RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 IL6STP40189 918 aaPredicted RBP14.59□□□□□ -0.07
SKA3-203ENST00000400018 TBC1D9BQ66K14 1250 aa14.59□□□□□ -0.07
SKA3-203ENST00000400018 LMBR1LQ6UX01 489 aa14.59□□□□□ -0.07
SKA3-203ENST00000400018 GIGYF2Q6Y7W6 1299 aaKnown RBP14.59□□□□□ -0.07
SKA3-203ENST00000400018 BCL2L12Q9HB09 334 aa14.59□□□□□ -0.07
SKA3-203ENST00000400018 NIP7Q9Y221 180 aaKnown RBP eCLIP14.59□□□□□ -0.07
SKA3-203ENST00000400018 HDAC1Q13547 482 aaPredicted RBP14.58□□□□□ -0.07
SKA3-203ENST00000400018 CWC25Q9NXE8 425 aaPredicted RBP14.58□□□□□ -0.07
SKA3-203ENST00000400018 NLRP10Q86W26 655 aa14.58□□□□□ -0.08
SKA3-203ENST00000400018 AK7Q96M32 723 aa14.58□□□□□ -0.08
SKA3-203ENST00000400018 TRMT112Q9UI30 125 aaKnown RBP14.58□□□□□ -0.08
SKA3-203ENST00000400018 AFDNP55196 1824 aaKnown RBP14.58□□□□□ -0.08
SKA3-203ENST00000400018 ATP8B2P98198 1209 aa14.57□□□□□ -0.08
SKA3-203ENST00000400018 C3orf67Q6ZVT6 689 aa14.57□□□□□ -0.08
SKA3-203ENST00000400018 UBE2Q2Q8WVN8 375 aa14.57□□□□□ -0.08
SKA3-203ENST00000400018 NHSQ6T4R5 1651 aa14.57□□□□□ -0.08
SKA3-203ENST00000400018 CASP7P55210 303 aa14.57□□□□□ -0.08
SKA3-203ENST00000400018 SNAP23O00161 211 aa14.56□□□□□ -0.08
SKA3-203ENST00000400018 ALDH1L1O75891 902 aa14.56□□□□□ -0.08
SKA3-203ENST00000400018 MAP4K4O95819 1239 aaPredicted RBP14.56□□□□□ -0.08
SKA3-203ENST00000400018 SMC5Q8IY18 1101 aa14.56□□□□□ -0.08
SKA3-203ENST00000400018 ISCA1Q9BUE6 129 aa14.56□□□□□ -0.08
SKA3-203ENST00000400018 PUS3Q9BZE2 481 aaKnown RBP14.56□□□□□ -0.08
SKA3-203ENST00000400018 RTCBQ9Y3I0 505 aaKnown RBP14.56□□□□□ -0.08
SKA3-203ENST00000400018 FAM161AQ3B820 660 aa14.56□□□□□ -0.08
SKA3-203ENST00000400018 CHD1LQ86WJ1 897 aa14.55□□□□□ -0.08
SKA3-203ENST00000400018 TFCP2L1Q9NZI6 479 aa14.55□□□□□ -0.08
SKA3-203ENST00000400018 WWC3Q9ULE0 1092 aa14.55□□□□□ -0.08
SKA3-203ENST00000400018 ERBB4Q15303 1308 aa14.55□□□□□ -0.08
SKA3-203ENST00000400018 WTIPA6NIX2 430 aaPredicted RBP14.55□□□□□ -0.08
SKA3-203ENST00000400018 FOXO4P98177 505 aa14.55□□□□□ -0.08
SKA3-203ENST00000400018 OS9Q13438 667 aaPredicted RBP14.55□□□□□ -0.08
SKA3-203ENST00000400018 DCTPP1Q9H773 170 aa14.55□□□□□ -0.08
SKA3-203ENST00000400018 NDUFB9Q9Y6M9 179 aa14.55□□□□□ -0.08
SKA3-203ENST00000400018 RPAP2Q8IXW5 612 aaPredicted RBP14.54□□□□□ -0.08
SKA3-203ENST00000400018 RFC4P35249 363 aa14.54□□□□□ -0.08
SKA3-203ENST00000400018 LRRC24Q50LG9 513 aa14.54□□□□□ -0.08
SKA3-203ENST00000400018 NUP188Q5SRE5 1749 aa14.54□□□□□ -0.08
SKA3-203ENST00000400018 H7C1W4 665 aa14.53□□□□□ -0.08
SKA3-203ENST00000400018 NUCB1Q02818 461 aa14.53□□□□□ -0.08
SKA3-203ENST00000400018 SEC31BQ9NQW1 1179 aa14.53□□□□□ -0.08
SKA3-203ENST00000400018 NUP98P52948 1817 aa14.53□□□□□ -0.08
SKA3-203ENST00000400018 RPS6KA4O75676 772 aa14.53□□□□□ -0.08
SKA3-203ENST00000400018 ERFEQ4G0M1 354 aa14.53□□□□□ -0.08
SKA3-203ENST00000400018 CHMP4AQ9BY43 222 aa14.53□□□□□ -0.08
SKA3-203ENST00000400018 GREM2Q9H772 168 aa14.53□□□□□ -0.08
SKA3-203ENST00000400018 TLR7Q9NYK1 1049 aaKnown RBP14.53□□□□□ -0.08
SKA3-203ENST00000400018 IRS4O14654 1257 aaPredicted RBP14.52□□□□□ -0.08
SKA3-203ENST00000400018 ZPR1O75312 459 aa14.52□□□□□ -0.08
SKA3-203ENST00000400018 SEC24BO95487 1268 aa14.52□□□□□ -0.08
SKA3-203ENST00000400018 TRAPPC3LQ5T215 181 aa14.52□□□□□ -0.08
SKA3-203ENST00000400018 PXDNLA1KZ92 1463 aa14.52□□□□□ -0.09
SKA3-203ENST00000400018 ZNF34Q8IZ26 560 aa14.52□□□□□ -0.09
SKA3-203ENST00000400018 CCDC191Q8NCU4 936 aa14.52□□□□□ -0.09
SKA3-203ENST00000400018 HELBQ8NG08 1087 aaPredicted RBP14.52□□□□□ -0.09
SKA3-203ENST00000400018 SSH3Q8TE77 659 aa14.52□□□□□ -0.09
SKA3-203ENST00000400018 CCDC8Q9H0W5 538 aaPredicted RBP14.51□□□□□ -0.09
SKA3-203ENST00000400018 COL5A3P25940 1745 aaPredicted RBP14.51□□□□□ -0.09
SKA3-203ENST00000400018 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.51□□□□□ -0.09
SKA3-203ENST00000400018 TAF1P21675 1872 aa14.51□□□□□ -0.09
SKA3-203ENST00000400018 SASH1O94885 1247 aa14.5□□□□□ -0.09
SKA3-203ENST00000400018 COL23A1Q86Y22 540 aaPredicted RBP14.5□□□□□ -0.09
SKA3-203ENST00000400018 COL4A1P02462 1669 aa14.5□□□□□ -0.09
SKA3-203ENST00000400018 NPHP1O15259 732 aa14.5□□□□□ -0.09
SKA3-203ENST00000400018 PTPN12Q05209 780 aaKnown RBP14.5□□□□□ -0.09
SKA3-203ENST00000400018 CNTNAP4Q9C0A0 1308 aa14.5□□□□□ -0.09
SKA3-203ENST00000400018 C4BP0C0L5 1744 aa14.5□□□□□ -0.09
SKA3-203ENST00000400018 GTF2E1P29083 439 aaPredicted RBP14.5□□□□□ -0.09
SKA3-203ENST00000400018 POLA2Q14181 598 aa14.5□□□□□ -0.09
SKA3-203ENST00000400018 TAF1LQ8IZX4 1826 aa14.49□□□□□ -0.09
SKA3-203ENST00000400018 ZBTB38Q8NAP3 1195 aaPredicted RBP14.49□□□□□ -0.09
SKA3-203ENST00000400018 UTYO14607 1347 aa14.49□□□□□ -0.09
SKA3-203ENST00000400018 LY75O60449 1722 aa14.49□□□□□ -0.09
SKA3-203ENST00000400018 RFX5P48382 616 aaPredicted RBP14.49□□□□□ -0.09
SKA3-203ENST00000400018 NFIXQ14938 502 aa14.49□□□□□ -0.09
SKA3-203ENST00000400018 ABCC12Q96J65 1359 aa14.48□□□□□ -0.09
SKA3-203ENST00000400018 HMMRO75330 724 aa14.48□□□□□ -0.09
SKA3-203ENST00000400018 NTSR2O95665 410 aa14.48□□□□□ -0.09
SKA3-203ENST00000400018 TFCP2Q12800 502 aa14.48□□□□□ -0.09
SKA3-203ENST00000400018 RHPN1Q8TCX5 695 aa14.48□□□□□ -0.09
SKA3-203ENST00000400018 NARFQ9UHQ1 456 aa14.48□□□□□ -0.09
SKA3-203ENST00000400018 CHGBP05060 677 aa14.48□□□□□ -0.09
SKA3-203ENST00000400018 GYS1P13807 737 aa14.48□□□□□ -0.09
SKA3-203ENST00000400018 PLEKHM2Q8IWE5 1019 aa14.48□□□□□ -0.09
SKA3-203ENST00000400018 CHMP4BQ9H444 224 aaKnown RBP14.48□□□□□ -0.09
SKA3-203ENST00000400018 ERVV-1B6SEH8 477 aa14.47□□□□□ -0.09
SKA3-203ENST00000400018 GSPT1P15170 499 aaKnown RBP14.47□□□□□ -0.09
SKA3-203ENST00000400018 TIMM10P62072 90 aa14.47□□□□□ -0.09
SKA3-203ENST00000400018 TTLL11Q8NHH1 800 aa14.47□□□□□ -0.09
SKA3-203ENST00000400018 GCC1Q96CN9 775 aa14.47□□□□□ -0.09
SKA3-203ENST00000400018 LRRCC1Q9C099 1032 aa14.47□□□□□ -0.09
SKA3-203ENST00000400018 USP42Q9H9J4 1324 aaKnown RBP14.47□□□□□ -0.09
SKA3-203ENST00000400018 ITGA6P23229 1130 aa14.47□□□□□ -0.09
SKA3-203ENST00000400018 NBPF5PQ86XG9 351 aaPredicted RBP14.47□□□□□ -0.09
SKA3-203ENST00000400018 EDC3Q96F86 508 aaKnown RBP14.47□□□□□ -0.09
SKA3-203ENST00000400018 UTP14AQ9BVJ6 771 aaKnown RBP14.47□□□□□ -0.09
SKA3-203ENST00000400018 PCCAP05165 728 aaPredicted RBP14.46□□□□□ -0.09
SKA3-203ENST00000400018 CAMKK2Q96RR4 588 aa14.46□□□□□ -0.09
SKA3-203ENST00000400018 SETDB2Q96T68 719 aa14.46□□□□□ -0.09
SKA3-203ENST00000400018 TAF5LO75529 589 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms