RNA–Protein interactions for RNA: ENST00000468807.1

TTC28-204, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-204ENST00000468807 ZEB1P37275 1124 aaPredicted RBP28.36■■■□□ 2.13
TTC28-204ENST00000468807 UTP14AQ9BVJ6 771 aaKnown RBP28.36■■■□□ 2.13
TTC28-204ENST00000468807 DDX21Q9NR30 783 aaKnown RBP eCLIP28.36■■■□□ 2.13
TTC28-204ENST00000468807 CHPF2Q9P2E5 772 aa28.36■■■□□ 2.13
TTC28-204ENST00000468807 CFAP44Q96MT7 982 aa28.35■■■□□ 2.13
TTC28-204ENST00000468807 WDR90Q96KV7 1748 aa28.35■■■□□ 2.13
TTC28-204ENST00000468807 ANKRD36CQ5JPF3 1778 aa28.34■■■□□ 2.13
TTC28-204ENST00000468807 DDNO94850 711 aaPredicted RBP28.34■■■□□ 2.13
TTC28-204ENST00000468807 HSP90AB3PQ58FF7 597 aa28.34■■■□□ 2.13
TTC28-204ENST00000468807 RIC1Q4ADV7 1423 aa28.34■■■□□ 2.13
TTC28-204ENST00000468807 TCERG1O14776 1098 aaKnown RBP28.33■■■□□ 2.13
TTC28-204ENST00000468807 RBM17Q96I25 401 aaKnown RBP28.33■■■□□ 2.13
TTC28-204ENST00000468807 NLRP3Q96P20 1036 aa28.33■■■□□ 2.13
TTC28-204ENST00000468807 MBIPQ9NS73 344 aa28.33■■■□□ 2.13
TTC28-204ENST00000468807 HTRA3P83110 453 aa28.32■■■□□ 2.12
TTC28-204ENST00000468807 C3orf67Q6ZVT6 689 aa28.32■■■□□ 2.12
TTC28-204ENST00000468807 POTECB2RU33 542 aa28.31■■■□□ 2.12
TTC28-204ENST00000468807 HOXA10P31260 410 aaPredicted RBP28.31■■■□□ 2.12
TTC28-204ENST00000468807 DUSP27Q5VZP5 1158 aa28.31■■■□□ 2.12
TTC28-204ENST00000468807 SYNE4Q8N205 404 aa28.31■■■□□ 2.12
TTC28-204ENST00000468807 HOXB7P09629 217 aa28.3■■■□□ 2.12
TTC28-204ENST00000468807 ZNF428Q96B54 188 aa28.3■■■□□ 2.12
TTC28-204ENST00000468807 DBF4Q9UBU7 674 aaPredicted RBP28.3■■■□□ 2.12
TTC28-204ENST00000468807 PPEF1O14829 653 aaPredicted RBP28.29■■■□□ 2.12
TTC28-204ENST00000468807 IARSP41252 1262 aaKnown RBP28.29■■■□□ 2.12
TTC28-204ENST00000468807 CALD1Q05682 793 aaKnown RBP28.29■■■□□ 2.12
TTC28-204ENST00000468807 NLRP10Q86W26 655 aa28.29■■■□□ 2.12
TTC28-204ENST00000468807 TCIRG1Q13488 830 aa28.28■■■□□ 2.12
TTC28-204ENST00000468807 CRAMP1Q96RY5 1269 aa28.28■■■□□ 2.12
TTC28-204ENST00000468807 TRMT112Q9UI30 125 aaKnown RBP28.28■■■□□ 2.12
TTC28-204ENST00000468807 CC2D2BQ6DHV5 1058 aa28.27■■■□□ 2.12
TTC28-204ENST00000468807 IFT57Q9NWB7 429 aa28.27■■■□□ 2.12
TTC28-204ENST00000468807 ZNF541Q9H0D2 1346 aa28.26■■■□□ 2.11
TTC28-204ENST00000468807 HCLS1P14317 486 aaPredicted RBP28.26■■■□□ 2.11
TTC28-204ENST00000468807 GNAI1P63096 354 aa28.26■■■□□ 2.11
TTC28-204ENST00000468807 CCDC184Q52MB2 194 aa28.26■■■□□ 2.11
TTC28-204ENST00000468807 TMX4Q9H1E5 349 aaPredicted RBP28.26■■■□□ 2.11
TTC28-204ENST00000468807 RNF123Q5XPI4 1314 aa28.25■■■□□ 2.11
TTC28-204ENST00000468807 ELL2O00472 640 aaPredicted RBP28.25■■■□□ 2.11
TTC28-204ENST00000468807 ZNF853P0CG23 659 aa28.25■■■□□ 2.11
TTC28-204ENST00000468807 SLC10A5Q5PT55 438 aa28.25■■■□□ 2.11
TTC28-204ENST00000468807 SLC51AQ86UW1 340 aa28.25■■■□□ 2.11
TTC28-204ENST00000468807 PLBD2Q8NHP8 589 aa28.25■■■□□ 2.11
TTC28-204ENST00000468807 PSMD1Q99460 953 aa28.25■■■□□ 2.11
TTC28-204ENST00000468807 ANKRD13DQ6ZTN6 518 aa28.24■■■□□ 2.11
TTC28-204ENST00000468807 DNAJC5GQ8N7S2 189 aa28.24■■■□□ 2.11
TTC28-204ENST00000468807 HYPKQ9NX55 129 aa28.24■■■□□ 2.11
TTC28-204ENST00000468807 SH3TC1Q8TE82 1336 aa28.23■■■□□ 2.11
TTC28-204ENST00000468807 IQCA1LA6NCM1 817 aa28.23■■■□□ 2.11
TTC28-204ENST00000468807 JDP2Q8WYK2 163 aa28.23■■■□□ 2.11
TTC28-204ENST00000468807 LAMB2P55268 1798 aa28.23■■■□□ 2.11
TTC28-204ENST00000468807 SNED1Q8TER0 1413 aa28.23■■■□□ 2.11
TTC28-204ENST00000468807 ABCC4O15439 1325 aa28.22■■■□□ 2.11
TTC28-204ENST00000468807 ATP5J2-PTCD1G3V325 749 aa28.21■■■□□ 2.11
TTC28-204ENST00000468807 GRIPAP1Q4V328 841 aa28.21■■■□□ 2.11
TTC28-204ENST00000468807 POTEIP0CG38 1075 aa28.2■■■□□ 2.1
TTC28-204ENST00000468807 POTEJP0CG39 1038 aa28.2■■■□□ 2.1
TTC28-204ENST00000468807 LARGE2Q8N3Y3 721 aa28.2■■■□□ 2.1
TTC28-204ENST00000468807 L3MBTL3Q96JM7 780 aaPredicted RBP28.2■■■□□ 2.1
TTC28-204ENST00000468807 SCN4AP35499 1836 aa28.2■■■□□ 2.1
TTC28-204ENST00000468807 ZNF316A6NFI3 1004 aaPredicted RBP28.19■■■□□ 2.1
TTC28-204ENST00000468807 CHADLQ6NUI6 762 aa28.19■■■□□ 2.1
TTC28-204ENST00000468807 FZD9O00144 591 aa28.18■■■□□ 2.1
TTC28-204ENST00000468807 GOLGA2Q08379 1002 aa28.18■■■□□ 2.1
TTC28-204ENST00000468807 DDX46Q7L014 1031 aaKnown RBP28.18■■■□□ 2.1
TTC28-204ENST00000468807 RIC3Q7Z5B4 369 aa28.18■■■□□ 2.1
TTC28-204ENST00000468807 ATP6V0A2Q9Y487 856 aa28.18■■■□□ 2.1
TTC28-204ENST00000468807 ANP32CO43423 234 aa28.17■■■□□ 2.1
TTC28-204ENST00000468807 EIF6P56537 245 aaKnown RBP28.17■■■□□ 2.1
TTC28-204ENST00000468807 EAPPQ56P03 285 aaPredicted RBP28.17■■■□□ 2.1
TTC28-204ENST00000468807 RTL5Q5HYW3 569 aaPredicted RBP28.17■■■□□ 2.1
TTC28-204ENST00000468807 KLRG1Q96E93 195 aa28.17■■■□□ 2.1
TTC28-204ENST00000468807 TAF1DQ9H5J8 278 aaPredicted RBP28.17■■■□□ 2.1
TTC28-204ENST00000468807 MRS2Q9HD23 443 aa28.17■■■□□ 2.1
TTC28-204ENST00000468807 GJA3Q9Y6H8 435 aa28.17■■■□□ 2.1
TTC28-204ENST00000468807 C8orf58Q8NAV2 365 aa28.16■■■□□ 2.1
TTC28-204ENST00000468807 FAM89AQ96GI7 184 aa28.16■■■□□ 2.1
TTC28-204ENST00000468807 ISCA1Q9BUE6 129 aa28.16■■■□□ 2.1
TTC28-204ENST00000468807 PHAXQ9H814 394 aaKnown RBP28.16■■■□□ 2.1
TTC28-204ENST00000468807 HACL1Q9UJ83 578 aa28.16■■■□□ 2.1
TTC28-204ENST00000468807 GPC2Q8N158 579 aa28.15■■■□□ 2.1
TTC28-204ENST00000468807 COL4A5P29400 1685 aa28.15■■■□□ 2.1
TTC28-204ENST00000468807 TAF1P21675 1872 aa28.15■■■□□ 2.1
TTC28-204ENST00000468807 PPIP5K2O43314 1243 aa28.14■■■□□ 2.1
TTC28-204ENST00000468807 BBOX1O75936 387 aa28.14■■■□□ 2.1
TTC28-204ENST00000468807 TSR2Q969E8 191 aaKnown RBP28.14■■■□□ 2.1
TTC28-204ENST00000468807 DDX60Q8IY21 1712 aaKnown RBP28.14■■■□□ 2.1
TTC28-204ENST00000468807 PCNTO95613 3336 aa28.13■■■□□ 2.09
TTC28-204ENST00000468807 LDHDQ86WU2 507 aa28.13■■■□□ 2.09
TTC28-204ENST00000468807 NIM1KQ8IY84 436 aa28.13■■■□□ 2.09
TTC28-204ENST00000468807 CLEC11AQ9Y240 323 aa28.13■■■□□ 2.09
TTC28-204ENST00000468807 EPHX2P34913 555 aa28.12■■■□□ 2.09
TTC28-204ENST00000468807 GRAPQ13588 217 aa28.12■■■□□ 2.09
TTC28-204ENST00000468807 AOC3Q16853 763 aa28.12■■■□□ 2.09
TTC28-204ENST00000468807 DPP8Q6V1X1 898 aaPredicted RBP28.12■■■□□ 2.09
TTC28-204ENST00000468807 GRAPLQ8TC17 118 aaPredicted RBP28.12■■■□□ 2.09
TTC28-204ENST00000468807 CCDC30Q5VVM6 783 aa28.11■■■□□ 2.09
TTC28-204ENST00000468807 SP8Q8IXZ3 490 aa28.11■■■□□ 2.09
TTC28-204ENST00000468807 MPNDQ8N594 471 aa28.1■■■□□ 2.09
TTC28-204ENST00000468807 TSPYL6Q8N831 410 aa28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms