RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 RIC3Q7Z5B4 369 aa15.43■□□□□ 0.06
PTPRN-202ENST00000409251 ZNF496Q96IT1 587 aaPredicted RBP15.43■□□□□ 0.06
PTPRN-202ENST00000409251 NRBP1Q9UHY1 535 aa15.43■□□□□ 0.06
PTPRN-202ENST00000409251 CCDC112Q8NEF3 446 aa15.43■□□□□ 0.06
PTPRN-202ENST00000409251 LETM1O95202 739 aaPredicted RBP15.42■□□□□ 0.06
PTPRN-202ENST00000409251 GTPBP4Q9BZE4 634 aaKnown RBP15.42■□□□□ 0.06
PTPRN-202ENST00000409251 CCDC183Q5T5S1 534 aa15.42■□□□□ 0.06
PTPRN-202ENST00000409251 ANKRD44Q8N8A2 993 aa15.42■□□□□ 0.06
PTPRN-202ENST00000409251 CYP27B1O15528 508 aa15.42■□□□□ 0.06
PTPRN-202ENST00000409251 SPG7Q9UQ90 795 aa15.42■□□□□ 0.06
PTPRN-202ENST00000409251 TNNT3P45378 269 aaPredicted RBP15.41■□□□□ 0.06
PTPRN-202ENST00000409251 USP44Q9H0E7 712 aa15.41■□□□□ 0.06
PTPRN-202ENST00000409251 PXDNQ92626 1479 aa15.41■□□□□ 0.06
PTPRN-202ENST00000409251 CYP2E1P05181 493 aaPredicted RBP15.41■□□□□ 0.06
PTPRN-202ENST00000409251 CCT4P50991 539 aaKnown RBP15.41■□□□□ 0.06
PTPRN-202ENST00000409251 STK3Q13188 491 aa15.41■□□□□ 0.06
PTPRN-202ENST00000409251 AMOTQ4VCS5 1084 aa15.41■□□□□ 0.06
PTPRN-202ENST00000409251 PPP1R42Q7Z4L9 355 aa15.41■□□□□ 0.06
PTPRN-202ENST00000409251 ST7Q9NRC1 585 aa15.41■□□□□ 0.06
PTPRN-202ENST00000409251 XRN1Q8IZH2 1706 aaKnown RBP15.41■□□□□ 0.06
PTPRN-202ENST00000409251 RTL1A6NKG5 1358 aa15.41■□□□□ 0.06
PTPRN-202ENST00000409251 WDR33Q9C0J8 1336 aaKnown RBP15.41■□□□□ 0.06
PTPRN-202ENST00000409251 IBTKQ9P2D0 1353 aaPredicted RBP15.4■□□□□ 0.06
PTPRN-202ENST00000409251 PTPRCP08575 1304 aa15.4■□□□□ 0.06
PTPRN-202ENST00000409251 KDM4AO75164 1064 aa15.4■□□□□ 0.06
PTPRN-202ENST00000409251 NECAB1Q8N987 351 aa15.4■□□□□ 0.06
PTPRN-202ENST00000409251 DNAAF4Q8WXU2 420 aa15.4■□□□□ 0.06
PTPRN-202ENST00000409251 A0A087WWV3 80 aa15.4■□□□□ 0.06
PTPRN-202ENST00000409251 HMMRO75330 724 aa15.4■□□□□ 0.06
PTPRN-202ENST00000409251 CWC27Q6UX04 472 aaKnown RBP15.4■□□□□ 0.06
PTPRN-202ENST00000409251 COPS6Q7L5N1 327 aa15.4■□□□□ 0.06
PTPRN-202ENST00000409251 BICD2Q8TD16 824 aa15.4■□□□□ 0.06
PTPRN-202ENST00000409251 BRD1O95696 1058 aa15.39■□□□□ 0.05
PTPRN-202ENST00000409251 DCTPP1Q9H773 170 aa15.39■□□□□ 0.05
PTPRN-202ENST00000409251 BTG4Q9NY30 223 aa15.39■□□□□ 0.05
PTPRN-202ENST00000409251 POLR3GO15318 223 aaPredicted RBP15.39■□□□□ 0.05
PTPRN-202ENST00000409251 GIGYF1O75420 1035 aaPredicted RBP15.39■□□□□ 0.05
PTPRN-202ENST00000409251 KIF20AO95235 890 aa15.39■□□□□ 0.05
PTPRN-202ENST00000409251 ZNF790Q6PG37 636 aa15.38■□□□□ 0.05
PTPRN-202ENST00000409251 XAGE3Q8WTP9 111 aa15.38■□□□□ 0.05
PTPRN-202ENST00000409251 ADAMTSL3P82987 1691 aa15.38■□□□□ 0.05
PTPRN-202ENST00000409251 PDE1AP54750 535 aa15.38■□□□□ 0.05
PTPRN-202ENST00000409251 SKIDA1Q1XH10 827 aa15.38■□□□□ 0.05
PTPRN-202ENST00000409251 UTP14CQ5TAP6 766 aaKnown RBP15.38■□□□□ 0.05
PTPRN-202ENST00000409251 FMNL2Q96PY5 1086 aa15.38■□□□□ 0.05
PTPRN-202ENST00000409251 MYD88Q99836 296 aa15.38■□□□□ 0.05
PTPRN-202ENST00000409251 PHKG2P15735 406 aa15.37■□□□□ 0.05
PTPRN-202ENST00000409251 RPAP2Q8IXW5 612 aaPredicted RBP15.37■□□□□ 0.05
PTPRN-202ENST00000409251 IFNL2Q8IZJ0 200 aa15.37■□□□□ 0.05
PTPRN-202ENST00000409251 GTF3C6Q969F1 213 aa15.37■□□□□ 0.05
PTPRN-202ENST00000409251 TOPAZ1Q8N9V7 1692 aa15.37■□□□□ 0.05
PTPRN-202ENST00000409251 MX1P20591 662 aa15.37■□□□□ 0.05
PTPRN-202ENST00000409251 BRPF1P55201 1214 aaPredicted RBP15.37■□□□□ 0.05
PTPRN-202ENST00000409251 AEBP2Q6ZN18 517 aaPredicted RBP15.37■□□□□ 0.05
PTPRN-202ENST00000409251 ZBTB3Q9H5J0 574 aa15.37■□□□□ 0.05
PTPRN-202ENST00000409251 NRKQ7Z2Y5 1582 aa15.37■□□□□ 0.05
PTPRN-202ENST00000409251 SPATA31A3Q5VYP0 1347 aa15.37■□□□□ 0.05
PTPRN-202ENST00000409251 CHD2O14647 1828 aaKnown RBP15.37■□□□□ 0.05
PTPRN-202ENST00000409251 FAM184AQ8NB25 1140 aa15.37■□□□□ 0.05
PTPRN-202ENST00000409251 HTATSF1O43719 755 aaKnown RBP15.36■□□□□ 0.05
PTPRN-202ENST00000409251 GTF2F1P35269 517 aaKnown RBP eCLIP15.36■□□□□ 0.05
PTPRN-202ENST00000409251 UNC5CLQ8IV45 518 aa15.36■□□□□ 0.05
PTPRN-202ENST00000409251 TMX1Q9H3N1 280 aa15.36■□□□□ 0.05
PTPRN-202ENST00000409251 VIRMAQ69YN4 1812 aaKnown RBP15.36■□□□□ 0.05
PTPRN-202ENST00000409251 A1BGP04217 495 aa15.36■□□□□ 0.05
PTPRN-202ENST00000409251 GNAI3P08754 354 aa15.36■□□□□ 0.05
PTPRN-202ENST00000409251 CCDC192P0DO97 292 aa15.36■□□□□ 0.05
PTPRN-202ENST00000409251 FAM177A1Q8N128 213 aaPredicted RBP15.36■□□□□ 0.05
PTPRN-202ENST00000409251 DBF4Q9UBU7 674 aaPredicted RBP15.36■□□□□ 0.05
PTPRN-202ENST00000409251 MST1RQ04912 1400 aa15.36■□□□□ 0.05
PTPRN-202ENST00000409251 AP5Z1O43299 807 aa15.36■□□□□ 0.05
PTPRN-202ENST00000409251 STX6O43752 255 aa15.36■□□□□ 0.05
PTPRN-202ENST00000409251 CASTP20810 708 aaKnown RBP15.36■□□□□ 0.05
PTPRN-202ENST00000409251 KCNF1Q9H3M0 494 aa15.36■□□□□ 0.05
PTPRN-202ENST00000409251 FMN2Q9NZ56 1722 aa15.35■□□□□ 0.05
PTPRN-202ENST00000409251 SYT1P21579 422 aa15.35■□□□□ 0.05
PTPRN-202ENST00000409251 ERCC4Q92889 916 aaPredicted RBP15.35■□□□□ 0.05
PTPRN-202ENST00000409251 ESYT1Q9BSJ8 1104 aa15.35■□□□□ 0.05
PTPRN-202ENST00000409251 RGS12O14924 1447 aa15.35■□□□□ 0.05
PTPRN-202ENST00000409251 LRRCC1Q9C099 1032 aa15.35■□□□□ 0.05
PTPRN-202ENST00000409251 ARID5BQ14865 1188 aa15.34■□□□□ 0.05
PTPRN-202ENST00000409251 CLEC17AQ6ZS10 378 aa15.34■□□□□ 0.05
PTPRN-202ENST00000409251 SLC52A2Q9HAB3 445 aa15.34■□□□□ 0.05
PTPRN-202ENST00000409251 CCAR2Q8N163 923 aaKnown RBP15.34■□□□□ 0.05
PTPRN-202ENST00000409251 ZCRB1Q8TBF4 217 aaKnown RBP15.34■□□□□ 0.05
PTPRN-202ENST00000409251 TNMDQ9H2S6 317 aa15.34■□□□□ 0.05
PTPRN-202ENST00000409251 NDUFB9Q9Y6M9 179 aa15.34■□□□□ 0.05
PTPRN-202ENST00000409251 NCBP1Q09161 790 aaKnown RBP15.34■□□□□ 0.05
PTPRN-202ENST00000409251 ANO6Q4KMQ2 910 aa15.34■□□□□ 0.05
PTPRN-202ENST00000409251 KIAA1524Q8TCG1 905 aa15.34■□□□□ 0.05
PTPRN-202ENST00000409251 ACSBG1Q96GR2 724 aa15.34■□□□□ 0.05
PTPRN-202ENST00000409251 GOLGA6L19H0YKK7 550 aa15.33■□□□□ 0.04
PTPRN-202ENST00000409251 TRIM34Q9BYJ4 488 aa15.33■□□□□ 0.04
PTPRN-202ENST00000409251 BECN2A8MW95 431 aa15.33■□□□□ 0.04
PTPRN-202ENST00000409251 GJB2P29033 226 aa15.33■□□□□ 0.04
PTPRN-202ENST00000409251 CCDC8Q9H0W5 538 aaPredicted RBP15.33■□□□□ 0.04
PTPRN-202ENST00000409251 DNAJC25Q9H1X3 360 aa15.33■□□□□ 0.04
PTPRN-202ENST00000409251 ELF2Q15723 593 aa15.32■□□□□ 0.04
PTPRN-202ENST00000409251 CLIP2Q9UDT6 1046 aa15.32■□□□□ 0.04
PTPRN-202ENST00000409251 RGPD2P0DJD1 1756 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms