RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 C10orf71Q711Q0 1435 aa37.24■■■■□ 3.55
USP42-202ENST00000404008 NEURL1BA8MQ27 555 aa37.24■■■■□ 3.55
USP42-202ENST00000404008 TRIM27P14373 513 aa37.24■■■■□ 3.55
USP42-202ENST00000404008 TPTE2Q6XPS3 522 aa37.24■■■■□ 3.55
USP42-202ENST00000404008 ANKRD31Q8N7Z5 1873 aa37.23■■■■□ 3.55
USP42-202ENST00000404008 UTP14AQ9BVJ6 771 aaKnown RBP37.23■■■■□ 3.55
USP42-202ENST00000404008 CWC25Q9NXE8 425 aaPredicted RBP37.23■■■■□ 3.55
USP42-202ENST00000404008 ABCC4O15439 1325 aa37.21■■■■□ 3.55
USP42-202ENST00000404008 RNF123Q5XPI4 1314 aa37.21■■■■□ 3.55
USP42-202ENST00000404008 PPP1R1BQ9UD71 204 aaPredicted RBP37.2■■■■□ 3.55
USP42-202ENST00000404008 TNNQ9UQP3 1299 aa37.2■■■■□ 3.55
USP42-202ENST00000404008 NPHP1O15259 732 aa37.19■■■■□ 3.54
USP42-202ENST00000404008 NUTM1Q86Y26 1132 aa37.19■■■■□ 3.54
USP42-202ENST00000404008 SRCIN1Q9C0H9 1055 aa37.19■■■■□ 3.54
USP42-202ENST00000404008 TRMT112Q9UI30 125 aaKnown RBP37.19■■■■□ 3.54
USP42-202ENST00000404008 LAMB2P55268 1798 aa37.19■■■■□ 3.54
USP42-202ENST00000404008 DDX60Q8IY21 1712 aaKnown RBP37.18■■■■□ 3.54
USP42-202ENST00000404008 ST5P78524 1137 aa37.17■■■■□ 3.54
USP42-202ENST00000404008 GCKRQ14397 625 aa37.17■■■■□ 3.54
USP42-202ENST00000404008 ERFEQ4G0M1 354 aa37.17■■■■□ 3.54
USP42-202ENST00000404008 CCDC24Q8N4L8 307 aa37.17■■■■□ 3.54
USP42-202ENST00000404008 ALDH1L1O75891 902 aa37.17■■■■□ 3.54
USP42-202ENST00000404008 GTF2E1P29083 439 aaPredicted RBP37.17■■■■□ 3.54
USP42-202ENST00000404008 TNRC6CQ9HCJ0 1690 aaKnown RBP37.16■■■■□ 3.54
USP42-202ENST00000404008 ABCC12Q96J65 1359 aa37.16■■■■□ 3.54
USP42-202ENST00000404008 KIAA1551Q9HCM1 1747 aa37.16■■■■□ 3.54
USP42-202ENST00000404008 ZBTB38Q8NAP3 1195 aaPredicted RBP37.16■■■■□ 3.54
USP42-202ENST00000404008 SH3TC1Q8TE82 1336 aa37.15■■■■□ 3.54
USP42-202ENST00000404008 CCT4P50991 539 aaKnown RBP37.15■■■■□ 3.54
USP42-202ENST00000404008 CLUAP1Q96AJ1 413 aa37.15■■■■□ 3.54
USP42-202ENST00000404008 FAM89AQ96GI7 184 aa37.15■■■■□ 3.54
USP42-202ENST00000404008 CD2APQ9Y5K6 639 aa37.14■■■■□ 3.54
USP42-202ENST00000404008 RIC1Q4ADV7 1423 aa37.14■■■■□ 3.54
USP42-202ENST00000404008 PCCAP05165 728 aaPredicted RBP37.13■■■■□ 3.53
USP42-202ENST00000404008 SYNE4Q8N205 404 aa37.13■■■■□ 3.53
USP42-202ENST00000404008 PLIN1O60240 522 aa37.12■■■■□ 3.53
USP42-202ENST00000404008 INTS3Q68E01 1043 aaKnown RBP37.12■■■■□ 3.53
USP42-202ENST00000404008 BRIP1Q9BX63 1249 aa37.12■■■■□ 3.53
USP42-202ENST00000404008 FHDC1Q9C0D6 1143 aaPredicted RBP37.12■■■■□ 3.53
USP42-202ENST00000404008 DZIP1LQ8IYY4 767 aaKnown RBP37.11■■■■□ 3.53
USP42-202ENST00000404008 KLHL34Q8N239 644 aa37.11■■■■□ 3.53
USP42-202ENST00000404008 COL11A2P13942 1736 aaPredicted RBP37.11■■■■□ 3.53
USP42-202ENST00000404008 RTL5Q5HYW3 569 aaPredicted RBP37.1■■■■□ 3.53
USP42-202ENST00000404008 SLC10A5Q5PT55 438 aa37.1■■■■□ 3.53
USP42-202ENST00000404008 FTSJ3Q8IY81 847 aaKnown RBP37.1■■■■□ 3.53
USP42-202ENST00000404008 GOLGA6L2Q8N9W4 650 aaPredicted RBP37.1■■■■□ 3.53
USP42-202ENST00000404008 H7C1W4 665 aa37.09■■■■□ 3.53
USP42-202ENST00000404008 DLEC1Q9Y238 1755 aa37.09■■■■□ 3.53
USP42-202ENST00000404008 JARID2Q92833 1246 aaPredicted RBP37.08■■■■□ 3.53
USP42-202ENST00000404008 CDHR2Q9BYE9 1310 aa37.07■■■■□ 3.53
USP42-202ENST00000404008 GRM8O00222 908 aa37.07■■■■□ 3.53
USP42-202ENST00000404008 RLBP1P12271 317 aa37.07■■■■□ 3.53
USP42-202ENST00000404008 UBE3BQ7Z3V4 1068 aa37.07■■■■□ 3.53
USP42-202ENST00000404008 MYH3P11055 1940 aa37.07■■■■□ 3.52
USP42-202ENST00000404008 TMEM57Q8N5G2 664 aa37.06■■■■□ 3.52
USP42-202ENST00000404008 IRS4O14654 1257 aaPredicted RBP37.05■■■■□ 3.52
USP42-202ENST00000404008 MS4A1P11836 297 aa37.05■■■■□ 3.52
USP42-202ENST00000404008 HCLS1P14317 486 aaPredicted RBP37.05■■■■□ 3.52
USP42-202ENST00000404008 PDE6BP35913 854 aa37.05■■■■□ 3.52
USP42-202ENST00000404008 CASP7P55210 303 aa37.05■■■■□ 3.52
USP42-202ENST00000404008 C9orf78Q9NZ63 289 aaPredicted RBP37.05■■■■□ 3.52
USP42-202ENST00000404008 RRP1P56182 461 aaKnown RBP37.04■■■■□ 3.52
USP42-202ENST00000404008 UTYO14607 1347 aa37.04■■■■□ 3.52
USP42-202ENST00000404008 KLRG2A4D1S0 409 aaPredicted RBP37.04■■■■□ 3.52
USP42-202ENST00000404008 TGFB2P61812 414 aa37.04■■■■□ 3.52
USP42-202ENST00000404008 PANK1Q8TE04 598 aa37.04■■■■□ 3.52
USP42-202ENST00000404008 SYT17Q9BSW7 474 aa37.04■■■■□ 3.52
USP42-202ENST00000404008 NLGN2Q8NFZ4 835 aa37.03■■■■□ 3.52
USP42-202ENST00000404008 USP44Q9H0E7 712 aa37.03■■■■□ 3.52
USP42-202ENST00000404008 BRCA1P38398 1863 aaKnown RBP37.02■■■■□ 3.52
USP42-202ENST00000404008 NBPF7P0C2Y1 421 aaPredicted RBP37.01■■■■□ 3.51
USP42-202ENST00000404008 HSP90B1P14625 803 aaKnown RBP37.01■■■■□ 3.51
USP42-202ENST00000404008 C3orf67Q6ZVT6 689 aa37.01■■■■□ 3.51
USP42-202ENST00000404008 PDE3AQ14432 1141 aa37■■■■□ 3.51
USP42-202ENST00000404008 NLRP3Q96P20 1036 aa37■■■■□ 3.51
USP42-202ENST00000404008 PDZRN3Q9UPQ7 1066 aa37■■■■□ 3.51
USP42-202ENST00000404008 CRY2Q49AN0 593 aa36.99■■■■□ 3.51
USP42-202ENST00000404008 C2CD5Q86YS7 1000 aa36.99■■■■□ 3.51
USP42-202ENST00000404008 CHRNA5P30532 468 aa36.98■■■■□ 3.51
USP42-202ENST00000404008 C20orf194Q5TEA3 1177 aa36.98■■■■□ 3.51
USP42-202ENST00000404008 A0A0G2JLW4 131 aa36.97■■■■□ 3.51
USP42-202ENST00000404008 H0YIN7 160 aa36.97■■■■□ 3.51
USP42-202ENST00000404008 PDE8AO60658 829 aa36.97■■■■□ 3.51
USP42-202ENST00000404008 DPEP1P16444 411 aa36.97■■■■□ 3.51
USP42-202ENST00000404008 GOLGB1Q14789 3259 aaKnown RBP36.96■■■■□ 3.51
USP42-202ENST00000404008 SRGNP10124 158 aa36.96■■■■□ 3.51
USP42-202ENST00000404008 ITPRIPQ8IWB1 547 aa36.96■■■■□ 3.51
USP42-202ENST00000404008 PLA2G12BQ9BX93 195 aa36.96■■■■□ 3.51
USP42-202ENST00000404008 KCNA3P22001 575 aa36.95■■■■□ 3.51
USP42-202ENST00000404008 CACNA1SQ13698 1873 aa36.94■■■■□ 3.5
USP42-202ENST00000404008 MEIS3Q99687 375 aa36.94■■■■□ 3.5
USP42-202ENST00000404008 SUPT16HQ9Y5B9 1047 aaKnown RBP36.93■■■■□ 3.5
USP42-202ENST00000404008 SF3B3Q15393 1217 aaKnown RBP36.92■■■■□ 3.5
USP42-202ENST00000404008 CTSWP56202 376 aa36.91■■■■□ 3.5
USP42-202ENST00000404008 MVPQ14764 893 aaKnown RBP36.91■■■■□ 3.5
USP42-202ENST00000404008 SUCLG2Q96I99 432 aa36.91■■■■□ 3.5
USP42-202ENST00000404008 UBTFL1P0CB47 393 aaPredicted RBP36.91■■■■□ 3.5
USP42-202ENST00000404008 NPR1P16066 1061 aa36.91■■■■□ 3.5
USP42-202ENST00000404008 MASTLQ96GX5 879 aa36.91■■■■□ 3.5
USP42-202ENST00000404008 KAZALD1Q96I82 304 aa36.91■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms