RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 ABTB2Q8N961 1025 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 RASSF4Q9H2L5 321 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 STMN1P16949 149 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 C10orf67Q8IYJ2 551 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 CLNS1AP54105 237 aaKnown RBP11.78□□□□□ -0.52
COL4A4-201ENST00000396625 PRPF40BQ6NWY9 871 aaKnown RBP11.78□□□□□ -0.52
COL4A4-201ENST00000396625 CTCFLQ8NI51 663 aaPredicted RBP11.78□□□□□ -0.52
COL4A4-201ENST00000396625 PPP1R9BQ96SB3 815 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 CDCA7LQ96GN5 454 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 CCDC94Q9BW85 323 aaPredicted RBP11.78□□□□□ -0.52
COL4A4-201ENST00000396625 TMOD2Q9NZR1 351 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 RAD54L2Q9Y4B4 1467 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 BICD1Q96G01 975 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 ATF7IPQ6VMQ6 1270 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 SMIM23A6NLE4 172 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 LMNTD2Q8IXW0 634 aa11.78□□□□□ -0.52
COL4A4-201ENST00000396625 RBM28Q9NW13 759 aaKnown RBP11.78□□□□□ -0.52
COL4A4-201ENST00000396625 ATP2A2P16615 1042 aaKnown RBP11.77□□□□□ -0.52
COL4A4-201ENST00000396625 FAM76AQ8TAV0 307 aa11.77□□□□□ -0.52
COL4A4-201ENST00000396625 PYM1Q9BRP8 204 aaKnown RBP11.77□□□□□ -0.52
COL4A4-201ENST00000396625 GGNBP2Q9H3C7 697 aa11.77□□□□□ -0.52
COL4A4-201ENST00000396625 RAB11FIP3O75154 756 aa11.77□□□□□ -0.52
COL4A4-201ENST00000396625 TERF1P54274 439 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 CCDC50Q8IVM0 306 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 JAKMIP2Q96AA8 810 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 TCHPQ9BT92 498 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 PFDN4Q9NQP4 134 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.77□□□□□ -0.53
COL4A4-201ENST00000396625 GOLGA8AA7E2F4 631 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 SF3B2Q13435 895 aaKnown RBP11.77□□□□□ -0.53
COL4A4-201ENST00000396625 TSNAXIP1Q2TAA8 658 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 NBPF11Q86T75 865 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 NAPBQ9H115 298 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 CRCPO75575 148 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 CABP4P57796 275 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 CRACR2BQ8N4Y2 399 aaPredicted RBP11.77□□□□□ -0.53
COL4A4-201ENST00000396625 TCP11L1Q9NUJ3 509 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 A0A1B0GUL7 405 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 MINDY4BA8MYZ0 360 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 POLR3DP05423 398 aaPredicted RBP11.77□□□□□ -0.53
COL4A4-201ENST00000396625 FAM160A1Q05DH4 1040 aa11.77□□□□□ -0.53
COL4A4-201ENST00000396625 PRR16Q569H4 304 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 INTS8Q75QN2 995 aaKnown RBP11.76□□□□□ -0.53
COL4A4-201ENST00000396625 B4GALNT4Q76KP1 1039 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 PPFIBP2Q8ND30 876 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 CTAGE1Q96RT6 745 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 AKR1B10O60218 316 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 PLCD3Q8N3E9 789 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 MYOM3Q5VTT5 1437 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 IGHMBP2P38935 993 aaKnown RBP11.76□□□□□ -0.53
COL4A4-201ENST00000396625 KANK3Q6NY19 840 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 TRIM47Q96LD4 638 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 BAG4O95429 457 aaKnown RBP11.76□□□□□ -0.53
COL4A4-201ENST00000396625 CATIPQ7Z7H3 387 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 WHAMMQ8TF30 809 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 TNPO1Q92973 898 aaKnown RBP11.76□□□□□ -0.53
COL4A4-201ENST00000396625 MMRN2Q9H8L6 949 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 WDR63Q8IWG1 891 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 DDX27Q96GQ7 796 aaKnown RBP11.76□□□□□ -0.53
COL4A4-201ENST00000396625 CAPZA3Q96KX2 299 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 TXNDC16Q9P2K2 825 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 MYCNP04198 464 aaPredicted RBP11.76□□□□□ -0.53
COL4A4-201ENST00000396625 PLEKHH2Q8IVE3 1493 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 MKNK2Q9HBH9 465 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 FGD6Q6ZV73 1430 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 ZNF165P49910 485 aa11.76□□□□□ -0.53
COL4A4-201ENST00000396625 GUCY1B3Q02153 619 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 CEP128Q6ZU80 1094 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 N4BP3O15049 544 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 MX1P20591 662 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 KIAA1524Q8TCG1 905 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 ARHGAP5Q13017 1502 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 VCXQ9H320 206 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 RUSC2Q8N2Y8 1516 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 PPP1R12CQ9BZL4 782 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 WDR97A6NE52 1622 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 UBASH3AP57075 661 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 NLRP6P59044 892 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 UBE2HP62256 183 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 KCNK9Q9NPC2 374 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 SAMM50Q9Y512 469 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 WDR70Q9NW82 654 aa11.75□□□□□ -0.53
COL4A4-201ENST00000396625 CYLC1P35663 651 aaPredicted RBP11.74□□□□□ -0.53
COL4A4-201ENST00000396625 TUBB4BP68371 445 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 RMND1Q9NWS8 449 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 CEP126Q9P2H0 1117 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 ABCF2Q9UG63 623 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 TMEM110-MUSTN1A8MSY1 372 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 TBCAO75347 108 aaKnown RBP11.74□□□□□ -0.53
COL4A4-201ENST00000396625 EEF2P13639 858 aaKnown RBP11.74□□□□□ -0.53
COL4A4-201ENST00000396625 ZSCAN23Q3MJ62 389 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 CCDC25Q86WR0 208 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 AKAP2Q9Y2D5 859 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 RANBP6O60518 1105 aaKnown RBP11.74□□□□□ -0.53
COL4A4-201ENST00000396625 NEDD9Q14511 834 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 ERCC6LQ2NKX8 1250 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 ISM2Q6H9L7 571 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 FCHSD2O94868 740 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 SSFA2P28290 1259 aa11.74□□□□□ -0.53
COL4A4-201ENST00000396625 FYB2Q5VWT5 728 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms