RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 CCAR1Q8IX12 1150 aaKnown RBP7.82□□□□□ -1.16
CSDE1-205ENST00000438362 SBNO1A3KN83 1393 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 AATKQ6ZMQ8 1374 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 GADD45BO75293 160 aaPredicted RBP7.81□□□□□ -1.16
CSDE1-205ENST00000438362 CFAP100Q494V2 611 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 RUFY3Q7L099 469 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 PCMTD1Q96MG8 357 aaPredicted RBP7.81□□□□□ -1.16
CSDE1-205ENST00000438362 DACH1Q9UI36 760 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 CCDC171Q6TFL3 1326 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 IBTKQ9P2D0 1353 aaPredicted RBP7.81□□□□□ -1.16
CSDE1-205ENST00000438362 GOLIM4O00461 696 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 GSDMDP57764 484 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 FAM177A1Q8N128 213 aaPredicted RBP7.81□□□□□ -1.16
CSDE1-205ENST00000438362 GPT2Q8TD30 523 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 RBM33Q96EV2 1170 aaKnown RBP7.81□□□□□ -1.16
CSDE1-205ENST00000438362 TRMT1Q9NXH9 659 aaKnown RBP7.81□□□□□ -1.16
CSDE1-205ENST00000438362 PALD1Q9ULE6 856 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 EFCAB6Q5THR3 1501 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 HOXC9P31274 260 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 HSP90B2PQ58FF3 399 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 UBXN4Q92575 508 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 OSBPL3Q9H4L5 887 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 CGNQ9P2M7 1197 aaKnown RBP7.81□□□□□ -1.16
CSDE1-205ENST00000438362 CWF19L2Q2TBE0 894 aaKnown RBP7.81□□□□□ -1.16
CSDE1-205ENST00000438362 ANKRD13DQ6ZTN6 518 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 DDX46Q7L014 1031 aaKnown RBP7.81□□□□□ -1.16
CSDE1-205ENST00000438362 CCDC85AQ96PX6 553 aaPredicted RBP7.81□□□□□ -1.16
CSDE1-205ENST00000438362 ACBD3Q9H3P7 528 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 AKAP2Q9Y2D5 859 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 PAXBP1Q9Y5B6 917 aa7.81□□□□□ -1.16
CSDE1-205ENST00000438362 ZCCHC11Q5TAX3 1644 aaKnown RBP7.8□□□□□ -1.16
CSDE1-205ENST00000438362 PTCH1Q13635 1447 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 SPHKAPQ2M3C7 1700 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 PLEKHG3A1L390 1219 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 CCDC69A6NI79 296 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 ATP5J2-PTCD1G3V325 749 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 ZNF500O60304 480 aaPredicted RBP7.8□□□□□ -1.16
CSDE1-205ENST00000438362 PTCD1O75127 700 aaKnown RBP7.8□□□□□ -1.16
CSDE1-205ENST00000438362 TOM1L2Q6ZVM7 507 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 ANKRD24Q8TF21 1146 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 NACAP1Q9BZK3 213 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 DNAJC25Q9H1X3 360 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 FAM135BQ49AJ0 1406 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 SSH2Q76I76 1423 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 MARCH6O60337 910 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 SLC3A2P08195 630 aaKnown RBP7.8□□□□□ -1.16
CSDE1-205ENST00000438362 C1QBPQ07021 282 aaKnown RBP7.8□□□□□ -1.16
CSDE1-205ENST00000438362 CHAMP1Q96JM3 812 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 LRRC2Q9BYS8 371 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 USP44Q9H0E7 712 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 MLH3Q9UHC1 1453 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 IDH1O75874 414 aaKnown RBP7.8□□□□□ -1.16
CSDE1-205ENST00000438362 HOXB7P09629 217 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 NBPF7P0C2Y1 421 aaPredicted RBP7.8□□□□□ -1.16
CSDE1-205ENST00000438362 COPS6Q7L5N1 327 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 PPFIBP1Q86W92 1011 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 SSH3Q8TE77 659 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 XAGE3Q8WTP9 111 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 PIBF1Q8WXW3 757 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 JARID2Q92833 1246 aaPredicted RBP7.8□□□□□ -1.16
CSDE1-205ENST00000438362 SMARCE1Q969G3 411 aa7.8□□□□□ -1.16
CSDE1-205ENST00000438362 GOLGA8BA8MQT2 603 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 PTGS1P23219 599 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 MCMDC2Q4G0Z9 681 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 TTLL5Q6EMB2 1281 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 Q6ZUG5 572 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 SIRT1Q96EB6 747 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 PPFIA3O75145 1194 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 CEP135Q66GS9 1140 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 ORC3Q9UBD5 711 aaPredicted RBP7.79□□□□□ -1.16
CSDE1-205ENST00000438362 ARHGEF10O15013 1369 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 ATP7BP35670 1465 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 NEO1Q92859 1461 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 SPDYE4A6NLX3 237 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 BIN1O00499 593 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 ZNF213O14771 459 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 SNRPA1P09661 255 aaKnown RBP7.79□□□□□ -1.16
CSDE1-205ENST00000438362 METTL24Q5JXM2 366 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 LUZP1Q86V48 1076 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 AMOTL1Q8IY63 956 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 STK11IPQ8N1F8 1099 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 NOC3LQ8WTT2 800 aaKnown RBP7.79□□□□□ -1.16
CSDE1-205ENST00000438362 WASF1Q92558 559 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 PRDM11Q9NQV5 511 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 USP16Q9Y5T5 823 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 E9PCH4 1651 aa7.79□□□□□ -1.16
CSDE1-205ENST00000438362 ARAP3Q8WWN8 1544 aa7.78□□□□□ -1.16
CSDE1-205ENST00000438362 SKILP12757 684 aa7.78□□□□□ -1.16
CSDE1-205ENST00000438362 PIP4K2AP48426 406 aaPredicted RBP7.78□□□□□ -1.16
CSDE1-205ENST00000438362 TMC6Q7Z403 805 aa7.78□□□□□ -1.16
CSDE1-205ENST00000438362 IFNL2Q8IZJ0 200 aa7.78□□□□□ -1.16
CSDE1-205ENST00000438362 STAP2Q9UGK3 403 aa7.78□□□□□ -1.16
CSDE1-205ENST00000438362 FAM177BA6PVY3 158 aa7.78□□□□□ -1.16
CSDE1-205ENST00000438362 POLR3DP05423 398 aaPredicted RBP7.78□□□□□ -1.16
CSDE1-205ENST00000438362 NUP133Q8WUM0 1156 aa7.78□□□□□ -1.16
CSDE1-205ENST00000438362 LRRC59Q96AG4 307 aaKnown RBP7.78□□□□□ -1.16
CSDE1-205ENST00000438362 ERCC6L2Q5T890 1561 aa7.78□□□□□ -1.16
CSDE1-205ENST00000438362 ZSCAN12O43309 604 aa7.78□□□□□ -1.16
CSDE1-205ENST00000438362 TOP1P11387 765 aaKnown RBP7.78□□□□□ -1.16
CSDE1-205ENST00000438362 SLC39A6Q13433 755 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 250.3 ms