RNA–Protein interactions for RNA: ENST00000453615.1

PSMD4-206, Transcript of proteasome 26S subunit, non-ATPase 4, human

TSL 3

Gene PSMD4, Length 371 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMD4-206	ENST00000453615	COPS6	Q7L5N1	327 aa		11.16	□□□□□ -0.62
PSMD4-206	ENST00000453615	XAGE3	Q8WTP9	111 aa		11.16	□□□□□ -0.62
PSMD4-206	ENST00000453615	NECTIN2	Q92692	538 aa		11.16	□□□□□ -0.62
PSMD4-206	ENST00000453615	CRAMP1	Q96RY5	1269 aa		11.16	□□□□□ -0.62
PSMD4-206	ENST00000453615	PSMD1	Q99460	953 aa		11.16	□□□□□ -0.62
PSMD4-206	ENST00000453615	CHMP4A	Q9BY43	222 aa		11.16	□□□□□ -0.62
PSMD4-206	ENST00000453615	TRIM35	Q9UPQ4	493 aa		11.16	□□□□□ -0.62
PSMD4-206	ENST00000453615	ANXA1	P04083	346 aa		11.15	□□□□□ -0.62
PSMD4-206	ENST00000453615	IARS	P41252	1262 aa	Known RBP	11.15	□□□□□ -0.62
PSMD4-206	ENST00000453615	PROSER3	Q2NL68	480 aa		11.15	□□□□□ -0.62
PSMD4-206	ENST00000453615	LRP10	Q7Z4F1	713 aa		11.15	□□□□□ -0.62
PSMD4-206	ENST00000453615	SYNE4	Q8N205	404 aa		11.15	□□□□□ -0.62
PSMD4-206	ENST00000453615	DNAJC5G	Q8N7S2	189 aa		11.15	□□□□□ -0.62
PSMD4-206	ENST00000453615	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.15	□□□□□ -0.62
PSMD4-206	ENST00000453615	CFAP44	Q96MT7	982 aa		11.15	□□□□□ -0.62
PSMD4-206	ENST00000453615	DBF4	Q9UBU7	674 aa	Predicted RBP	11.15	□□□□□ -0.62
PSMD4-206	ENST00000453615	FER1L6	Q2WGJ9	1857 aa		11.15	□□□□□ -0.63
PSMD4-206	ENST00000453615	PPEF1	O14829	653 aa	Predicted RBP	11.14	□□□□□ -0.63
PSMD4-206	ENST00000453615	ZEB1	P37275	1124 aa	Predicted RBP	11.14	□□□□□ -0.63
PSMD4-206	ENST00000453615	CHADL	Q6NUI6	762 aa		11.14	□□□□□ -0.63
PSMD4-206	ENST00000453615	OLFM4	Q6UX06	510 aa		11.14	□□□□□ -0.63
PSMD4-206	ENST00000453615	KLRG1	Q96E93	195 aa		11.14	□□□□□ -0.63
PSMD4-206	ENST00000453615	HYPK	Q9NX55	129 aa		11.14	□□□□□ -0.63
PSMD4-206	ENST00000453615	CHPF2	Q9P2E5	772 aa		11.14	□□□□□ -0.63
PSMD4-206	ENST00000453615	TRMT112	Q9UI30	125 aa	Known RBP	11.14	□□□□□ -0.63
PSMD4-206	ENST00000453615	ARFGEF2	Q9Y6D5	1785 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	SH3TC1	Q8TE82	1336 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	WDR90	Q96KV7	1748 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	POTEC	B2RU33	542 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	EIF6	P56537	245 aa	Known RBP	11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	GNAI1	P63096	354 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	TCIRG1	Q13488	830 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	SLC10A5	Q5PT55	438 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	NLRP10	Q86W26	655 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	LDHD	Q86WU2	507 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	LARGE2	Q8N3Y3	721 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	PLBD2	Q8NHP8	589 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	HACL1	Q9UJ83	578 aa		11.13	□□□□□ -0.63
PSMD4-206	ENST00000453615	APAF1	O14727	1248 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	TCERG1	O14776	1098 aa	Known RBP	11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	BBOX1	O75936	387 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	HTRA3	P83110	453 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	KRT24	Q2M2I5	525 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	DUSP27	Q5VZP5	1158 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	ANKRD13D	Q6ZTN6	518 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	DDX46	Q7L014	1031 aa	Known RBP	11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	PNMA8A	Q86V59	439 aa	Predicted RBP	11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	GPC2	Q8N158	579 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	SUPT20H	Q8NEM7	779 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	MBIP	Q9NS73	344 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	IFT57	Q9NWB7	429 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	NUP98	P52948	1817 aa		11.12	□□□□□ -0.63
PSMD4-206	ENST00000453615	ZNF541	Q9H0D2	1346 aa		11.11	□□□□□ -0.63
PSMD4-206	ENST00000453615	FZD9	O00144	591 aa		11.11	□□□□□ -0.63
PSMD4-206	ENST00000453615	HSP90B1	P14625	803 aa	Known RBP	11.11	□□□□□ -0.63
PSMD4-206	ENST00000453615	LMOD1	P29536	600 aa	Predicted RBP	11.11	□□□□□ -0.63
PSMD4-206	ENST00000453615	GOLGA2	Q08379	1002 aa		11.11	□□□□□ -0.63
PSMD4-206	ENST00000453615	EAPP	Q56P03	285 aa	Predicted RBP	11.11	□□□□□ -0.63
PSMD4-206	ENST00000453615	NIM1K	Q8IY84	436 aa		11.11	□□□□□ -0.63
PSMD4-206	ENST00000453615	JMY	Q8N9B5	988 aa		11.11	□□□□□ -0.63
PSMD4-206	ENST00000453615	VPS33B	Q9H267	617 aa		11.11	□□□□□ -0.63
PSMD4-206	ENST00000453615	ATP6V0A2	Q9Y487	856 aa		11.11	□□□□□ -0.63
PSMD4-206	ENST00000453615	DICER1	Q9UPY3	1922 aa	Known RBP	11.1	□□□□□ -0.63
PSMD4-206	ENST00000453615	HCLS1	P14317	486 aa	Predicted RBP	11.1	□□□□□ -0.63
PSMD4-206	ENST00000453615	EPHX2	P34913	555 aa		11.1	□□□□□ -0.63
PSMD4-206	ENST00000453615	DPP8	Q6V1X1	898 aa	Predicted RBP	11.1	□□□□□ -0.63
PSMD4-206	ENST00000453615	C3orf67	Q6ZVT6	689 aa		11.1	□□□□□ -0.63
PSMD4-206	ENST00000453615	TMC4	Q7Z404	712 aa		11.1	□□□□□ -0.63
PSMD4-206	ENST00000453615	CLEC11A	Q9Y240	323 aa		11.1	□□□□□ -0.63
PSMD4-206	ENST00000453615	GJA3	Q9Y6H8	435 aa		11.1	□□□□□ -0.63
PSMD4-206	ENST00000453615	CCDC88A	Q3V6T2	1871 aa		11.1	□□□□□ -0.63
PSMD4-206	ENST00000453615	ABCC4	O15439	1325 aa		11.09	□□□□□ -0.63
PSMD4-206	ENST00000453615	CACNA1S	Q13698	1873 aa		11.09	□□□□□ -0.63
PSMD4-206	ENST00000453615	PPIP5K2	O43314	1243 aa		11.09	□□□□□ -0.63
PSMD4-206	ENST00000453615	ZNF853	P0CG23	659 aa		11.09	□□□□□ -0.63
PSMD4-206	ENST00000453615	IFFO2	Q5TF58	517 aa		11.09	□□□□□ -0.63
PSMD4-206	ENST00000453615	CREBZF	Q9NS37	354 aa		11.09	□□□□□ -0.63
PSMD4-206	ENST00000453615	PCNT	O95613	3336 aa		11.09	□□□□□ -0.63
PSMD4-206	ENST00000453615	DDX58	O95786	925 aa	Known RBP	11.08	□□□□□ -0.64
PSMD4-206	ENST00000453615	POTEI	P0CG38	1075 aa		11.08	□□□□□ -0.64
PSMD4-206	ENST00000453615	POTEJ	P0CG39	1038 aa		11.08	□□□□□ -0.64
PSMD4-206	ENST00000453615	GRAP	Q13588	217 aa		11.08	□□□□□ -0.64
PSMD4-206	ENST00000453615	CCDC30	Q5VVM6	783 aa		11.08	□□□□□ -0.64
PSMD4-206	ENST00000453615	RIC3	Q7Z5B4	369 aa		11.08	□□□□□ -0.64
PSMD4-206	ENST00000453615	SP8	Q8IXZ3	490 aa		11.08	□□□□□ -0.64
PSMD4-206	ENST00000453615	MPND	Q8N594	471 aa		11.08	□□□□□ -0.64
PSMD4-206	ENST00000453615	GRAPL	Q8TC17	118 aa	Predicted RBP	11.08	□□□□□ -0.64
PSMD4-206	ENST00000453615	SNED1	Q8TER0	1413 aa		11.08	□□□□□ -0.64
PSMD4-206	ENST00000453615	ATP5J2-PTCD1	G3V325	749 aa		11.07	□□□□□ -0.64
PSMD4-206	ENST00000453615	ELL2	O00472	640 aa	Predicted RBP	11.07	□□□□□ -0.64
PSMD4-206	ENST00000453615	TRIM28	Q13263	835 aa	Known RBP	11.07	□□□□□ -0.64
PSMD4-206	ENST00000453615	AOC3	Q16853	763 aa		11.07	□□□□□ -0.64
PSMD4-206	ENST00000453615	FAM89A	Q96GI7	184 aa		11.07	□□□□□ -0.64
PSMD4-206	ENST00000453615	ISCA1	Q9BUE6	129 aa		11.07	□□□□□ -0.64
PSMD4-206	ENST00000453615	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.07	□□□□□ -0.64
PSMD4-206	ENST00000453615	ZNRF3	Q9ULT6	936 aa		11.07	□□□□□ -0.64
PSMD4-206	ENST00000453615	TMEM88B	A6NKF7	163 aa		11.06	□□□□□ -0.64
PSMD4-206	ENST00000453615	TNIP1	Q15025	636 aa		11.06	□□□□□ -0.64
PSMD4-206	ENST00000453615	STK31	Q9BXU1	1019 aa		11.06	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms