RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 NEUROD6Q96NK8 337 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 RAB3IPQ96QF0 476 aaPredicted RBP14.73□□□□□ -0.05
COL6A3-206ENST00000409809 VCX3AQ9NNX9 186 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 ATP2A2P16615 1042 aaKnown RBP14.73□□□□□ -0.05
COL6A3-206ENST00000409809 MXRA7P84157 204 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 SLMAPQ14BN4 828 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 HSP90AA5PQ58FG0 334 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 TTC21AQ8NDW8 1320 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 RAD50Q92878 1312 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 SYNJ2O15056 1496 aa14.72□□□□□ -0.05
COL6A3-206ENST00000409809 STXBP4Q6ZWJ1 553 aa14.72□□□□□ -0.05
COL6A3-206ENST00000409809 MTRF1LQ9UGC7 380 aaKnown RBP14.72□□□□□ -0.05
COL6A3-206ENST00000409809 ARID4AP29374 1257 aaPredicted RBP14.72□□□□□ -0.05
COL6A3-206ENST00000409809 CAMK4Q16566 473 aa14.72□□□□□ -0.05
COL6A3-206ENST00000409809 ADAMTS8Q9UP79 889 aa14.72□□□□□ -0.05
COL6A3-206ENST00000409809 DNAJC8O75937 253 aaPredicted RBP14.72□□□□□ -0.05
COL6A3-206ENST00000409809 GRIN2BQ13224 1484 aa14.72□□□□□ -0.05
COL6A3-206ENST00000409809 TCP11L2Q8N4U5 519 aa14.72□□□□□ -0.05
COL6A3-206ENST00000409809 CNNM3Q8NE01 707 aa14.72□□□□□ -0.05
COL6A3-206ENST00000409809 C8orf76Q96K31 380 aa14.72□□□□□ -0.05
COL6A3-206ENST00000409809 UBAC1Q9BSL1 405 aa14.72□□□□□ -0.05
COL6A3-206ENST00000409809 NEBLO76041 1014 aa14.71□□□□□ -0.05
COL6A3-206ENST00000409809 RIC3Q7Z5B4 369 aa14.71□□□□□ -0.05
COL6A3-206ENST00000409809 GBP7Q8N8V2 638 aaPredicted RBP14.71□□□□□ -0.05
COL6A3-206ENST00000409809 TMEM266Q2M3C6 531 aa14.71□□□□□ -0.05
COL6A3-206ENST00000409809 RUFY4Q6ZNE9 571 aa14.71□□□□□ -0.05
COL6A3-206ENST00000409809 NOB1Q9ULX3 412 aaKnown RBP14.71□□□□□ -0.05
COL6A3-206ENST00000409809 TRIM35Q9UPQ4 493 aa14.71□□□□□ -0.05
COL6A3-206ENST00000409809 TNNC1P63316 161 aa14.71□□□□□ -0.05
COL6A3-206ENST00000409809 FAN1Q9Y2M0 1017 aa14.71□□□□□ -0.05
COL6A3-206ENST00000409809 TRMT1Q9NXH9 659 aaKnown RBP14.71□□□□□ -0.06
COL6A3-206ENST00000409809 ANKRD30BQ9BXX2 1392 aa14.71□□□□□ -0.06
COL6A3-206ENST00000409809 MAP7D1Q3KQU3 841 aa14.71□□□□□ -0.06
COL6A3-206ENST00000409809 INTS8Q75QN2 995 aaKnown RBP14.71□□□□□ -0.06
COL6A3-206ENST00000409809 ERCC3P19447 782 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.7□□□□□ -0.06
COL6A3-206ENST00000409809 FYB2Q5VWT5 728 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 MTUS1Q9ULD2 1270 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 TWISTNBQ3B726 338 aaPredicted RBP14.7□□□□□ -0.06
COL6A3-206ENST00000409809 RPAINQ86UA6 219 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 MED4Q9NPJ6 270 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 SF3B2Q13435 895 aaKnown RBP14.7□□□□□ -0.06
COL6A3-206ENST00000409809 CNGA4Q8IV77 575 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 SEC62Q99442 399 aaKnown RBP14.7□□□□□ -0.06
COL6A3-206ENST00000409809 NDUFAB1O14561 156 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 DBN1Q16643 649 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 GCKP35557 465 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 TAOK1Q7L7X3 1001 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 Q9H521 79 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 CTNNA2P26232 953 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 DMTNQ08495 405 aa14.7□□□□□ -0.06
COL6A3-206ENST00000409809 GOLGA5Q8TBA6 731 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 PLCB1Q9NQ66 1216 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 A0A087WZG4 1122 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 TRIM14Q14142 442 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 STRN4Q9NRL3 753 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 RAB3IL1Q8TBN0 382 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 GBP5Q96PP8 586 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 IMPACTQ9P2X3 320 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 UBASH3AP57075 661 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 USP37Q86T82 979 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 RPUSD2Q8IZ73 545 aaKnown RBP14.69□□□□□ -0.06
COL6A3-206ENST00000409809 RNF10Q8N5U6 811 aaKnown RBP14.69□□□□□ -0.06
COL6A3-206ENST00000409809 CCDC102BQ68D86 513 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 PIBF1Q8WXW3 757 aa14.69□□□□□ -0.06
COL6A3-206ENST00000409809 NEDD9Q14511 834 aa14.68□□□□□ -0.06
COL6A3-206ENST00000409809 EIF2S2P20042 333 aaKnown RBP14.68□□□□□ -0.06
COL6A3-206ENST00000409809 PPP2R1AP30153 589 aa14.68□□□□□ -0.06
COL6A3-206ENST00000409809 KIF5AQ12840 1032 aa14.68□□□□□ -0.06
COL6A3-206ENST00000409809 DNAI1Q9UI46 699 aa14.68□□□□□ -0.06
COL6A3-206ENST00000409809 IBSPP21815 317 aaPredicted RBP14.68□□□□□ -0.06
COL6A3-206ENST00000409809 TMEM132AQ24JP5 1023 aa14.68□□□□□ -0.06
COL6A3-206ENST00000409809 NKIRAS1Q9NYS0 192 aa14.68□□□□□ -0.06
COL6A3-206ENST00000409809 GOLGA6CA6NDK9 693 aa14.68□□□□□ -0.06
COL6A3-206ENST00000409809 GOLGA6DP0CG33 693 aa14.68□□□□□ -0.06
COL6A3-206ENST00000409809 GOLGA6AQ9NYA3 693 aa14.68□□□□□ -0.06
COL6A3-206ENST00000409809 TNIP1Q15025 636 aa14.68□□□□□ -0.06
COL6A3-206ENST00000409809 TDRD12Q587J7 1177 aaKnown RBP14.68□□□□□ -0.06
COL6A3-206ENST00000409809 TSPYL2Q9H2G4 693 aaPredicted RBP14.68□□□□□ -0.06
COL6A3-206ENST00000409809 PPFIA4O75335 1185 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 ZKSCAN8Q15776 578 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-206ENST00000409809 CCDC96Q2M329 555 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.67□□□□□ -0.06
COL6A3-206ENST00000409809 KIF1BPQ96EK5 621 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 CCDC14Q49A88 953 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 FSIP1Q8NA03 581 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 IQCDQ96DY2 449 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 TBC1D5Q92609 795 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 PSMD1Q99460 953 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 TIAM1Q13009 1591 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 GMNNO75496 209 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 SYT1P21579 422 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 TTC39AQ5SRH9 613 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 CCDC65Q8IXS2 484 aa14.67□□□□□ -0.06
COL6A3-206ENST00000409809 RAD21O60216 631 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 ATP2B1P20020 1258 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 CCDC62Q6P9F0 684 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 MIER3Q7Z3K6 550 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 SRGAP3O43295 1099 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 PRC1O43663 620 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms