RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 COPS6Q7L5N1 327 aa29.1■■■□□ 2.25
MSH6-202ENST00000411819 DDX21Q9NR30 783 aaKnown RBP eCLIP29.09■■■□□ 2.25
MSH6-202ENST00000411819 DDNO94850 711 aaPredicted RBP29.08■■■□□ 2.25
MSH6-202ENST00000411819 HTRA3P83110 453 aa29.08■■■□□ 2.25
MSH6-202ENST00000411819 HDGFL1Q5TGJ6 251 aa29.08■■■□□ 2.25
MSH6-202ENST00000411819 UTP14AQ9BVJ6 771 aaKnown RBP29.08■■■□□ 2.25
MSH6-202ENST00000411819 CHPF2Q9P2E5 772 aa29.08■■■□□ 2.25
MSH6-202ENST00000411819 POTECB2RU33 542 aa29.07■■■□□ 2.24
MSH6-202ENST00000411819 HSP90AB3PQ58FF7 597 aa29.07■■■□□ 2.24
MSH6-202ENST00000411819 RBM17Q96I25 401 aaKnown RBP29.06■■■□□ 2.24
MSH6-202ENST00000411819 CFAP44Q96MT7 982 aa29.06■■■□□ 2.24
MSH6-202ENST00000411819 APAF1O14727 1248 aa29.05■■■□□ 2.24
MSH6-202ENST00000411819 HOXA10P31260 410 aaPredicted RBP29.05■■■□□ 2.24
MSH6-202ENST00000411819 HOXB7P09629 217 aa29.04■■■□□ 2.24
MSH6-202ENST00000411819 IARSP41252 1262 aaKnown RBP29.04■■■□□ 2.24
MSH6-202ENST00000411819 C3orf67Q6ZVT6 689 aa29.04■■■□□ 2.24
MSH6-202ENST00000411819 SYNE4Q8N205 404 aa29.04■■■□□ 2.24
MSH6-202ENST00000411819 NLRP3Q96P20 1036 aa29.04■■■□□ 2.24
MSH6-202ENST00000411819 TCERG1O14776 1098 aaKnown RBP29.03■■■□□ 2.24
MSH6-202ENST00000411819 MBIPQ9NS73 344 aa29.03■■■□□ 2.24
MSH6-202ENST00000411819 LAMB2P55268 1798 aa29.03■■■□□ 2.24
MSH6-202ENST00000411819 SNED1Q8TER0 1413 aa29.03■■■□□ 2.24
MSH6-202ENST00000411819 RNF123Q5XPI4 1314 aa29.02■■■□□ 2.24
MSH6-202ENST00000411819 ZNF541Q9H0D2 1346 aa29.02■■■□□ 2.24
MSH6-202ENST00000411819 PPEF1O14829 653 aaPredicted RBP29.02■■■□□ 2.24
MSH6-202ENST00000411819 CC2D2BQ6DHV5 1058 aa29.02■■■□□ 2.24
MSH6-202ENST00000411819 DNAJC5GQ8N7S2 189 aa29.02■■■□□ 2.24
MSH6-202ENST00000411819 CRAMP1Q96RY5 1269 aa29.02■■■□□ 2.24
MSH6-202ENST00000411819 DUSP27Q5VZP5 1158 aa29.01■■■□□ 2.23
MSH6-202ENST00000411819 NLRP10Q86W26 655 aa29.01■■■□□ 2.23
MSH6-202ENST00000411819 PSMD1Q99460 953 aa29.01■■■□□ 2.23
MSH6-202ENST00000411819 SCN4AP35499 1836 aa29■■■□□ 2.23
MSH6-202ENST00000411819 TCIRG1Q13488 830 aa29■■■□□ 2.23
MSH6-202ENST00000411819 DBF4Q9UBU7 674 aaPredicted RBP29■■■□□ 2.23
MSH6-202ENST00000411819 IQCA1LA6NCM1 817 aa28.99■■■□□ 2.23
MSH6-202ENST00000411819 CALD1Q05682 793 aaKnown RBP28.99■■■□□ 2.23
MSH6-202ENST00000411819 TRMT112Q9UI30 125 aaKnown RBP28.99■■■□□ 2.23
MSH6-202ENST00000411819 ZEB1P37275 1124 aaPredicted RBP28.98■■■□□ 2.23
MSH6-202ENST00000411819 SLC51AQ86UW1 340 aa28.98■■■□□ 2.23
MSH6-202ENST00000411819 JDP2Q8WYK2 163 aa28.98■■■□□ 2.23
MSH6-202ENST00000411819 IFT57Q9NWB7 429 aa28.98■■■□□ 2.23
MSH6-202ENST00000411819 HCLS1P14317 486 aaPredicted RBP28.97■■■□□ 2.23
MSH6-202ENST00000411819 GNAI1P63096 354 aa28.97■■■□□ 2.23
MSH6-202ENST00000411819 SLC10A5Q5PT55 438 aa28.97■■■□□ 2.23
MSH6-202ENST00000411819 ZNF428Q96B54 188 aa28.97■■■□□ 2.23
MSH6-202ENST00000411819 L3MBTL3Q96JM7 780 aaPredicted RBP28.97■■■□□ 2.23
MSH6-202ENST00000411819 TMX4Q9H1E5 349 aaPredicted RBP28.97■■■□□ 2.23
MSH6-202ENST00000411819 SH3TC1Q8TE82 1336 aa28.96■■■□□ 2.23
MSH6-202ENST00000411819 POTEIP0CG38 1075 aa28.96■■■□□ 2.23
MSH6-202ENST00000411819 POTEJP0CG39 1038 aa28.96■■■□□ 2.23
MSH6-202ENST00000411819 PLBD2Q8NHP8 589 aa28.96■■■□□ 2.23
MSH6-202ENST00000411819 KLRG1Q96E93 195 aa28.96■■■□□ 2.23
MSH6-202ENST00000411819 ABCC4O15439 1325 aa28.95■■■□□ 2.23
MSH6-202ENST00000411819 ZNF853P0CG23 659 aa28.95■■■□□ 2.22
MSH6-202ENST00000411819 GRIPAP1Q4V328 841 aa28.95■■■□□ 2.22
MSH6-202ENST00000411819 CHADLQ6NUI6 762 aa28.95■■■□□ 2.22
MSH6-202ENST00000411819 ANKRD13DQ6ZTN6 518 aa28.95■■■□□ 2.22
MSH6-202ENST00000411819 HYPKQ9NX55 129 aa28.95■■■□□ 2.22
MSH6-202ENST00000411819 COL4A5P29400 1685 aa28.93■■■□□ 2.22
MSH6-202ENST00000411819 FZD9O00144 591 aa28.93■■■□□ 2.22
MSH6-202ENST00000411819 ELL2O00472 640 aaPredicted RBP28.93■■■□□ 2.22
MSH6-202ENST00000411819 LARGE2Q8N3Y3 721 aa28.93■■■□□ 2.22
MSH6-202ENST00000411819 TAF1DQ9H5J8 278 aaPredicted RBP28.93■■■□□ 2.22
MSH6-202ENST00000411819 DDX60Q8IY21 1712 aaKnown RBP28.92■■■□□ 2.22
MSH6-202ENST00000411819 CCDC184Q52MB2 194 aa28.92■■■□□ 2.22
MSH6-202ENST00000411819 HACL1Q9UJ83 578 aa28.92■■■□□ 2.22
MSH6-202ENST00000411819 EIF6P56537 245 aaKnown RBP28.91■■■□□ 2.22
MSH6-202ENST00000411819 EAPPQ56P03 285 aaPredicted RBP28.91■■■□□ 2.22
MSH6-202ENST00000411819 ATP6V0A2Q9Y487 856 aa28.91■■■□□ 2.22
MSH6-202ENST00000411819 ATP5J2-PTCD1G3V325 749 aa28.9■■■□□ 2.22
MSH6-202ENST00000411819 DDX46Q7L014 1031 aaKnown RBP28.9■■■□□ 2.22
MSH6-202ENST00000411819 GOLGA2Q08379 1002 aa28.89■■■□□ 2.22
MSH6-202ENST00000411819 LDHDQ86WU2 507 aa28.89■■■□□ 2.22
MSH6-202ENST00000411819 GPC2Q8N158 579 aa28.89■■■□□ 2.22
MSH6-202ENST00000411819 GJA3Q9Y6H8 435 aa28.89■■■□□ 2.22
MSH6-202ENST00000411819 TAF1P21675 1872 aa28.89■■■□□ 2.21
MSH6-202ENST00000411819 PPIP5K2O43314 1243 aa28.88■■■□□ 2.21
MSH6-202ENST00000411819 ISCA1Q9BUE6 129 aa28.88■■■□□ 2.21
MSH6-202ENST00000411819 EPHX2P34913 555 aa28.87■■■□□ 2.21
MSH6-202ENST00000411819 RIC3Q7Z5B4 369 aa28.87■■■□□ 2.21
MSH6-202ENST00000411819 NIM1KQ8IY84 436 aa28.87■■■□□ 2.21
MSH6-202ENST00000411819 FAM89AQ96GI7 184 aa28.87■■■□□ 2.21
MSH6-202ENST00000411819 BBOX1O75936 387 aa28.86■■■□□ 2.21
MSH6-202ENST00000411819 GRAPQ13588 217 aa28.86■■■□□ 2.21
MSH6-202ENST00000411819 AOC3Q16853 763 aa28.86■■■□□ 2.21
MSH6-202ENST00000411819 RTL5Q5HYW3 569 aaPredicted RBP28.86■■■□□ 2.21
MSH6-202ENST00000411819 GRAPLQ8TC17 118 aaPredicted RBP28.86■■■□□ 2.21
MSH6-202ENST00000411819 PHAXQ9H814 394 aaKnown RBP28.86■■■□□ 2.21
MSH6-202ENST00000411819 CLEC11AQ9Y240 323 aa28.86■■■□□ 2.21
MSH6-202ENST00000411819 DPP8Q6V1X1 898 aaPredicted RBP28.85■■■□□ 2.21
MSH6-202ENST00000411819 C8orf58Q8NAV2 365 aa28.85■■■□□ 2.21
MSH6-202ENST00000411819 SP8Q8IXZ3 490 aa28.84■■■□□ 2.21
MSH6-202ENST00000411819 JMYQ8N9B5 988 aa28.84■■■□□ 2.21
MSH6-202ENST00000411819 SUPT20HQ8NEM7 779 aa28.84■■■□□ 2.21
MSH6-202ENST00000411819 ADAMTSL1Q8N6G6 1762 aa28.83■■■□□ 2.21
MSH6-202ENST00000411819 MRS2Q9HD23 443 aa28.83■■■□□ 2.21
MSH6-202ENST00000411819 ZNF316A6NFI3 1004 aaPredicted RBP28.82■■■□□ 2.2
MSH6-202ENST00000411819 ANP32CO43423 234 aa28.82■■■□□ 2.2
MSH6-202ENST00000411819 LMOD1P29536 600 aaPredicted RBP28.82■■■□□ 2.2
MSH6-202ENST00000411819 PNMA8AQ86V59 439 aaPredicted RBP28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms