RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 NMIQ13287 307 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-204ENST00000412568 SPC24Q8NBT2 197 aa13.2□□□□□ -0.3
PTPRF-204ENST00000412568 JAG2Q9Y219 1238 aa13.2□□□□□ -0.3
PTPRF-204ENST00000412568 FAM135BQ49AJ0 1406 aa13.2□□□□□ -0.3
PTPRF-204ENST00000412568 ATP2B3Q16720 1220 aa13.2□□□□□ -0.3
PTPRF-204ENST00000412568 CAVIN4Q5BKX8 364 aa13.2□□□□□ -0.3
PTPRF-204ENST00000412568 CROCC2H7BZ55 1655 aa13.2□□□□□ -0.3
PTPRF-204ENST00000412568 ZNF213O14771 459 aa13.2□□□□□ -0.3
PTPRF-204ENST00000412568 BRF1Q92994 677 aa13.2□□□□□ -0.3
PTPRF-204ENST00000412568 PCDH11XQ9BZA7 1347 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 PCDH11YQ9BZA8 1340 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 KIAA0232Q92628 1395 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 SLC5A1P13866 664 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 CCDC173Q0VFZ6 552 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 MAP3K12Q12852 859 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-204ENST00000412568 SNX21Q969T3 373 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 AXIN2Q9Y2T1 843 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 IGSF1Q8N6C5 1336 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 ZNF335Q9H4Z2 1342 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-204ENST00000412568 ARHGEF10O15013 1369 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 FAM98CQ17RN3 349 aaKnown RBP13.19□□□□□ -0.3
PTPRF-204ENST00000412568 PKNOX2Q96KN3 472 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 DBNDD2Q9BQY9 259 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 RBM27Q9P2N5 1060 aaKnown RBP13.19□□□□□ -0.3
PTPRF-204ENST00000412568 ABCA9Q8IUA7 1624 aa13.19□□□□□ -0.3
PTPRF-204ENST00000412568 ESPNB1AK53 854 aa13.18□□□□□ -0.3
PTPRF-204ENST00000412568 IRS4O14654 1257 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-204ENST00000412568 PHKG2P15735 406 aa13.18□□□□□ -0.3
PTPRF-204ENST00000412568 NBPF5PQ86XG9 351 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-204ENST00000412568 TRIM5Q9C035 493 aa13.18□□□□□ -0.3
PTPRF-204ENST00000412568 SHROOM2Q13796 1616 aa13.18□□□□□ -0.3
PTPRF-204ENST00000412568 ABCC4O15439 1325 aa13.18□□□□□ -0.3
PTPRF-204ENST00000412568 RANBP6O60518 1105 aaKnown RBP13.18□□□□□ -0.3
PTPRF-204ENST00000412568 GJB2P29033 226 aa13.18□□□□□ -0.3
PTPRF-204ENST00000412568 TTLL7Q6ZT98 887 aa13.18□□□□□ -0.3
PTPRF-204ENST00000412568 AATKQ6ZMQ8 1374 aa13.18□□□□□ -0.3
PTPRF-204ENST00000412568 CCDC129Q6ZRS4 1044 aa13.18□□□□□ -0.3
PTPRF-204ENST00000412568 ZSCAN29Q8IWY8 852 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-204ENST00000412568 METTL22Q9BUU2 404 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-204ENST00000412568 USP26Q9BXU7 913 aa13.18□□□□□ -0.3
PTPRF-204ENST00000412568 C6orf229H3BNL8 230 aa13.17□□□□□ -0.3
PTPRF-204ENST00000412568 RFC4P35249 363 aa13.17□□□□□ -0.3
PTPRF-204ENST00000412568 TRIM22Q8IYM9 498 aa13.17□□□□□ -0.3
PTPRF-204ENST00000412568 AK7Q96M32 723 aa13.17□□□□□ -0.3
PTPRF-204ENST00000412568 XBP1P17861 261 aa13.17□□□□□ -0.3
PTPRF-204ENST00000412568 RBM10P98175 930 aaKnown RBP13.17□□□□□ -0.3
PTPRF-204ENST00000412568 NEK1Q96PY6 1258 aa13.17□□□□□ -0.3
PTPRF-204ENST00000412568 TNMDQ9H2S6 317 aa13.17□□□□□ -0.3
PTPRF-204ENST00000412568 CEP152O94986 1710 aa13.17□□□□□ -0.3
PTPRF-204ENST00000412568 SPHKAPQ2M3C7 1700 aa13.17□□□□□ -0.3
PTPRF-204ENST00000412568 GSPT1P15170 499 aaKnown RBP13.17□□□□□ -0.3
PTPRF-204ENST00000412568 IL15P40933 162 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-204ENST00000412568 GCKRQ14397 625 aa13.17□□□□□ -0.3
PTPRF-204ENST00000412568 NPHP4O75161 1426 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-204ENST00000412568 FAM182BQ5T319 152 aa13.16□□□□□ -0.3
PTPRF-204ENST00000412568 SLC9C2Q5TAH2 1124 aa13.16□□□□□ -0.3
PTPRF-204ENST00000412568 MICU3Q86XE3 530 aa13.16□□□□□ -0.3
PTPRF-204ENST00000412568 FAM227BQ96M60 508 aa13.16□□□□□ -0.3
PTPRF-204ENST00000412568 PANK2Q9BZ23 570 aa13.16□□□□□ -0.3
PTPRF-204ENST00000412568 RTL1A6NKG5 1358 aa13.16□□□□□ -0.3
PTPRF-204ENST00000412568 SLC3A2P08195 630 aaKnown RBP13.16□□□□□ -0.3
PTPRF-204ENST00000412568 ZNF853P0CG23 659 aa13.16□□□□□ -0.3
PTPRF-204ENST00000412568 KCNQ4P56696 695 aa13.16□□□□□ -0.3
PTPRF-204ENST00000412568 MADDQ8WXG6 1647 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 ATP7BP35670 1465 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 GOLGA8BA8MQT2 603 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 RBM25P49756 843 aaKnown RBP13.15□□□□□ -0.3
PTPRF-204ENST00000412568 DZIP1Q86YF9 867 aaKnown RBP13.15□□□□□ -0.3
PTPRF-204ENST00000412568 ZNF396Q96N95 335 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-204ENST00000412568 PDE4CQ08493 712 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 ZNF771Q7L3S4 317 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-204ENST00000412568 SIRT2Q8IXJ6 389 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 PLBD2Q8NHP8 589 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 CCDC39Q9UFE4 941 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 IFIT3O14879 490 aaKnown RBP13.15□□□□□ -0.3
PTPRF-204ENST00000412568 STX6O43752 255 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 XRCC6P12956 609 aaKnown RBP eCLIP13.15□□□□□ -0.3
PTPRF-204ENST00000412568 USP5P45974 858 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 BRMS1Q9HCU9 246 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 PAG1Q9NWQ8 432 aa13.15□□□□□ -0.3
PTPRF-204ENST00000412568 CDC5LQ99459 802 aaKnown RBP13.14□□□□□ -0.31
PTPRF-204ENST00000412568 ASAP1Q9ULH1 1129 aa13.14□□□□□ -0.31
PTPRF-204ENST00000412568 ALKQ9UM73 1620 aa13.14□□□□□ -0.31
PTPRF-204ENST00000412568 CKAP2LQ8IYA6 745 aa13.14□□□□□ -0.31
PTPRF-204ENST00000412568 POLR3DP05423 398 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-204ENST00000412568 SF3B2Q13435 895 aaKnown RBP13.14□□□□□ -0.31
PTPRF-204ENST00000412568 CCAR2Q8N163 923 aaKnown RBP13.14□□□□□ -0.31
PTPRF-204ENST00000412568 RPGRQ92834 1020 aaKnown RBP13.14□□□□□ -0.31
PTPRF-204ENST00000412568 SETDB2Q96T68 719 aa13.14□□□□□ -0.31
PTPRF-204ENST00000412568 GLI2P10070 1586 aa13.14□□□□□ -0.31
PTPRF-204ENST00000412568 HOXB7P09629 217 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 AK2P54819 239 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 PCMTD1Q96MG8 357 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-204ENST00000412568 ERBB3P21860 1342 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 A0A1B0GUL7 405 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 LETM1O95202 739 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-204ENST00000412568 CCDC152Q4G0S7 254 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 MIGA1Q8NAN2 632 aa13.13□□□□□ -0.31
PTPRF-204ENST00000412568 SH2B1Q9NRF2 756 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms