RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 MYLIPQ8WY64 445 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 SHISA4Q96DD7 197 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 PSMD1Q99460 953 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 TAOK2Q9UL54 1235 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 PTCH2Q9Y6C5 1203 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 CDHR2Q9BYE9 1310 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 KDRP35968 1356 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 ZNF609O15014 1411 aa3.86□□□□□ -1.79
USP40-211ENST00000464956 KAT6BQ8WYB5 2073 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 PAPPA2Q9BXP8 1791 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 ADM5C9JUS6 153 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 GPR37L1O60883 481 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 ECM2O94769 699 aaPredicted RBP3.85□□□□□ -1.79
USP40-211ENST00000464956 MAGEA10P43363 369 aaPredicted RBP3.85□□□□□ -1.79
USP40-211ENST00000464956 GJA8P48165 433 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 GMPSP49915 693 aaPredicted RBP3.85□□□□□ -1.79
USP40-211ENST00000464956 HIRAP54198 1017 aaPredicted RBP3.85□□□□□ -1.79
USP40-211ENST00000464956 ST5P78524 1137 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 SP3Q02447 781 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 TCIRG1Q13488 830 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 ACAP1Q15027 740 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 NKX1-1Q15270 411 aaPredicted RBP3.85□□□□□ -1.79
USP40-211ENST00000464956 DLK2Q6UY11 383 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 SULF1Q8IWU6 871 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 TRPM4Q8TD43 1214 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 SLC4A9Q96Q91 983 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 SEMA6BQ9H3T3 888 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 THEGQ9P2T0 379 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 NARFQ9UHQ1 456 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 ZMYND8Q9ULU4 1186 aaPredicted RBP3.85□□□□□ -1.79
USP40-211ENST00000464956 ZBTB12Q9Y330 459 aaPredicted RBP3.85□□□□□ -1.79
USP40-211ENST00000464956 TAF1LQ8IZX4 1826 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 MRC1P22897 1456 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 ADGRB1O14514 1584 aa3.85□□□□□ -1.79
USP40-211ENST00000464956 LAMB4A4D0S4 1761 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 SMIM22K7EJ46 135 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 GJB1P08034 283 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 NPR1P16066 1061 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 ITGAEP38570 1179 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 AMPHP49418 695 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 INHBEP58166 350 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 MKRN3Q13064 507 aaKnown RBP3.84□□□□□ -1.79
USP40-211ENST00000464956 GRIPAP1Q4V328 841 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 OTUD7BQ6GQQ9 843 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 C7orf61Q8IZ16 206 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 USHBP1Q8N6Y0 703 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 CNBD1Q8NA66 436 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 SH3TC2Q8TF17 1288 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 KCNH6Q9H252 994 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 EPHX3Q9H6B9 360 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 SPG7Q9UQ90 795 aa3.84□□□□□ -1.79
USP40-211ENST00000464956 RBBP6Q7Z6E9 1792 aaKnown RBP3.84□□□□□ -1.8
USP40-211ENST00000464956 UNC80Q8N2C7 3258 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 MANSC4A6NHS7 340 aaPredicted RBP3.83□□□□□ -1.8
USP40-211ENST00000464956 PTCD1O75127 700 aaKnown RBP3.83□□□□□ -1.8
USP40-211ENST00000464956 SYN1P17600 705 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 CAPN2P17655 700 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 HOXC9P31274 260 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 TNIP1Q15025 636 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 NBPF6Q5VWK0 638 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 CC2D2BQ6DHV5 1058 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 PRR5LQ6MZQ0 368 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 OLFM4Q6UX06 510 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 IFNL1Q8IU54 200 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.83□□□□□ -1.8
USP40-211ENST00000464956 MICALL2Q8IY33 904 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 USP38Q8NB14 1042 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 CDCA5Q96FF9 252 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 NBPF4Q96M43 638 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 RNF208Q9H0X6 261 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 DACH1Q9UI36 760 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 CNOT7Q9UIV1 285 aaKnown RBP3.83□□□□□ -1.8
USP40-211ENST00000464956 SOS1Q07889 1333 aaPredicted RBP3.83□□□□□ -1.8
USP40-211ENST00000464956 FAM205AQ6ZU69 1335 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 NPC1L1Q9UHC9 1359 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 SCN11AQ9UI33 1791 aa3.83□□□□□ -1.8
USP40-211ENST00000464956 TRPM7Q96QT4 1865 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 KTN1Q86UP2 1357 aaKnown RBP3.82□□□□□ -1.8
USP40-211ENST00000464956 FAM86C2PA6NEL3 165 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 PRR33A8MZF0 331 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 PPIP5K2O43314 1243 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 ALDH1B1P30837 517 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 EIF5P55010 431 aaKnown RBP3.82□□□□□ -1.8
USP40-211ENST00000464956 CXCL9Q07325 125 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 TTLL12Q14166 644 aaPredicted RBP3.82□□□□□ -1.8
USP40-211ENST00000464956 KIF22Q14807 665 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 MTFR1Q15390 333 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 INTS5Q6P9B9 1019 aaKnown RBP3.82□□□□□ -1.8
USP40-211ENST00000464956 NME9Q86XW9 330 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 U2AF1L4Q8WU68 220 aaKnown RBP3.82□□□□□ -1.8
USP40-211ENST00000464956 NECAB3Q96P71 396 aaPredicted RBP3.82□□□□□ -1.8
USP40-211ENST00000464956 UIMC1Q96RL1 719 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 ZNRF3Q9ULT6 936 aa3.82□□□□□ -1.8
USP40-211ENST00000464956 PKD1L2Q7Z442 2459 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 COL15A1P39059 1388 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 UBE2Q2LH0YL09 131 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 GNRH1P01148 92 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 CCL5P13501 91 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 PRMT2P55345 433 aa3.81□□□□□ -1.8
USP40-211ENST00000464956 UBXN2AP68543 259 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms