RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CSRNP1Q96S65 589 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 PHACTR1Q9C0D0 580 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 NIF3L1Q9GZT8 377 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 VTI1BQ9UEU0 232 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 TGFBR3LH3BV60 316 aa6.21□□□□□ -1.42
HMGB3-203ENST00000430118 FANCCQ00597 558 aa6.21□□□□□ -1.42
HMGB3-203ENST00000430118 DNM1Q05193 864 aaKnown RBP6.21□□□□□ -1.42
HMGB3-203ENST00000430118 RAD51AP2Q09MP3 1159 aa6.21□□□□□ -1.42
HMGB3-203ENST00000430118 METTL16Q86W50 562 aaKnown RBP6.21□□□□□ -1.42
HMGB3-203ENST00000430118 TTC16Q8NEE8 873 aa6.21□□□□□ -1.42
HMGB3-203ENST00000430118 SNIP1Q8TAD8 396 aaKnown RBP6.21□□□□□ -1.42
HMGB3-203ENST00000430118 PIK3R5Q8WYR1 880 aa6.21□□□□□ -1.42
HMGB3-203ENST00000430118 EMID1Q96A84 441 aaPredicted RBP6.21□□□□□ -1.42
HMGB3-203ENST00000430118 NGLY1Q96IV0 654 aa6.21□□□□□ -1.42
HMGB3-203ENST00000430118 KLF16Q9BXK1 252 aaPredicted RBP6.21□□□□□ -1.42
HMGB3-203ENST00000430118 NLRP2Q9NX02 1062 aa6.21□□□□□ -1.42
HMGB3-203ENST00000430118 SPG7Q9UQ90 795 aa6.21□□□□□ -1.42
HMGB3-203ENST00000430118 DIP2BQ9P265 1576 aa6.21□□□□□ -1.42
HMGB3-203ENST00000430118 LCE2BO14633 110 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 ALDH1A1P00352 501 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 ZNF76P36508 570 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 NBPF1Q3BBV0 1214 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 FAM26DQ5JW98 314 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 GNASQ5JWF2 1037 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 SPRYD7Q5W111 196 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 TMEM214Q6NUQ4 689 aaKnown RBP6.2□□□□□ -1.42
HMGB3-203ENST00000430118 NBPF10Q6P3W6 841 aaKnown RBP6.2□□□□□ -1.42
HMGB3-203ENST00000430118 ZNF598Q86UK7 904 aaKnown RBP6.2□□□□□ -1.42
HMGB3-203ENST00000430118 ATCAYQ86WG3 371 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 TREML1Q86YW5 311 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 ARMC5Q96C12 935 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 GRIP2Q9C0E4 1043 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 AK5Q9Y6K8 562 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 SHROOM2Q13796 1616 aa6.2□□□□□ -1.42
HMGB3-203ENST00000430118 ADAMTS12P58397 1594 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 NUP160Q12769 1436 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 ABCA5Q8WWZ7 1642 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 MEN1O00255 615 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 RNF144AP50876 292 aaPredicted RBP6.19□□□□□ -1.42
HMGB3-203ENST00000430118 WDR44Q5JSH3 913 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 SH3PXD2AQ5TCZ1 1133 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 XKR5Q6UX68 686 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 NT5DC4Q86YG4 428 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 ITPKCQ96DU7 683 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 ANKIB1Q9P2G1 1089 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 PDZRN3Q9UPQ7 1066 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 HCN4Q9Y3Q4 1203 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 ABCA10Q8WWZ4 1543 aa6.19□□□□□ -1.42
HMGB3-203ENST00000430118 HECW2Q9P2P5 1572 aa6.18□□□□□ -1.42
HMGB3-203ENST00000430118 SPATA31C2B4DYI2 1134 aa6.18□□□□□ -1.42
HMGB3-203ENST00000430118 CPNE3O75131 537 aaKnown RBP6.18□□□□□ -1.42
HMGB3-203ENST00000430118 ZIC2O95409 532 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-203ENST00000430118 GNL2Q13823 731 aaKnown RBP6.18□□□□□ -1.42
HMGB3-203ENST00000430118 MEIOBQ8N635 442 aa6.18□□□□□ -1.42
HMGB3-203ENST00000430118 NUDT16Q96DE0 195 aaKnown RBP6.18□□□□□ -1.42
HMGB3-203ENST00000430118 CFHR5Q9BXR6 569 aa6.18□□□□□ -1.42
HMGB3-203ENST00000430118 SRCIN1Q9C0H9 1055 aa6.18□□□□□ -1.42
HMGB3-203ENST00000430118 CCSER2Q9H7U1 834 aa6.18□□□□□ -1.42
HMGB3-203ENST00000430118 C11orf16Q9NQ32 467 aa6.18□□□□□ -1.42
HMGB3-203ENST00000430118 KLK14Q9P0G3 267 aa6.18□□□□□ -1.42
HMGB3-203ENST00000430118 WWC3Q9ULE0 1092 aa6.18□□□□□ -1.42
HMGB3-203ENST00000430118 FNDC3AQ9Y2H6 1198 aaKnown RBP6.18□□□□□ -1.42
HMGB3-203ENST00000430118 ADGRL1O94910 1474 aa6.17□□□□□ -1.42
HMGB3-203ENST00000430118 CUX1P39880 1505 aa6.17□□□□□ -1.42
HMGB3-203ENST00000430118 EIF1AYO14602 144 aaKnown RBP6.17□□□□□ -1.42
HMGB3-203ENST00000430118 MICAL2O94851 1124 aa6.17□□□□□ -1.42
HMGB3-203ENST00000430118 TIMP2P16035 220 aa6.17□□□□□ -1.42
HMGB3-203ENST00000430118 TATP17735 454 aaPredicted RBP6.17□□□□□ -1.42
HMGB3-203ENST00000430118 CBLBQ13191 982 aa6.17□□□□□ -1.42
HMGB3-203ENST00000430118 ZNF697Q5TEC3 545 aa6.17□□□□□ -1.42
HMGB3-203ENST00000430118 PDE12Q6L8Q7 609 aaKnown RBP6.17□□□□□ -1.42
HMGB3-203ENST00000430118 RHPN1Q8TCX5 695 aa6.17□□□□□ -1.42
HMGB3-203ENST00000430118 FAM161BQ96MY7 647 aa6.17□□□□□ -1.42
HMGB3-203ENST00000430118 TINF2Q9BSI4 451 aa6.17□□□□□ -1.42
HMGB3-203ENST00000430118 TSEN34Q9BSV6 310 aaKnown RBP6.17□□□□□ -1.42
HMGB3-203ENST00000430118 EIF4BP23588 611 aaKnown RBP6.16□□□□□ -1.42
HMGB3-203ENST00000430118 WDR4P57081 412 aaKnown RBP6.16□□□□□ -1.42
HMGB3-203ENST00000430118 PTPN12Q05209 780 aaKnown RBP6.16□□□□□ -1.42
HMGB3-203ENST00000430118 SLC27A3Q5K4L6 730 aa6.16□□□□□ -1.42
HMGB3-203ENST00000430118 GPR152Q8TDT2 470 aa6.16□□□□□ -1.42
HMGB3-203ENST00000430118 SNX29Q8TEQ0 813 aa6.16□□□□□ -1.42
HMGB3-203ENST00000430118 FBXO41Q8TF61 875 aa6.16□□□□□ -1.42
HMGB3-203ENST00000430118 C7orf43Q8WVR3 580 aa6.16□□□□□ -1.42
HMGB3-203ENST00000430118 PUS7Q96PZ0 661 aaKnown RBP6.16□□□□□ -1.42
HMGB3-203ENST00000430118 GMLQ99445 158 aa6.16□□□□□ -1.42
HMGB3-203ENST00000430118 BCS1LQ9Y276 419 aa6.16□□□□□ -1.42
HMGB3-203ENST00000430118 FHAD1B1AJZ9 1412 aa6.16□□□□□ -1.42
HMGB3-203ENST00000430118 TXLNAP40222 546 aa6.15□□□□□ -1.42
HMGB3-203ENST00000430118 ST13P50502 369 aaKnown RBP6.15□□□□□ -1.42
HMGB3-203ENST00000430118 ARSDP51689 593 aa6.15□□□□□ -1.42
HMGB3-203ENST00000430118 RELBQ01201 579 aa6.15□□□□□ -1.42
HMGB3-203ENST00000430118 C4orf17Q53FE4 359 aa6.15□□□□□ -1.42
HMGB3-203ENST00000430118 PKD2L1Q9P0L9 805 aa6.15□□□□□ -1.42
HMGB3-203ENST00000430118 DMGDHQ9UI17 866 aaKnown RBP6.15□□□□□ -1.42
HMGB3-203ENST00000430118 PRG4Q92954 1404 aaPredicted RBP6.15□□□□□ -1.43
HMGB3-203ENST00000430118 POTECB2RU33 542 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 SPINT1O43278 529 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 HSP90B1P14625 803 aaKnown RBP6.14□□□□□ -1.43
HMGB3-203ENST00000430118 EPB42P16452 691 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 PLA2G4AP47712 749 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms