RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ZNF521Q96K83 1311 aa12.07□□□□□ -0.48
VPS53-203ENST00000401468 NUP98P52948 1817 aa12.07□□□□□ -0.48
VPS53-203ENST00000401468 LAMB4A4D0S4 1761 aa12.06□□□□□ -0.48
VPS53-203ENST00000401468 CANXP27824 592 aaKnown RBP12.06□□□□□ -0.48
VPS53-203ENST00000401468 DDR1Q08345 913 aa12.06□□□□□ -0.48
VPS53-203ENST00000401468 DCTN1Q14203 1278 aa12.06□□□□□ -0.48
VPS53-203ENST00000401468 COL13A1Q5TAT6 717 aaPredicted RBP12.06□□□□□ -0.48
VPS53-203ENST00000401468 USPL1Q5W0Q7 1092 aa12.06□□□□□ -0.48
VPS53-203ENST00000401468 IL17REQ8NFR9 667 aa12.06□□□□□ -0.48
VPS53-203ENST00000401468 ZBTB1Q9Y2K1 713 aa12.06□□□□□ -0.48
VPS53-203ENST00000401468 NRXN2Q9P2S2 1712 aa12.06□□□□□ -0.48
VPS53-203ENST00000401468 C10orf71Q711Q0 1435 aa12.05□□□□□ -0.48
VPS53-203ENST00000401468 ATP10DQ9P241 1426 aa12.05□□□□□ -0.48
VPS53-203ENST00000401468 DPEP1P16444 411 aa12.05□□□□□ -0.48
VPS53-203ENST00000401468 RIPK4P57078 832 aa12.05□□□□□ -0.48
VPS53-203ENST00000401468 LMOD3Q0VAK6 560 aa12.05□□□□□ -0.48
VPS53-203ENST00000401468 MCM10Q7L590 875 aa12.05□□□□□ -0.48
VPS53-203ENST00000401468 CCDC87Q9NVE4 849 aa12.05□□□□□ -0.48
VPS53-203ENST00000401468 PRAMEF22A3QJZ6 481 aa12.04□□□□□ -0.48
VPS53-203ENST00000401468 CYP19A1P11511 503 aaPredicted RBP12.04□□□□□ -0.48
VPS53-203ENST00000401468 RC3H1Q5TC82 1133 aaKnown RBP12.04□□□□□ -0.48
VPS53-203ENST00000401468 BICDL1Q6ZP65 573 aa12.04□□□□□ -0.48
VPS53-203ENST00000401468 CCDC24Q8N4L8 307 aa12.04□□□□□ -0.48
VPS53-203ENST00000401468 KHSRPQ92945 711 aaKnown RBP eCLIP12.04□□□□□ -0.48
VPS53-203ENST00000401468 BCS1LQ9Y276 419 aa12.04□□□□□ -0.48
VPS53-203ENST00000401468 USP42Q9H9J4 1324 aaKnown RBP12.04□□□□□ -0.48
VPS53-203ENST00000401468 COL15A1P39059 1388 aa12.04□□□□□ -0.48
VPS53-203ENST00000401468 TIAM2Q8IVF5 1701 aa12.03□□□□□ -0.48
VPS53-203ENST00000401468 CHRNA5P30532 468 aa12.03□□□□□ -0.48
VPS53-203ENST00000401468 WWC1Q8IX03 1113 aa12.03□□□□□ -0.48
VPS53-203ENST00000401468 ZNF496Q96IT1 587 aaPredicted RBP12.03□□□□□ -0.48
VPS53-203ENST00000401468 PARP3Q9Y6F1 533 aa12.03□□□□□ -0.48
VPS53-203ENST00000401468 SOS1Q07889 1333 aaPredicted RBP12.03□□□□□ -0.48
VPS53-203ENST00000401468 TEFQ10587 303 aa12.02□□□□□ -0.49
VPS53-203ENST00000401468 BABAM1Q9NWV8 329 aa12.02□□□□□ -0.49
VPS53-203ENST00000401468 MIS18AQ9NYP9 233 aa12.02□□□□□ -0.49
VPS53-203ENST00000401468 RRP7AQ9Y3A4 280 aaKnown RBP12.02□□□□□ -0.49
VPS53-203ENST00000401468 IL16Q14005 1332 aa12.02□□□□□ -0.49
VPS53-203ENST00000401468 CARMIL3Q8ND23 1372 aa12.02□□□□□ -0.49
VPS53-203ENST00000401468 SLX4Q8IY92 1834 aa12.02□□□□□ -0.49
VPS53-203ENST00000401468 GRIN3BO60391 1043 aa12.01□□□□□ -0.49
VPS53-203ENST00000401468 ZNF853P0CG23 659 aa12.01□□□□□ -0.49
VPS53-203ENST00000401468 WDR63Q8IWG1 891 aa12.01□□□□□ -0.49
VPS53-203ENST00000401468 TTC5Q8N0Z6 440 aa12.01□□□□□ -0.49
VPS53-203ENST00000401468 NLGN1Q8N2Q7 840 aa12.01□□□□□ -0.49
VPS53-203ENST00000401468 RTF1Q92541 710 aaKnown RBP12.01□□□□□ -0.49
VPS53-203ENST00000401468 THUMPD2Q9BTF0 503 aaKnown RBP12.01□□□□□ -0.49
VPS53-203ENST00000401468 DICER1Q9UPY3 1922 aaKnown RBP12.01□□□□□ -0.49
VPS53-203ENST00000401468 CACNA1FO60840 1977 aa12□□□□□ -0.49
VPS53-203ENST00000401468 ZPR1O75312 459 aa12□□□□□ -0.49
VPS53-203ENST00000401468 A1BGP04217 495 aa12□□□□□ -0.49
VPS53-203ENST00000401468 ARHGAP27Q6ZUM4 889 aa12□□□□□ -0.49
VPS53-203ENST00000401468 BCL2L12Q9HB09 334 aa12□□□□□ -0.49
VPS53-203ENST00000401468 TBC1D2BQ9UPU7 963 aa12□□□□□ -0.49
VPS53-203ENST00000401468 TAF1P21675 1872 aa12□□□□□ -0.49
VPS53-203ENST00000401468 POLRMTO00411 1230 aaKnown RBP11.99□□□□□ -0.49
VPS53-203ENST00000401468 KCNA3P22001 575 aa11.99□□□□□ -0.49
VPS53-203ENST00000401468 CALD1Q05682 793 aaKnown RBP11.99□□□□□ -0.49
VPS53-203ENST00000401468 NFIXQ14938 502 aa11.99□□□□□ -0.49
VPS53-203ENST00000401468 ZNF790Q6PG37 636 aa11.99□□□□□ -0.49
VPS53-203ENST00000401468 TNS4Q8IZW8 715 aa11.99□□□□□ -0.49
VPS53-203ENST00000401468 DNAJC5GQ8N7S2 189 aa11.99□□□□□ -0.49
VPS53-203ENST00000401468 ZBED9Q6R2W3 1325 aa11.99□□□□□ -0.49
VPS53-203ENST00000401468 HEG1Q9ULI3 1381 aa11.99□□□□□ -0.49
VPS53-203ENST00000401468 FER1L6Q2WGJ9 1857 aa11.98□□□□□ -0.49
VPS53-203ENST00000401468 ARFGEF2Q9Y6D5 1785 aa11.98□□□□□ -0.49
VPS53-203ENST00000401468 BTBD11A6QL63 1104 aa11.98□□□□□ -0.49
VPS53-203ENST00000401468 CHL1O00533 1208 aa11.98□□□□□ -0.49
VPS53-203ENST00000401468 TAF7Q15545 349 aaPredicted RBP11.98□□□□□ -0.49
VPS53-203ENST00000401468 NEUROD2Q15784 382 aa11.98□□□□□ -0.49
VPS53-203ENST00000401468 CFAP44Q96MT7 982 aa11.98□□□□□ -0.49
VPS53-203ENST00000401468 IFT57Q9NWB7 429 aa11.98□□□□□ -0.49
VPS53-203ENST00000401468 PCNTO95613 3336 aa11.98□□□□□ -0.49
VPS53-203ENST00000401468 TNRC6CQ9HCJ0 1690 aaKnown RBP11.97□□□□□ -0.49
VPS53-203ENST00000401468 ADCY9O60503 1353 aa11.97□□□□□ -0.49
VPS53-203ENST00000401468 NUDT7P0C024 238 aa11.97□□□□□ -0.49
VPS53-203ENST00000401468 TBC1D9BQ66K14 1250 aa11.97□□□□□ -0.49
VPS53-203ENST00000401468 TRMT2AQ8IZ69 625 aaKnown RBP11.97□□□□□ -0.49
VPS53-203ENST00000401468 ZNF687Q8N1G0 1237 aa11.97□□□□□ -0.49
VPS53-203ENST00000401468 USP16Q9Y5T5 823 aa11.97□□□□□ -0.49
VPS53-203ENST00000401468 HMGB2P26583 209 aaKnown RBP11.96□□□□□ -0.49
VPS53-203ENST00000401468 TM4SF1P30408 202 aa11.96□□□□□ -0.49
VPS53-203ENST00000401468 HNRNPUQ00839 825 aaKnown RBP eCLIP11.96□□□□□ -0.49
VPS53-203ENST00000401468 RASSF7Q02833 373 aa11.96□□□□□ -0.49
VPS53-203ENST00000401468 RYDENQ9NUL5 291 aaKnown RBP11.96□□□□□ -0.49
VPS53-203ENST00000401468 NARFQ9UHQ1 456 aa11.96□□□□□ -0.49
VPS53-203ENST00000401468 LAMB2P55268 1798 aa11.96□□□□□ -0.49
VPS53-203ENST00000401468 WDR90Q96KV7 1748 aa11.95□□□□□ -0.5
VPS53-203ENST00000401468 FAM177BA6PVY3 158 aa11.95□□□□□ -0.5
VPS53-203ENST00000401468 SERPINB2P05120 415 aa11.95□□□□□ -0.5
VPS53-203ENST00000401468 GPBP1L1Q9HC44 474 aaPredicted RBP11.95□□□□□ -0.5
VPS53-203ENST00000401468 PCDHGA4Q9Y5G9 962 aa11.95□□□□□ -0.5
VPS53-203ENST00000401468 ANKRD36CQ5JPF3 1778 aa11.95□□□□□ -0.5
VPS53-203ENST00000401468 STARD3NLO95772 234 aa11.94□□□□□ -0.5
VPS53-203ENST00000401468 APLP1P51693 650 aa11.94□□□□□ -0.5
VPS53-203ENST00000401468 EIF5P55010 431 aaKnown RBP11.94□□□□□ -0.5
VPS53-203ENST00000401468 TGFB2P61812 414 aa11.94□□□□□ -0.5
VPS53-203ENST00000401468 GNAI1P63096 354 aa11.94□□□□□ -0.5
VPS53-203ENST00000401468 FMNL2Q96PY5 1086 aa11.94□□□□□ -0.5
VPS53-203ENST00000401468 SLFN5Q08AF3 891 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms