RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 OLFM4Q6UX06 510 aa22.79■■□□□ 1.24
COL7A1-206ENST00000466591 XAGE3Q8WTP9 111 aa22.79■■□□□ 1.24
COL7A1-206ENST00000466591 C7orf43Q8WVR3 580 aa22.79■■□□□ 1.24
COL7A1-206ENST00000466591 PPEF1O14829 653 aaPredicted RBP22.78■■□□□ 1.24
COL7A1-206ENST00000466591 IARSP41252 1262 aaKnown RBP22.78■■□□□ 1.24
COL7A1-206ENST00000466591 CALD1Q05682 793 aaKnown RBP22.78■■□□□ 1.24
COL7A1-206ENST00000466591 SYNE4Q8N205 404 aa22.78■■□□□ 1.24
COL7A1-206ENST00000466591 CHL1O00533 1208 aa22.77■■□□□ 1.24
COL7A1-206ENST00000466591 NTSR2O95665 410 aa22.77■■□□□ 1.24
COL7A1-206ENST00000466591 CRY2Q49AN0 593 aa22.77■■□□□ 1.24
COL7A1-206ENST00000466591 DDX21Q9NR30 783 aaKnown RBP eCLIP22.77■■□□□ 1.24
COL7A1-206ENST00000466591 TRIM35Q9UPQ4 493 aa22.77■■□□□ 1.24
COL7A1-206ENST00000466591 PDIA6Q15084 440 aa22.76■■□□□ 1.23
COL7A1-206ENST00000466591 KRT24Q2M2I5 525 aa22.76■■□□□ 1.23
COL7A1-206ENST00000466591 CHPF2Q9P2E5 772 aa22.76■■□□□ 1.23
COL7A1-206ENST00000466591 CEP350Q5VT06 3117 aa22.76■■□□□ 1.23
COL7A1-206ENST00000466591 GRIPAP1Q4V328 841 aa22.75■■□□□ 1.23
COL7A1-206ENST00000466591 EAPPQ56P03 285 aaPredicted RBP22.75■■□□□ 1.23
COL7A1-206ENST00000466591 TRMT112Q9UI30 125 aaKnown RBP22.75■■□□□ 1.23
COL7A1-206ENST00000466591 RIC1Q4ADV7 1423 aa22.74■■□□□ 1.23
COL7A1-206ENST00000466591 EIF6P56537 245 aaKnown RBP22.74■■□□□ 1.23
COL7A1-206ENST00000466591 KLRG1Q96E93 195 aa22.74■■□□□ 1.23
COL7A1-206ENST00000466591 CFAP44Q96MT7 982 aa22.74■■□□□ 1.23
COL7A1-206ENST00000466591 CRAMP1Q96RY5 1269 aa22.74■■□□□ 1.23
COL7A1-206ENST00000466591 DBF4Q9UBU7 674 aaPredicted RBP22.74■■□□□ 1.23
COL7A1-206ENST00000466591 CLEC11AQ9Y240 323 aa22.74■■□□□ 1.23
COL7A1-206ENST00000466591 RNF123Q5XPI4 1314 aa22.74■■□□□ 1.23
COL7A1-206ENST00000466591 APAF1O14727 1248 aa22.73■■□□□ 1.23
COL7A1-206ENST00000466591 HOXB7P09629 217 aa22.73■■□□□ 1.23
COL7A1-206ENST00000466591 HOXA10P31260 410 aaPredicted RBP22.73■■□□□ 1.23
COL7A1-206ENST00000466591 CHADLQ6NUI6 762 aa22.73■■□□□ 1.23
COL7A1-206ENST00000466591 LARGE2Q8N3Y3 721 aa22.73■■□□□ 1.23
COL7A1-206ENST00000466591 PSMD1Q99460 953 aa22.73■■□□□ 1.23
COL7A1-206ENST00000466591 ZEB1P37275 1124 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-206ENST00000466591 TCIRG1Q13488 830 aa22.72■■□□□ 1.23
COL7A1-206ENST00000466591 DNAJC5GQ8N7S2 189 aa22.72■■□□□ 1.23
COL7A1-206ENST00000466591 HACL1Q9UJ83 578 aa22.72■■□□□ 1.23
COL7A1-206ENST00000466591 GJA3Q9Y6H8 435 aa22.72■■□□□ 1.23
COL7A1-206ENST00000466591 POTECB2RU33 542 aa22.71■■□□□ 1.23
COL7A1-206ENST00000466591 GNAI1P63096 354 aa22.71■■□□□ 1.23
COL7A1-206ENST00000466591 DUSP27Q5VZP5 1158 aa22.71■■□□□ 1.23
COL7A1-206ENST00000466591 DDX46Q7L014 1031 aaKnown RBP22.71■■□□□ 1.23
COL7A1-206ENST00000466591 NLRP10Q86W26 655 aa22.71■■□□□ 1.23
COL7A1-206ENST00000466591 HYPKQ9NX55 129 aa22.71■■□□□ 1.23
COL7A1-206ENST00000466591 SH3TC1Q8TE82 1336 aa22.71■■□□□ 1.23
COL7A1-206ENST00000466591 ZNF541Q9H0D2 1346 aa22.71■■□□□ 1.23
COL7A1-206ENST00000466591 LMOD1P29536 600 aaPredicted RBP22.7■■□□□ 1.22
COL7A1-206ENST00000466591 LRP10Q7Z4F1 713 aa22.7■■□□□ 1.22
COL7A1-206ENST00000466591 NIM1KQ8IY84 436 aa22.7■■□□□ 1.22
COL7A1-206ENST00000466591 MBIPQ9NS73 344 aa22.7■■□□□ 1.22
COL7A1-206ENST00000466591 HCLS1P14317 486 aaPredicted RBP22.69■■□□□ 1.22
COL7A1-206ENST00000466591 ANKRD13DQ6ZTN6 518 aa22.69■■□□□ 1.22
COL7A1-206ENST00000466591 C3orf67Q6ZVT6 689 aa22.69■■□□□ 1.22
COL7A1-206ENST00000466591 LDHDQ86WU2 507 aa22.69■■□□□ 1.22
COL7A1-206ENST00000466591 PLBD2Q8NHP8 589 aa22.69■■□□□ 1.22
COL7A1-206ENST00000466591 ZNF428Q96B54 188 aa22.69■■□□□ 1.22
COL7A1-206ENST00000466591 ANKRD36CQ5JPF3 1778 aa22.68■■□□□ 1.22
COL7A1-206ENST00000466591 GOLGA2Q08379 1002 aa22.68■■□□□ 1.22
COL7A1-206ENST00000466591 GPC2Q8N158 579 aa22.68■■□□□ 1.22
COL7A1-206ENST00000466591 SUPT20HQ8NEM7 779 aa22.68■■□□□ 1.22
COL7A1-206ENST00000466591 L3MBTL3Q96JM7 780 aaPredicted RBP22.68■■□□□ 1.22
COL7A1-206ENST00000466591 TAF1DQ9H5J8 278 aaPredicted RBP22.68■■□□□ 1.22
COL7A1-206ENST00000466591 IFT57Q9NWB7 429 aa22.68■■□□□ 1.22
COL7A1-206ENST00000466591 ELL2O00472 640 aaPredicted RBP22.67■■□□□ 1.22
COL7A1-206ENST00000466591 PPIP5K2O43314 1243 aa22.67■■□□□ 1.22
COL7A1-206ENST00000466591 EPHX2P34913 555 aa22.67■■□□□ 1.22
COL7A1-206ENST00000466591 SLC10A5Q5PT55 438 aa22.67■■□□□ 1.22
COL7A1-206ENST00000466591 RIC3Q7Z5B4 369 aa22.67■■□□□ 1.22
COL7A1-206ENST00000466591 CHMP4AQ9BY43 222 aa22.67■■□□□ 1.22
COL7A1-206ENST00000466591 ABCC4O15439 1325 aa22.66■■□□□ 1.22
COL7A1-206ENST00000466591 FZD9O00144 591 aa22.66■■□□□ 1.22
COL7A1-206ENST00000466591 DPP8Q6V1X1 898 aaPredicted RBP22.66■■□□□ 1.22
COL7A1-206ENST00000466591 PNMA8AQ86V59 439 aaPredicted RBP22.66■■□□□ 1.22
COL7A1-206ENST00000466591 ATP6V0A2Q9Y487 856 aa22.66■■□□□ 1.22
COL7A1-206ENST00000466591 ATP5J2-PTCD1G3V325 749 aa22.65■■□□□ 1.22
COL7A1-206ENST00000466591 BBOX1O75936 387 aa22.65■■□□□ 1.22
COL7A1-206ENST00000466591 POTEIP0CG38 1075 aa22.65■■□□□ 1.22
COL7A1-206ENST00000466591 POTEJP0CG39 1038 aa22.65■■□□□ 1.22
COL7A1-206ENST00000466591 SCN4AP35499 1836 aa22.65■■□□□ 1.22
COL7A1-206ENST00000466591 RTL5Q5HYW3 569 aaPredicted RBP22.63■■□□□ 1.21
COL7A1-206ENST00000466591 MPNDQ8N594 471 aa22.63■■□□□ 1.21
COL7A1-206ENST00000466591 GRAPQ13588 217 aa22.62■■□□□ 1.21
COL7A1-206ENST00000466591 AOC3Q16853 763 aa22.62■■□□□ 1.21
COL7A1-206ENST00000466591 IFFO2Q5TF58 517 aa22.62■■□□□ 1.21
COL7A1-206ENST00000466591 GRAPLQ8TC17 118 aaPredicted RBP22.62■■□□□ 1.21
COL7A1-206ENST00000466591 ANP32CO43423 234 aa22.61■■□□□ 1.21
COL7A1-206ENST00000466591 DDX58O95786 925 aaKnown RBP22.61■■□□□ 1.21
COL7A1-206ENST00000466591 HSP90B1P14625 803 aaKnown RBP22.61■■□□□ 1.21
COL7A1-206ENST00000466591 SP8Q8IXZ3 490 aa22.61■■□□□ 1.21
COL7A1-206ENST00000466591 FAM89AQ96GI7 184 aa22.61■■□□□ 1.21
COL7A1-206ENST00000466591 CREBZFQ9NS37 354 aa22.61■■□□□ 1.21
COL7A1-206ENST00000466591 CCDC30Q5VVM6 783 aa22.6■■□□□ 1.21
COL7A1-206ENST00000466591 TMC4Q7Z404 712 aa22.6■■□□□ 1.21
COL7A1-206ENST00000466591 JMYQ8N9B5 988 aa22.6■■□□□ 1.21
COL7A1-206ENST00000466591 VPS33BQ9H267 617 aa22.59■■□□□ 1.21
COL7A1-206ENST00000466591 MRS2Q9HD23 443 aa22.59■■□□□ 1.21
COL7A1-206ENST00000466591 MKRN1Q9UHC7 482 aaKnown RBP22.59■■□□□ 1.21
COL7A1-206ENST00000466591 ZNF853P0CG23 659 aa22.58■■□□□ 1.21
COL7A1-206ENST00000466591 ISCA1Q9BUE6 129 aa22.58■■□□□ 1.21
COL7A1-206ENST00000466591 STK31Q9BXU1 1019 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms