RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 IQCA1Q86XH1 822 aa17.18■□□□□ 0.34
PTPRU-205ENST00000460170 PDCL2Q8N4E4 241 aa17.18■□□□□ 0.34
PTPRU-205ENST00000460170 NCOA7Q8NI08 942 aa17.18■□□□□ 0.34
PTPRU-205ENST00000460170 DEF6Q9H4E7 631 aa17.18■□□□□ 0.34
PTPRU-205ENST00000460170 SSRP1Q08945 709 aaKnown RBP17.17■□□□□ 0.34
PTPRU-205ENST00000460170 STX1AQ16623 288 aa17.17■□□□□ 0.34
PTPRU-205ENST00000460170 CTCFLQ8NI51 663 aaPredicted RBP17.17■□□□□ 0.34
PTPRU-205ENST00000460170 INTS4Q96HW7 963 aaKnown RBP17.17■□□□□ 0.34
PTPRU-205ENST00000460170 SBNO2Q9Y2G9 1366 aa17.17■□□□□ 0.34
PTPRU-205ENST00000460170 EXOC5O00471 708 aa17.17■□□□□ 0.34
PTPRU-205ENST00000460170 LUC7LQ9NQ29 371 aaKnown RBP17.17■□□□□ 0.34
PTPRU-205ENST00000460170 IARSP41252 1262 aaKnown RBP17.17■□□□□ 0.34
PTPRU-205ENST00000460170 PHAXQ9H814 394 aaKnown RBP17.17■□□□□ 0.34
PTPRU-205ENST00000460170 CCDC66A2RUB6 948 aa17.17■□□□□ 0.34
PTPRU-205ENST00000460170 NEMFO60524 1076 aa17.17■□□□□ 0.34
PTPRU-205ENST00000460170 F13A1P00488 732 aa17.17■□□□□ 0.34
PTPRU-205ENST00000460170 MCMDC2Q4G0Z9 681 aa17.17■□□□□ 0.34
PTPRU-205ENST00000460170 TBX22Q9Y458 520 aa17.17■□□□□ 0.34
PTPRU-205ENST00000460170 MAGI2Q86UL8 1455 aa17.16■□□□□ 0.34
PTPRU-205ENST00000460170 RANBP6O60518 1105 aaKnown RBP17.16■□□□□ 0.34
PTPRU-205ENST00000460170 KIF18AQ8NI77 898 aa17.16■□□□□ 0.34
PTPRU-205ENST00000460170 UBXN4Q92575 508 aa17.16■□□□□ 0.34
PTPRU-205ENST00000460170 EPB41L2O43491 1005 aaKnown RBP17.16■□□□□ 0.34
PTPRU-205ENST00000460170 CLCN1P35523 988 aa17.16■□□□□ 0.34
PTPRU-205ENST00000460170 CWF19L2Q2TBE0 894 aaKnown RBP17.16■□□□□ 0.34
PTPRU-205ENST00000460170 ZHX3Q9H4I2 956 aa17.16■□□□□ 0.34
PTPRU-205ENST00000460170 BMP2KQ9NSY1 1161 aaPredicted RBP17.16■□□□□ 0.34
PTPRU-205ENST00000460170 ZFYP08048 801 aaPredicted RBP17.16■□□□□ 0.34
PTPRU-205ENST00000460170 NMIQ13287 307 aaPredicted RBP17.16■□□□□ 0.34
PTPRU-205ENST00000460170 CNNM3Q8NE01 707 aa17.16■□□□□ 0.34
PTPRU-205ENST00000460170 OTUD7AQ8TE49 926 aaPredicted RBP17.16■□□□□ 0.34
PTPRU-205ENST00000460170 TANGO6Q9C0B7 1094 aa17.16■□□□□ 0.34
PTPRU-205ENST00000460170 PPFIA3O75145 1194 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 POLR3DP05423 398 aaPredicted RBP17.15■□□□□ 0.34
PTPRU-205ENST00000460170 ZNF287Q9HBT7 754 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 ERLIN1O75477 346 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 IL15P40933 162 aaPredicted RBP17.15■□□□□ 0.34
PTPRU-205ENST00000460170 KDM5CP41229 1560 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 TOP1P11387 765 aaKnown RBP17.15■□□□□ 0.34
PTPRU-205ENST00000460170 AK2P54819 239 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 ARHGAP29Q52LW3 1261 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 TMEM67Q5HYA8 995 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 IP6K1Q92551 441 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 ZSCAN12O43309 604 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 USP5P45974 858 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 ZCRB1Q8TBF4 217 aaKnown RBP17.15■□□□□ 0.34
PTPRU-205ENST00000460170 LRRC2Q9BYS8 371 aa17.15■□□□□ 0.34
PTPRU-205ENST00000460170 KLHL10Q6JEL2 608 aa17.14■□□□□ 0.33
PTPRU-205ENST00000460170 MICU3Q86XE3 530 aa17.14■□□□□ 0.33
PTPRU-205ENST00000460170 MKNK2Q9HBH9 465 aa17.14■□□□□ 0.33
PTPRU-205ENST00000460170 CWC15Q9P013 229 aaKnown RBP17.14■□□□□ 0.33
PTPRU-205ENST00000460170 GCP02774 474 aa17.14■□□□□ 0.33
PTPRU-205ENST00000460170 KCNA6P17658 529 aa17.14■□□□□ 0.33
PTPRU-205ENST00000460170 BABAM1Q9NWV8 329 aa17.14■□□□□ 0.33
PTPRU-205ENST00000460170 SSBP05455 408 aaKnown RBP eCLIP17.14■□□□□ 0.33
PTPRU-205ENST00000460170 PRIM1P49642 420 aaKnown RBP17.14■□□□□ 0.33
PTPRU-205ENST00000460170 TNNT1P13805 278 aa17.14■□□□□ 0.33
PTPRU-205ENST00000460170 METAP2P50579 478 aaKnown RBP eCLIP17.14■□□□□ 0.33
PTPRU-205ENST00000460170 DNM1Q05193 864 aaKnown RBP17.14■□□□□ 0.33
PTPRU-205ENST00000460170 TXLNBQ8N3L3 684 aa17.14■□□□□ 0.33
PTPRU-205ENST00000460170 BIN1O00499 593 aa17.13■□□□□ 0.33
PTPRU-205ENST00000460170 EIF5P55010 431 aaKnown RBP17.13■□□□□ 0.33
PTPRU-205ENST00000460170 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.13■□□□□ 0.33
PTPRU-205ENST00000460170 GSDMDP57764 484 aa17.13■□□□□ 0.33
PTPRU-205ENST00000460170 NFATC2IPQ8NCF5 419 aa17.13■□□□□ 0.33
PTPRU-205ENST00000460170 SBNO1A3KN83 1393 aa17.13■□□□□ 0.33
PTPRU-205ENST00000460170 NPHP3Q7Z494 1330 aa17.13■□□□□ 0.33
PTPRU-205ENST00000460170 KLF18A0A0U1RQI7 1052 aa17.13■□□□□ 0.33
PTPRU-205ENST00000460170 ZPR1O75312 459 aa17.13■□□□□ 0.33
PTPRU-205ENST00000460170 NOM1Q5C9Z4 860 aaKnown RBP17.13■□□□□ 0.33
PTPRU-205ENST00000460170 UQCRFS1P1P0C7P4 283 aa17.12■□□□□ 0.33
PTPRU-205ENST00000460170 C16orf45Q96MC5 204 aaPredicted RBP17.12■□□□□ 0.33
PTPRU-205ENST00000460170 Q6ZUG5 572 aa17.12■□□□□ 0.33
PTPRU-205ENST00000460170 DZIP1Q86YF9 867 aaKnown RBP17.12■□□□□ 0.33
PTPRU-205ENST00000460170 RAB11FIP4Q86YS3 637 aa17.12■□□□□ 0.33
PTPRU-205ENST00000460170 ATP10AO60312 1499 aa17.12■□□□□ 0.33
PTPRU-205ENST00000460170 CATIPQ7Z7H3 387 aa17.12■□□□□ 0.33
PTPRU-205ENST00000460170 TRMT2AQ8IZ69 625 aaKnown RBP17.12■□□□□ 0.33
PTPRU-205ENST00000460170 CREB3L3Q68CJ9 461 aa17.11■□□□□ 0.33
PTPRU-205ENST00000460170 CCDC144CPQ8IYA2 1237 aa17.11■□□□□ 0.33
PTPRU-205ENST00000460170 RNMTO43148 476 aaKnown RBP17.11■□□□□ 0.33
PTPRU-205ENST00000460170 ATP2B3Q16720 1220 aa17.11■□□□□ 0.33
PTPRU-205ENST00000460170 ODF2Q5BJF6 829 aa17.11■□□□□ 0.33
PTPRU-205ENST00000460170 MFSD6Q6ZSS7 791 aa17.11■□□□□ 0.33
PTPRU-205ENST00000460170 CCDC181Q5TID7 509 aa17.11■□□□□ 0.33
PTPRU-205ENST00000460170 FAM200AQ8TCP9 573 aa17.11■□□□□ 0.33
PTPRU-205ENST00000460170 CDC5LQ99459 802 aaKnown RBP17.11■□□□□ 0.33
PTPRU-205ENST00000460170 DDX21Q9NR30 783 aaKnown RBP eCLIP17.11■□□□□ 0.33
PTPRU-205ENST00000460170 DACT1Q9NYF0 836 aa17.11■□□□□ 0.33
PTPRU-205ENST00000460170 KDM5AP29375 1690 aaKnown RBP17.11■□□□□ 0.33
PTPRU-205ENST00000460170 PLXNC1O60486 1568 aa17.11■□□□□ 0.33
PTPRU-205ENST00000460170 ABCA8O94911 1581 aa17.11■□□□□ 0.33
PTPRU-205ENST00000460170 AXDND1Q5T1B0 1012 aaPredicted RBP17.11■□□□□ 0.33
PTPRU-205ENST00000460170 TRMT1Q9NXH9 659 aaKnown RBP17.1■□□□□ 0.33
PTPRU-205ENST00000460170 MYO6Q9UM54 1294 aa17.1■□□□□ 0.33
PTPRU-205ENST00000460170 RBM5P52756 815 aaKnown RBP eCLIP17.1■□□□□ 0.33
PTPRU-205ENST00000460170 EIF3JO75822 258 aaKnown RBP17.1■□□□□ 0.33
PTPRU-205ENST00000460170 ADAMTS2O95450 1211 aa17.1■□□□□ 0.33
PTPRU-205ENST00000460170 ZSCAN29Q8IWY8 852 aaPredicted RBP17.1■□□□□ 0.33
PTPRU-205ENST00000460170 RAD50Q92878 1312 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms