RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 CCDC93Q567U6 631 aa24■■□□□ 1.43
HOXD3-204ENST00000459979 HDGFL1Q5TGJ6 251 aa24■■□□□ 1.43
HOXD3-204ENST00000459979 TPTE2Q6XPS3 522 aa24■■□□□ 1.43
HOXD3-204ENST00000459979 GIGYF2Q6Y7W6 1299 aaKnown RBP24■■□□□ 1.43
HOXD3-204ENST00000459979 SCN4AP35499 1836 aa23.99■■□□□ 1.43
HOXD3-204ENST00000459979 DBF4Q9UBU7 674 aaPredicted RBP23.99■■□□□ 1.43
HOXD3-204ENST00000459979 ANXA1P04083 346 aa23.98■■□□□ 1.43
HOXD3-204ENST00000459979 CHADLQ6NUI6 762 aa23.98■■□□□ 1.43
HOXD3-204ENST00000459979 ZNF34Q8IZ26 560 aa23.98■■□□□ 1.43
HOXD3-204ENST00000459979 FAM9BQ8IZU0 186 aa23.98■■□□□ 1.43
HOXD3-204ENST00000459979 NECTIN2Q92692 538 aa23.98■■□□□ 1.43
HOXD3-204ENST00000459979 ZBTB3Q9H5J0 574 aa23.98■■□□□ 1.43
HOXD3-204ENST00000459979 ZNF277Q9NRM2 450 aaPredicted RBP23.98■■□□□ 1.43
HOXD3-204ENST00000459979 KLRG2A4D1S0 409 aaPredicted RBP23.97■■□□□ 1.43
HOXD3-204ENST00000459979 HSPA1AP0DMV8 641 aaKnown RBP23.97■■□□□ 1.43
HOXD3-204ENST00000459979 HSPA1BP0DMV9 641 aaKnown RBP23.97■■□□□ 1.43
HOXD3-204ENST00000459979 COPS6Q7L5N1 327 aa23.97■■□□□ 1.43
HOXD3-204ENST00000459979 WDR63Q8IWG1 891 aa23.97■■□□□ 1.43
HOXD3-204ENST00000459979 CHMP4AQ9BY43 222 aa23.97■■□□□ 1.43
HOXD3-204ENST00000459979 CHPF2Q9P2E5 772 aa23.97■■□□□ 1.43
HOXD3-204ENST00000459979 ABCC12Q96J65 1359 aa23.96■■□□□ 1.43
HOXD3-204ENST00000459979 IBTKQ9P2D0 1353 aaPredicted RBP23.96■■□□□ 1.43
HOXD3-204ENST00000459979 ZNF541Q9H0D2 1346 aa23.96■■□□□ 1.43
HOXD3-204ENST00000459979 FKBP4Q02790 459 aaKnown RBP eCLIP23.96■■□□□ 1.43
HOXD3-204ENST00000459979 C8orf58Q8NAV2 365 aa23.96■■□□□ 1.43
HOXD3-204ENST00000459979 XAGE3Q8WTP9 111 aa23.96■■□□□ 1.43
HOXD3-204ENST00000459979 PCNTO95613 3336 aa23.95■■□□□ 1.42
HOXD3-204ENST00000459979 GTF2E1P29083 439 aaPredicted RBP23.95■■□□□ 1.42
HOXD3-204ENST00000459979 NUTM1Q86Y26 1132 aa23.95■■□□□ 1.42
HOXD3-204ENST00000459979 NYXQ9GZU5 481 aa23.95■■□□□ 1.42
HOXD3-204ENST00000459979 HYPKQ9NX55 129 aa23.95■■□□□ 1.42
HOXD3-204ENST00000459979 UBN2Q6ZU65 1347 aa23.93■■□□□ 1.42
HOXD3-204ENST00000459979 CAPN15O75808 1086 aa23.93■■□□□ 1.42
HOXD3-204ENST00000459979 PARP10Q53GL7 1025 aa23.93■■□□□ 1.42
HOXD3-204ENST00000459979 HSP90AB3PQ58FF7 597 aa23.93■■□□□ 1.42
HOXD3-204ENST00000459979 MKRN1Q9UHC7 482 aaKnown RBP23.93■■□□□ 1.42
HOXD3-204ENST00000459979 AIMP1Q12904 312 aaKnown RBP23.92■■□□□ 1.42
HOXD3-204ENST00000459979 TSR2Q969E8 191 aaKnown RBP23.92■■□□□ 1.42
HOXD3-204ENST00000459979 L3MBTL3Q96JM7 780 aaPredicted RBP23.92■■□□□ 1.42
HOXD3-204ENST00000459979 TAF1DQ9H5J8 278 aaPredicted RBP23.92■■□□□ 1.42
HOXD3-204ENST00000459979 IQCA1LA6NCM1 817 aa23.91■■□□□ 1.42
HOXD3-204ENST00000459979 CCER2I3L3R5 266 aa23.91■■□□□ 1.42
HOXD3-204ENST00000459979 ELL2O00472 640 aaPredicted RBP23.91■■□□□ 1.42
HOXD3-204ENST00000459979 GPTP24298 496 aa23.91■■□□□ 1.42
HOXD3-204ENST00000459979 TNS4Q8IZW8 715 aa23.91■■□□□ 1.42
HOXD3-204ENST00000459979 CREBZFQ9NS37 354 aa23.91■■□□□ 1.42
HOXD3-204ENST00000459979 RIC1Q4ADV7 1423 aa23.91■■□□□ 1.42
HOXD3-204ENST00000459979 ANKRD36CQ5JPF3 1778 aa23.91■■□□□ 1.42
HOXD3-204ENST00000459979 EAPPQ56P03 285 aaPredicted RBP23.9■■□□□ 1.42
HOXD3-204ENST00000459979 SUSD4Q5VX71 490 aa23.9■■□□□ 1.42
HOXD3-204ENST00000459979 RTKN2Q8IZC4 609 aa23.9■■□□□ 1.42
HOXD3-204ENST00000459979 SYNE4Q8N205 404 aa23.9■■□□□ 1.42
HOXD3-204ENST00000459979 PLBD2Q8NHP8 589 aa23.9■■□□□ 1.42
HOXD3-204ENST00000459979 ALDH1B1P30837 517 aa23.89■■□□□ 1.41
HOXD3-204ENST00000459979 IARSP41252 1262 aaKnown RBP23.89■■□□□ 1.41
HOXD3-204ENST00000459979 TCIRG1Q13488 830 aa23.89■■□□□ 1.41
HOXD3-204ENST00000459979 ANKRD13DQ6ZTN6 518 aa23.89■■□□□ 1.41
HOXD3-204ENST00000459979 SLC51AQ86UW1 340 aa23.89■■□□□ 1.41
HOXD3-204ENST00000459979 LDHDQ86WU2 507 aa23.89■■□□□ 1.41
HOXD3-204ENST00000459979 TSPYL6Q8N831 410 aa23.89■■□□□ 1.41
HOXD3-204ENST00000459979 ADAMTSL1Q8N6G6 1762 aa23.88■■□□□ 1.41
HOXD3-204ENST00000459979 SNED1Q8TER0 1413 aa23.88■■□□□ 1.41
HOXD3-204ENST00000459979 NTSR2O95665 410 aa23.88■■□□□ 1.41
HOXD3-204ENST00000459979 CCDC30Q5VVM6 783 aa23.88■■□□□ 1.41
HOXD3-204ENST00000459979 PPP1R42Q7Z4L9 355 aa23.88■■□□□ 1.41
HOXD3-204ENST00000459979 SALL2Q9Y467 1007 aaPredicted RBP23.88■■□□□ 1.41
HOXD3-204ENST00000459979 COL4A5P29400 1685 aa23.88■■□□□ 1.41
HOXD3-204ENST00000459979 RNF123Q5XPI4 1314 aa23.87■■□□□ 1.41
HOXD3-204ENST00000459979 CRY2Q49AN0 593 aa23.87■■□□□ 1.41
HOXD3-204ENST00000459979 PASKQ96RG2 1323 aa23.86■■□□□ 1.41
HOXD3-204ENST00000459979 FANCIQ9NVI1 1328 aa23.86■■□□□ 1.41
HOXD3-204ENST00000459979 SLC10A5Q5PT55 438 aa23.86■■□□□ 1.41
HOXD3-204ENST00000459979 HACL1Q9UJ83 578 aa23.86■■□□□ 1.41
HOXD3-204ENST00000459979 TWISTNBQ3B726 338 aaPredicted RBP23.85■■□□□ 1.41
HOXD3-204ENST00000459979 NLRP10Q86W26 655 aa23.85■■□□□ 1.41
HOXD3-204ENST00000459979 RPGRQ92834 1020 aaKnown RBP23.85■■□□□ 1.41
HOXD3-204ENST00000459979 UTP14AQ9BVJ6 771 aaKnown RBP23.85■■□□□ 1.41
HOXD3-204ENST00000459979 CLEC11AQ9Y240 323 aa23.85■■□□□ 1.41
HOXD3-204ENST00000459979 ZNF521Q96K83 1311 aa23.84■■□□□ 1.41
HOXD3-204ENST00000459979 FZD9O00144 591 aa23.84■■□□□ 1.41
HOXD3-204ENST00000459979 EPHX2P34913 555 aa23.84■■□□□ 1.41
HOXD3-204ENST00000459979 CNTNAP1P78357 1384 aa23.83■■□□□ 1.41
HOXD3-204ENST00000459979 TCERG1O14776 1098 aaKnown RBP23.83■■□□□ 1.41
HOXD3-204ENST00000459979 ITGBL1O95965 494 aaPredicted RBP23.83■■□□□ 1.41
HOXD3-204ENST00000459979 TRIM28Q13263 835 aaKnown RBP23.83■■□□□ 1.41
HOXD3-204ENST00000459979 C3orf67Q6ZVT6 689 aa23.83■■□□□ 1.41
HOXD3-204ENST00000459979 ISCA1Q9BUE6 129 aa23.83■■□□□ 1.41
HOXD3-204ENST00000459979 PHAXQ9H814 394 aaKnown RBP23.83■■□□□ 1.41
HOXD3-204ENST00000459979 LTBP1Q14766 1721 aa23.83■■□□□ 1.41
HOXD3-204ENST00000459979 CACNA1FO60840 1977 aa23.82■■□□□ 1.4
HOXD3-204ENST00000459979 HOXA10P31260 410 aaPredicted RBP23.82■■□□□ 1.4
HOXD3-204ENST00000459979 GOLGA2Q08379 1002 aa23.82■■□□□ 1.4
HOXD3-204ENST00000459979 PSMD1Q99460 953 aa23.82■■□□□ 1.4
HOXD3-204ENST00000459979 SPINK5Q9NQ38 1064 aaPredicted RBP23.82■■□□□ 1.4
HOXD3-204ENST00000459979 MYH16Q9H6N6 1097 aa23.81■■□□□ 1.4
HOXD3-204ENST00000459979 LAMB2P55268 1798 aa23.8■■□□□ 1.4
HOXD3-204ENST00000459979 MAP1SQ66K74 1059 aaPredicted RBP23.8■■□□□ 1.4
HOXD3-204ENST00000459979 JDP2Q8WYK2 163 aa23.8■■□□□ 1.4
HOXD3-204ENST00000459979 GJA3Q9Y6H8 435 aa23.8■■□□□ 1.4
HOXD3-204ENST00000459979 TMEM88BA6NKF7 163 aa23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms