RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 CDC5LQ99459 802 aaKnown RBP15.24■□□□□ 0.03
SPG11-202ENST00000427534 ZYXQ15942 572 aaKnown RBP15.23■□□□□ 0.03
SPG11-202ENST00000427534 CIZ1Q9ULV3 898 aaPredicted RBP15.23■□□□□ 0.03
SPG11-202ENST00000427534 RPRD2Q5VT52 1461 aaKnown RBP15.23■□□□□ 0.03
SPG11-202ENST00000427534 FLIIQ13045 1269 aa15.23■□□□□ 0.03
SPG11-202ENST00000427534 NECAB1Q8N987 351 aa15.23■□□□□ 0.03
SPG11-202ENST00000427534 CNNM3Q8NE01 707 aa15.23■□□□□ 0.03
SPG11-202ENST00000427534 ZFP91Q96JP5 570 aaPredicted RBP15.23■□□□□ 0.03
SPG11-202ENST00000427534 KRT32Q14532 448 aa15.23■□□□□ 0.03
SPG11-202ENST00000427534 PLIN2Q99541 437 aa15.23■□□□□ 0.03
SPG11-202ENST00000427534 SLC4A4Q9Y6R1 1079 aa15.23■□□□□ 0.03
SPG11-202ENST00000427534 HMGN5P82970 282 aaKnown RBP15.23■□□□□ 0.03
SPG11-202ENST00000427534 PROCA1Q8NCQ7 364 aaPredicted RBP15.23■□□□□ 0.03
SPG11-202ENST00000427534 SIRT1Q96EB6 747 aa15.23■□□□□ 0.03
SPG11-202ENST00000427534 FAM135AQ9P2D6 1515 aa15.23■□□□□ 0.03
SPG11-202ENST00000427534 TMCO5BA8MYB1 307 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 AFMP43652 599 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 SCAF11Q99590 1463 aaKnown RBP15.22■□□□□ 0.03
SPG11-202ENST00000427534 CSPG5O95196 566 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 SPA17Q15506 151 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 MFSD6Q6ZSS7 791 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 ZCRB1Q8TBF4 217 aaKnown RBP15.22■□□□□ 0.03
SPG11-202ENST00000427534 DYDC1Q8WWB3 177 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 HYPKQ9NX55 129 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 GLRX3O76003 335 aaKnown RBP15.22■□□□□ 0.03
SPG11-202ENST00000427534 FNBP4Q8N3X1 1017 aaPredicted RBP15.22■□□□□ 0.03
SPG11-202ENST00000427534 GOLGA6L10A0A0M3HER8 536 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 RXRAP19793 462 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 EIF6P56537 245 aaKnown RBP15.22■□□□□ 0.03
SPG11-202ENST00000427534 FKBP15Q5T1M5 1219 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 PA2G4Q9UQ80 394 aaKnown RBP15.22■□□□□ 0.03
SPG11-202ENST00000427534 USP16Q9Y5T5 823 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 MTIF2P46199 727 aaKnown RBP15.22■□□□□ 0.03
SPG11-202ENST00000427534 CCDC40Q4G0X9 1142 aa15.22■□□□□ 0.03
SPG11-202ENST00000427534 SRRTQ9BXP5 876 aaKnown RBP15.22■□□□□ 0.03
SPG11-202ENST00000427534 NSFL1CQ9UNZ2 370 aaKnown RBP15.22■□□□□ 0.03
SPG11-202ENST00000427534 NOS1P29475 1434 aa15.21■□□□□ 0.03
SPG11-202ENST00000427534 TMEM110-MUSTN1A8MSY1 372 aa15.21■□□□□ 0.03
SPG11-202ENST00000427534 BAG4O95429 457 aaKnown RBP15.21■□□□□ 0.03
SPG11-202ENST00000427534 XAGE3Q8WTP9 111 aa15.21■□□□□ 0.03
SPG11-202ENST00000427534 CALRP27797 417 aaKnown RBP15.21■□□□□ 0.03
SPG11-202ENST00000427534 ARL1P40616 181 aaPredicted RBP15.21■□□□□ 0.03
SPG11-202ENST00000427534 PARP3Q9Y6F1 533 aa15.21■□□□□ 0.03
SPG11-202ENST00000427534 CCP110O43303 1012 aa15.21■□□□□ 0.03
SPG11-202ENST00000427534 DDB1Q16531 1140 aa15.21■□□□□ 0.03
SPG11-202ENST00000427534 SLF2Q8IX21 1173 aa15.21■□□□□ 0.03
SPG11-202ENST00000427534 GJB2P29033 226 aa15.21■□□□□ 0.02
SPG11-202ENST00000427534 MAP3K11Q16584 847 aa15.21■□□□□ 0.02
SPG11-202ENST00000427534 DBF4Q9UBU7 674 aaPredicted RBP15.2■□□□□ 0.02
SPG11-202ENST00000427534 MRPS9P82933 396 aaKnown RBP15.2■□□□□ 0.02
SPG11-202ENST00000427534 MCM4P33991 863 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 MSL1Q68DK7 614 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 C14orf93Q9H972 538 aaKnown RBP15.2■□□□□ 0.02
SPG11-202ENST00000427534 URB2Q14146 1524 aaKnown RBP15.2■□□□□ 0.02
SPG11-202ENST00000427534 BAG3O95817 575 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 CCDC152Q4G0S7 254 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 COPS6Q7L5N1 327 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 OGFOD1Q8N543 542 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 RBM27Q9P2N5 1060 aaKnown RBP15.2■□□□□ 0.02
SPG11-202ENST00000427534 SORBS3O60504 671 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 TOM1O60784 492 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 NOP2P46087 812 aaKnown RBP15.2■□□□□ 0.02
SPG11-202ENST00000427534 ZKSCAN3Q9BRR0 538 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 GRPEL1Q9HAV7 217 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 MBIPQ9NS73 344 aa15.2■□□□□ 0.02
SPG11-202ENST00000427534 DISP3Q9P2K9 1392 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 LMAN1P49257 510 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 UQCRHLA0A096LP55 91 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 UQCRHP07919 91 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 METAP2P50579 478 aaKnown RBP eCLIP15.19■□□□□ 0.02
SPG11-202ENST00000427534 EHMT1Q9H9B1 1298 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 MSH6P52701 1360 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 PDE4BQ07343 736 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 FSIP1Q8NA03 581 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 EP400NLQ6ZTU2 488 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 SYNCQ9H7C4 482 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 SSFA2P28290 1259 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 ZSWIM4Q9H7M6 989 aa15.19■□□□□ 0.02
SPG11-202ENST00000427534 LRPPRCP42704 1394 aaKnown RBP15.18■□□□□ 0.02
SPG11-202ENST00000427534 POLD1P28340 1107 aa15.18■□□□□ 0.02
SPG11-202ENST00000427534 NFATC2IPQ8NCF5 419 aa15.18■□□□□ 0.02
SPG11-202ENST00000427534 RNF216Q9NWF9 866 aaPredicted RBP15.18■□□□□ 0.02
SPG11-202ENST00000427534 ARID5AQ03989 594 aa15.18■□□□□ 0.02
SPG11-202ENST00000427534 CASQ1P31415 396 aa15.18■□□□□ 0.02
SPG11-202ENST00000427534 SMTNL1A8MU46 457 aa15.18■□□□□ 0.02
SPG11-202ENST00000427534 CALML4Q96GE6 196 aa15.18■□□□□ 0.02
SPG11-202ENST00000427534 DTNBO60941 627 aa15.17■□□□□ 0.02
SPG11-202ENST00000427534 NSD2O96028 1365 aa15.17■□□□□ 0.02
SPG11-202ENST00000427534 GNPATO15228 680 aa15.17■□□□□ 0.02
SPG11-202ENST00000427534 EAPPQ56P03 285 aaPredicted RBP15.17■□□□□ 0.02
SPG11-202ENST00000427534 DZIP3Q86Y13 1208 aaKnown RBP15.17■□□□□ 0.02
SPG11-202ENST00000427534 EZRP15311 586 aaKnown RBP15.17■□□□□ 0.02
SPG11-202ENST00000427534 RAB3GAP1Q15042 981 aa15.17■□□□□ 0.02
SPG11-202ENST00000427534 IFIT1BQ5T764 474 aaKnown RBP15.17■□□□□ 0.02
SPG11-202ENST00000427534 HARSP12081 509 aaKnown RBP15.17■□□□□ 0.02
SPG11-202ENST00000427534 ANKRD13DQ6ZTN6 518 aa15.17■□□□□ 0.02
SPG11-202ENST00000427534 OTUD6BQ8N6M0 293 aa15.17■□□□□ 0.02
SPG11-202ENST00000427534 HDAC9Q9UKV0 1011 aa15.17■□□□□ 0.02
SPG11-202ENST00000427534 KIAA0754O94854 1291 aa15.17■□□□□ 0.02
SPG11-202ENST00000427534 ZNF526Q8TF50 670 aaPredicted RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms