3-204ENST00000469207 FMR1Q06787 632 aaKnown RBP eCLIP16.17■□□□□ 0.18
HDAC3-204ENST00000469207 JDP2Q8WYK2 163 aa16.17■□□□□ 0.18
HDAC3-204ENST00000469207 VEGFBP49765 207 aa16.16■□□□□ 0.18
HDAC3-204ENST00000469207 NEUROD2Q15784 382 aa16.16■□□□□ 0.18
HDAC3-204ENST00000469207 KRT24Q2M2I5 525 aa16.16■□□□□ 0.18
HDAC3-204ENST00000469207 CNTROBQ8N137 903 aa16.16■□□□□ 0.18
HDAC3-204ENST00000469207 GPC2Q8N158 579 aa16.16■□□□□ 0.18
HDAC3-204ENST00000469207 SCN4AP35499 1836 aa16.16■□□□□ 0.18
HDAC3-204ENST00000469207 CNTNAP1P78357 1384 aa16.15■□□□□ 0.18
HDAC3-204ENST00000469207 TMEM88BA6NKF7 163 aa16.15■□□□□ 0.18
HDAC3-204ENST00000469207 PPEF1O14829 653 aaPredicted RBP16.15■□□□□ 0.18
HDAC3-204ENST00000469207 FOXN1O15353 648 aa16.15■□□□□ 0.18
HDAC3-204ENST00000469207 TMPOP42166 694 aaKnown RBP16.15■□□□□ 0.18
HDAC3-204ENST00000469207 EPS15P42566 896 aa16.15■□□□□ 0.18
HDAC3-204ENST00000469207 AIMP1Q12904 312 aaKnown RBP16.15■□□□□ 0.18
HDAC3-204ENST00000469207 CCDC146Q8IYE0 955 aa16.15■□□□□ 0.18
HDAC3-204ENST00000469207 LARGE2Q8N3Y3 721 aa16.15■□□□□ 0.18
HDAC3-204ENST00000469207 RBM17Q96I25 401 aaKnown RBP16.15■□□□□ 0.18
HDAC3-204ENST00000469207 CRAMP1Q96RY5 1269 aa16.15■□□□□ 0.18
HDAC3-204ENST00000469207 PNNQ9H307 717 aaKnown RBP16.15■□□□□ 0.18
HDAC3-204ENST00000469207 EIF6P56537 245 aaKnown RBP16.14■□□□□ 0.17
HDAC3-204ENST00000469207 CC2D2BQ6DHV5 1058 aa16.14■□□□□ 0.17
HDAC3-204ENST00000469207 COPS6Q7L5N1 327 aa16.14■□□□□ 0.17
HDAC3-204ENST00000469207 PPP1R42Q7Z4L9 355 aa16.14■□□□□ 0.17
HDAC3-204ENST00000469207 NLRP3Q96P20 1036 aa16.14■□□□□ 0.17
HDAC3-204ENST00000469207 SCNN1DP51172 638 aa16.13■□□□□ 0.17
HDAC3-204ENST00000469207 PNMA8AQ86V59 439 aaPredicted RBP16.13■□□□□ 0.17
HDAC3-204ENST00000469207 UTP14AQ9BVJ6 771 aaKnown RBP16.13■□□□□ 0.17
HDAC3-204ENST00000469207 HCLS1P14317 486 aaPredicted RBP16.12■□□□□ 0.17
HDAC3-204ENST00000469207 AOC3Q16853 763 aa16.12■□□□□ 0.17
HDAC3-204ENST00000469207 SLC10A5Q5PT55 438 aa16.12■□□□□ 0.17
HDAC3-204ENST00000469207 XAGE3Q8WTP9 111 aa16.12■□□□□ 0.17
HDAC3-204ENST00000469207 LTBP1Q14766 1721 aa16.11■□□□□ 0.17
HDAC3-204ENST00000469207 ADAMTSL1Q8N6G6 1762 aa16.11■□□□□ 0.17
HDAC3-204ENST00000469207 DDX10Q13206 875 aaKnown RBP16.11■□□□□ 0.17
HDAC3-204ENST00000469207 DEFB115Q30KQ5 88 aa16.11■□□□□ 0.17
HDAC3-204ENST00000469207 PARP10Q53GL7 1025 aa16.11■□□□□ 0.17
HDAC3-204ENST00000469207 LAS1LQ9Y4W2 734 aaKnown RBP16.11■□□□□ 0.17
HDAC3-204ENST00000469207 ABCC4O15439 1325 aa16.11■□□□□ 0.17
HDAC3-204ENST00000469207 ERBB4Q15303 1308 aa16.11■□□□□ 0.17
HDAC3-204ENST00000469207 IBTKQ9P2D0 1353 aaPredicted RBP16.11■□□□□ 0.17
HDAC3-204ENST00000469207 PPIP5K2O43314 1243 aa16.1■□□□□ 0.17
HDAC3-204ENST00000469207 NLRP10Q86W26 655 aa16.1■□□□□ 0.17
HDAC3-204ENST00000469207 ATP6V0A2Q9Y487 856 aa16.1■□□□□ 0.17
HDAC3-204ENST00000469207 RIC1Q4ADV7 1423 aa16.1■□□□□ 0.17
HDAC3-204ENST00000469207 TRAF5O00463 557 aa16.09■□□□□ 0.17
HDAC3-204ENST00000469207 LMOD1P29536 600 aaPredicted RBP16.09■□□□□ 0.17
HDAC3-204ENST00000469207 RALBP1Q15311 655 aa16.09■□□□□ 0.17
HDAC3-204ENST00000469207 NIM1KQ8IY84 436 aa16.09■□□□□ 0.17
HDAC3-204ENST00000469207 DDX21Q9NR30 783 aaKnown RBP eCLIP16.09■□□□□ 0.17
HDAC3-204ENST00000469207 TRIM35Q9UPQ4 493 aa16.09■□□□□ 0.17
HDAC3-204ENST00000469207 CHL1O00533 1208 aa16.08■□□□□ 0.16
HDAC3-204ENST00000469207 CXCL9Q07325 125 aa16.08■□□□□ 0.16
HDAC3-204ENST00000469207 TCIRG1Q13488 830 aa16.08■□□□□ 0.16
HDAC3-204ENST00000469207 TRMT112Q9UI30 125 aaKnown RBP16.08■□□□□ 0.16
HDAC3-204ENST00000469207 ABT1Q9ULW3 272 aaKnown RBP16.08■□□□□ 0.16
HDAC3-204ENST00000469207 RASSF10A6NK89 507 aa16.07■□□□□ 0.16
HDAC3-204ENST00000469207 GRIPAP1Q4V328 841 aa16.07■□□□□ 0.16
HDAC3-204ENST00000469207 CST9Q5W186 159 aa16.07■□□□□ 0.16
HDAC3-204ENST00000469207 BABAM1Q9NWV8 329 aa16.07■□□□□ 0.16
HDAC3-204ENST00000469207 WBP1LQ9NX94 342 aa16.07■□□□□ 0.16
HDAC3-204ENST00000469207 CHPF2Q9P2E5 772 aa16.07■□□□□ 0.16
HDAC3-204ENST00000469207 WDR33Q9C0J8 1336 aaKnown RBP16.07■□□□□ 0.16
HDAC3-204ENST00000469207 TAF1P21675 1872 aa16.06■□□□□ 0.16
HDAC3-204ENST00000469207 LBX1P52954 281 aa16.06■□□□□ 0.16
HDAC3-204ENST00000469207 GRM1Q13255 1194 aa16.06■□□□□ 0.16
HDAC3-204ENST00000469207 SP8Q8IXZ3 490 aa16.06■□□□□ 0.16
HDAC3-204ENST00000469207 ADAMTS8Q9UP79 889 aa16.06■□□□□ 0.16
HDAC3-204ENST00000469207 SHTN1A0MZ66 631 aa16.05■□□□□ 0.16
HDAC3-204ENST00000469207 BBOX1O75936 387 aa16.05■□□□□ 0.16
HDAC3-204ENST00000469207 RAD17O75943 681 aa16.05■□□□□ 0.16
HDAC3-204ENST00000469207 RTL5Q5HYW3 569 aaPredicted RBP16.05■□□□□ 0.16
HDAC3-204ENST00000469207 DPP8Q6V1X1 898 aaPredicted RBP16.05■□□□□ 0.16
HDAC3-204ENST00000469207 USP50Q70EL3 339 aaPredicted RBP16.05■□□□□ 0.16
HDAC3-204ENST00000469207 MPNDQ8N594 471 aa16.05■□□□□ 0.16
HDAC3-204ENST00000469207 RTFDC1Q9BY42 306 aaPredicted RBP16.05■□□□□ 0.16
HDAC3-204ENST00000469207 TMX4Q9H1E5 349 aaPredicted RBP16.05■□□□□ 0.16
HDAC3-204ENST00000469207 GPRC5DQ9NZD1 345 aa16.05■□□□□ 0.16
HDAC3-204ENST00000469207 ZNRF3Q9ULT6 936 aa16.05■□□□□ 0.16
HDAC3-204ENST00000469207 ATP5J2-PTCD1G3V325 749 aa16.04■□□□□ 0.16
HDAC3-204ENST00000469207 CTCFP49711 727 aaPredicted RBP16.04■□□□□ 0.16
HDAC3-204ENST00000469207 GMPSP49915 693 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms