RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RNF123Q5XPI4 1314 aa9.25□□□□□ -0.93
VPS41-208ENST00000448833 RIC1Q4ADV7 1423 aa9.24□□□□□ -0.93
VPS41-208ENST00000448833 HOXA10P31260 410 aaPredicted RBP9.24□□□□□ -0.93
VPS41-208ENST00000448833 PRELPP51888 382 aa9.24□□□□□ -0.93
VPS41-208ENST00000448833 CRY2Q49AN0 593 aa9.24□□□□□ -0.93
VPS41-208ENST00000448833 IFFO2Q5TF58 517 aa9.24□□□□□ -0.93
VPS41-208ENST00000448833 JDP2Q8WYK2 163 aa9.24□□□□□ -0.93
VPS41-208ENST00000448833 KLRG1Q96E93 195 aa9.24□□□□□ -0.93
VPS41-208ENST00000448833 RBM17Q96I25 401 aaKnown RBP9.24□□□□□ -0.93
VPS41-208ENST00000448833 NLRP3Q96P20 1036 aa9.24□□□□□ -0.93
VPS41-208ENST00000448833 VPS33BQ9H267 617 aa9.24□□□□□ -0.93
VPS41-208ENST00000448833 ANKRD36CQ5JPF3 1778 aa9.23□□□□□ -0.93
VPS41-208ENST00000448833 HOXB7P09629 217 aa9.23□□□□□ -0.93
VPS41-208ENST00000448833 EIF2S2P20042 333 aaKnown RBP9.23□□□□□ -0.93
VPS41-208ENST00000448833 CALD1Q05682 793 aaKnown RBP9.23□□□□□ -0.93
VPS41-208ENST00000448833 CHADLQ6NUI6 762 aa9.23□□□□□ -0.93
VPS41-208ENST00000448833 PNMA8AQ86V59 439 aaPredicted RBP9.23□□□□□ -0.93
VPS41-208ENST00000448833 ZNF34Q8IZ26 560 aa9.23□□□□□ -0.93
VPS41-208ENST00000448833 JMYQ8N9B5 988 aa9.23□□□□□ -0.93
VPS41-208ENST00000448833 CRAMP1Q96RY5 1269 aa9.23□□□□□ -0.93
VPS41-208ENST00000448833 PSMD1Q99460 953 aa9.23□□□□□ -0.93
VPS41-208ENST00000448833 THUMPD2Q9BTF0 503 aaKnown RBP9.23□□□□□ -0.93
VPS41-208ENST00000448833 ZBTB3Q9H5J0 574 aa9.23□□□□□ -0.93
VPS41-208ENST00000448833 CHL1O00533 1208 aa9.22□□□□□ -0.93
VPS41-208ENST00000448833 DDNO94850 711 aaPredicted RBP9.22□□□□□ -0.93
VPS41-208ENST00000448833 IARSP41252 1262 aaKnown RBP9.22□□□□□ -0.93
VPS41-208ENST00000448833 SLC10A5Q5PT55 438 aa9.22□□□□□ -0.93
VPS41-208ENST00000448833 TTLL7Q6ZT98 887 aa9.22□□□□□ -0.93
VPS41-208ENST00000448833 L3MBTL3Q96JM7 780 aaPredicted RBP9.22□□□□□ -0.93
VPS41-208ENST00000448833 UTP14AQ9BVJ6 771 aaKnown RBP9.22□□□□□ -0.93
VPS41-208ENST00000448833 DDX21Q9NR30 783 aaKnown RBP eCLIP9.22□□□□□ -0.93
VPS41-208ENST00000448833 PCNTO95613 3336 aa9.21□□□□□ -0.93
VPS41-208ENST00000448833 POTECB2RU33 542 aa9.21□□□□□ -0.94
VPS41-208ENST00000448833 BBOX1O75936 387 aa9.21□□□□□ -0.94
VPS41-208ENST00000448833 HSP90B1P14625 803 aaKnown RBP9.21□□□□□ -0.94
VPS41-208ENST00000448833 GPTP24298 496 aa9.21□□□□□ -0.94
VPS41-208ENST00000448833 EIF6P56537 245 aaKnown RBP9.21□□□□□ -0.94
VPS41-208ENST00000448833 NEUROD2Q15784 382 aa9.21□□□□□ -0.94
VPS41-208ENST00000448833 SUSD4Q5VX71 490 aa9.21□□□□□ -0.94
VPS41-208ENST00000448833 LDHDQ86WU2 507 aa9.21□□□□□ -0.94
VPS41-208ENST00000448833 NUTM1Q86Y26 1132 aa9.21□□□□□ -0.94
VPS41-208ENST00000448833 GPC2Q8N158 579 aa9.21□□□□□ -0.94
VPS41-208ENST00000448833 SYNE4Q8N205 404 aa9.21□□□□□ -0.94
VPS41-208ENST00000448833 SUPT20HQ8NEM7 779 aa9.21□□□□□ -0.94
VPS41-208ENST00000448833 DBF4Q9UBU7 674 aaPredicted RBP9.21□□□□□ -0.94
VPS41-208ENST00000448833 FZD9O00144 591 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 NTSR2O95665 410 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 TCIRG1Q13488 830 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 PDIA6Q15084 440 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 COPS6Q7L5N1 327 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 TMC4Q7Z404 712 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 SP7Q8TDD2 431 aaPredicted RBP9.2□□□□□ -0.94
VPS41-208ENST00000448833 CFAP44Q96MT7 982 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 ZNF277Q9NRM2 450 aaPredicted RBP9.2□□□□□ -0.94
VPS41-208ENST00000448833 CREBZFQ9NS37 354 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 HYPKQ9NX55 129 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 HACL1Q9UJ83 578 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 ADAMTS8Q9UP79 889 aa9.2□□□□□ -0.94
VPS41-208ENST00000448833 LAS1LQ9Y4W2 734 aaKnown RBP9.2□□□□□ -0.94
VPS41-208ENST00000448833 PPEF1O14829 653 aaPredicted RBP9.19□□□□□ -0.94
VPS41-208ENST00000448833 LMOD1P29536 600 aaPredicted RBP9.19□□□□□ -0.94
VPS41-208ENST00000448833 CCDC146Q8IYE0 955 aa9.19□□□□□ -0.94
VPS41-208ENST00000448833 TAF1DQ9H5J8 278 aaPredicted RBP9.19□□□□□ -0.94
VPS41-208ENST00000448833 PRKRIP1Q9H875 184 aaPredicted RBP9.19□□□□□ -0.94
VPS41-208ENST00000448833 UBN2Q6ZU65 1347 aa9.19□□□□□ -0.94
VPS41-208ENST00000448833 SH3TC1Q8TE82 1336 aa9.19□□□□□ -0.94
VPS41-208ENST00000448833 LAMB2P55268 1798 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 GNAI1P63096 354 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 AIMP1Q12904 312 aaKnown RBP9.18□□□□□ -0.94
VPS41-208ENST00000448833 HDGFL1Q5TGJ6 251 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 ANKRD13DQ6ZTN6 518 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 DDX46Q7L014 1031 aaKnown RBP9.18□□□□□ -0.94
VPS41-208ENST00000448833 LRP10Q7Z4F1 713 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 LARGE2Q8N3Y3 721 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 PLBD2Q8NHP8 589 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 XAGE3Q8WTP9 111 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 ABCC12Q96J65 1359 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 TRMT112Q9UI30 125 aaKnown RBP9.18□□□□□ -0.94
VPS41-208ENST00000448833 TRIM35Q9UPQ4 493 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 CLEC11AQ9Y240 323 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 ATP6V0A2Q9Y487 856 aa9.18□□□□□ -0.94
VPS41-208ENST00000448833 EPHX2P34913 555 aa9.17□□□□□ -0.94
VPS41-208ENST00000448833 NLRP10Q86W26 655 aa9.17□□□□□ -0.94
VPS41-208ENST00000448833 SP8Q8IXZ3 490 aa9.17□□□□□ -0.94
VPS41-208ENST00000448833 NIM1KQ8IY84 436 aa9.17□□□□□ -0.94
VPS41-208ENST00000448833 CACNA1FO60840 1977 aa9.16□□□□□ -0.94
VPS41-208ENST00000448833 TMEM88BA6NKF7 163 aa9.16□□□□□ -0.94
VPS41-208ENST00000448833 ZEB1P37275 1124 aaPredicted RBP9.16□□□□□ -0.94
VPS41-208ENST00000448833 HTRA3P83110 453 aa9.16□□□□□ -0.94
VPS41-208ENST00000448833 TRIM28Q13263 835 aaKnown RBP9.16□□□□□ -0.94
VPS41-208ENST00000448833 TNIP1Q15025 636 aa9.16□□□□□ -0.94
VPS41-208ENST00000448833 PROSER3Q2NL68 480 aa9.16□□□□□ -0.94
VPS41-208ENST00000448833 EAPPQ56P03 285 aaPredicted RBP9.16□□□□□ -0.94
VPS41-208ENST00000448833 DPP8Q6V1X1 898 aaPredicted RBP9.16□□□□□ -0.94
VPS41-208ENST00000448833 NECTIN2Q92692 538 aa9.16□□□□□ -0.94
VPS41-208ENST00000448833 IFT57Q9NWB7 429 aa9.16□□□□□ -0.94
VPS41-208ENST00000448833 CHPF2Q9P2E5 772 aa9.16□□□□□ -0.94
VPS41-208ENST00000448833 TRPM7Q96QT4 1865 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 ZNF541Q9H0D2 1346 aa9.15□□□□□ -0.94
VPS41-208ENST00000448833 PPIP5K2O43314 1243 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms