RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 EPHA10Q5JZY3 1008 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 UBE3BQ7Z3V4 1068 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 SPATA32Q96LK8 384 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.3□□□□□ -0.76
USP40-203ENST00000427112 GORABQ5T7V8 394 aa10.29□□□□□ -0.76
USP40-203ENST00000427112 ECHDC1Q9NTX5 307 aa10.29□□□□□ -0.76
USP40-203ENST00000427112 CEP170BQ9Y4F5 1589 aaPredicted RBP10.29□□□□□ -0.76
USP40-203ENST00000427112 RIOK3O14730 519 aaKnown RBP10.29□□□□□ -0.76
USP40-203ENST00000427112 PHF14O94880 888 aa10.29□□□□□ -0.76
USP40-203ENST00000427112 BLOC1S2Q6QNY1 142 aa10.29□□□□□ -0.76
USP40-203ENST00000427112 SSH3Q8TE77 659 aa10.29□□□□□ -0.76
USP40-203ENST00000427112 BRF1Q92994 677 aa10.29□□□□□ -0.76
USP40-203ENST00000427112 DIP2CQ9Y2E4 1556 aa10.29□□□□□ -0.76
USP40-203ENST00000427112 NR1I2O75469 434 aa10.29□□□□□ -0.76
USP40-203ENST00000427112 PDIA4P13667 645 aaKnown RBP10.29□□□□□ -0.76
USP40-203ENST00000427112 EIF4A1P60842 406 aaKnown RBP10.29□□□□□ -0.76
USP40-203ENST00000427112 BEND3Q5T5X7 828 aa10.29□□□□□ -0.76
USP40-203ENST00000427112 KCNF1Q9H3M0 494 aa10.29□□□□□ -0.76
USP40-203ENST00000427112 RXRAP19793 462 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 TNNT3P45378 269 aaPredicted RBP10.28□□□□□ -0.76
USP40-203ENST00000427112 TIMM10P62072 90 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 ATP2B3Q16720 1220 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 ZNF594Q96JF6 807 aaPredicted RBP10.28□□□□□ -0.76
USP40-203ENST00000427112 NUP62CLQ9H1M0 184 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 CDK12Q9NYV4 1490 aaPredicted RBP10.28□□□□□ -0.76
USP40-203ENST00000427112 LMTK2Q8IWU2 1503 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 MCM2P49736 904 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 UBE2HP62256 183 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 FAM177A1Q8N128 213 aaPredicted RBP10.28□□□□□ -0.76
USP40-203ENST00000427112 FAM184AQ8NB25 1140 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 NFATC2IPQ8NCF5 419 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 OSBPL3Q9H4L5 887 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 FLT4P35916 1363 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 SALL3Q9BXA9 1300 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 ZNF500O60304 480 aaPredicted RBP10.28□□□□□ -0.76
USP40-203ENST00000427112 GLRX3O76003 335 aaKnown RBP10.28□□□□□ -0.76
USP40-203ENST00000427112 SASH1O94885 1247 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 POLR3DP05423 398 aaPredicted RBP10.28□□□□□ -0.76
USP40-203ENST00000427112 NCBP3Q53F19 620 aaKnown RBP10.28□□□□□ -0.76
USP40-203ENST00000427112 CLEC17AQ6ZS10 378 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 COPS6Q7L5N1 327 aa10.28□□□□□ -0.76
USP40-203ENST00000427112 ATP7BP35670 1465 aa10.27□□□□□ -0.76
USP40-203ENST00000427112 KDM4FA0A1W2PPD8 638 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 VPS53Q5VIR6 699 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 CCDC144CPQ8IYA2 1237 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 XAGE3Q8WTP9 111 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 CHMP4AQ9BY43 222 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 APOBRQ0VD83 1088 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 TRERF1Q96PN7 1200 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 SLC27A2O14975 620 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 TYRO3Q06418 890 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 TFCP2Q12800 502 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 TTLL5Q6EMB2 1281 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 ZNF710Q8N1W2 664 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 BCL2L12Q9HB09 334 aa10.27□□□□□ -0.77
USP40-203ENST00000427112 GOLIM4O00461 696 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 CSPP1Q1MSJ5 1256 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 TTC14Q96N46 770 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 DBNDD2Q9BQY9 259 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 TMEM131LA2VDJ0 1609 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 ATP2B1P20020 1258 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 KRT85P78386 507 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 FKBP4Q02790 459 aaKnown RBP eCLIP10.26□□□□□ -0.77
USP40-203ENST00000427112 TPD52L1Q16890 204 aaPredicted RBP10.26□□□□□ -0.77
USP40-203ENST00000427112 Q6ZUG5 572 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 CCDC82Q8N4S0 544 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 AXIN2Q9Y2T1 843 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 KIAA0232Q92628 1395 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 MAP3K5Q99683 1374 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 USP6P35125 1406 aa10.26□□□□□ -0.77
USP40-203ENST00000427112 AATKQ6ZMQ8 1374 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 CCDC192P0DO97 292 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 GOLGA8FQ08AF8 430 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 GOLGA8DPQ0D2H9 430 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 MAP3K11Q16584 847 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 KIF3AQ9Y496 699 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 CCDC171Q6TFL3 1326 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 RUFY2Q8WXA3 655 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 GPATCH3Q96I76 525 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 ZBTB3Q9H5J0 574 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 CBX8Q9HC52 389 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 PHF8Q9UPP1 1060 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 TNRQ92752 1358 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 INTS4Q96HW7 963 aaKnown RBP10.25□□□□□ -0.77
USP40-203ENST00000427112 ARAP3Q8WWN8 1544 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 IGSF1Q8N6C5 1336 aa10.25□□□□□ -0.77
USP40-203ENST00000427112 USP27XA6NNY8 438 aa10.24□□□□□ -0.77
USP40-203ENST00000427112 VGLL3A8MV65 326 aa10.24□□□□□ -0.77
USP40-203ENST00000427112 CHAF1AQ13111 956 aaPredicted RBP10.24□□□□□ -0.77
USP40-203ENST00000427112 STAP2Q9UGK3 403 aa10.24□□□□□ -0.77
USP40-203ENST00000427112 ME1P48163 572 aa10.24□□□□□ -0.77
USP40-203ENST00000427112 ZNF165P49910 485 aa10.24□□□□□ -0.77
USP40-203ENST00000427112 PLEKHG3A1L390 1219 aa10.24□□□□□ -0.77
USP40-203ENST00000427112 DLC1Q96QB1 1528 aa10.24□□□□□ -0.77
USP40-203ENST00000427112 BECN2A8MW95 431 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 GRM8O00222 908 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 ANAPC15P60006 121 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 PDCL2Q8N4E4 241 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 KIF20BQ96Q89 1820 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 WASHC4Q2M389 1173 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms