RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 NOLC1Q14978 699 aaKnown RBP eCLIP11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 CCDC12Q8WUD4 166 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 ARHGEF11O15085 1522 aa11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 SPDYE4A6NLX3 237 aa11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 MATR3P43243 847 aaKnown RBP eCLIP11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 PPP1R42Q7Z4L9 355 aa11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 ZKSCAN5Q9Y2L8 839 aa11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 TUBB4AP04350 444 aa11.77□□□□□ -0.52
LIMCH1-203ENST00000396595 MBIPQ9NS73 344 aa11.77□□□□□ -0.52
LIMCH1-203ENST00000396595 TMOD2Q9NZR1 351 aa11.77□□□□□ -0.52
LIMCH1-203ENST00000396595 PTCD1O75127 700 aaKnown RBP11.77□□□□□ -0.52
LIMCH1-203ENST00000396595 IVLP07476 585 aa11.77□□□□□ -0.52
LIMCH1-203ENST00000396595 SDSP20132 328 aa11.77□□□□□ -0.52
LIMCH1-203ENST00000396595 TTF1Q15361 905 aaPredicted RBP11.77□□□□□ -0.52
LIMCH1-203ENST00000396595 TCP11L1Q9NUJ3 509 aa11.77□□□□□ -0.52
LIMCH1-203ENST00000396595 LMAN1P49257 510 aa11.77□□□□□ -0.53
LIMCH1-203ENST00000396595 ZNF444Q8N0Y2 327 aaPredicted RBP11.77□□□□□ -0.53
LIMCH1-203ENST00000396595 RALGAPBQ86X10 1494 aa11.77□□□□□ -0.53
LIMCH1-203ENST00000396595 FAM135AQ9P2D6 1515 aa11.77□□□□□ -0.53
LIMCH1-203ENST00000396595 ANKRD36BQ8N2N9 1353 aa11.77□□□□□ -0.53
LIMCH1-203ENST00000396595 ANKRD18BA2A2Z9 1011 aa11.77□□□□□ -0.53
LIMCH1-203ENST00000396595 HS1BP3Q53T59 392 aa11.77□□□□□ -0.53
LIMCH1-203ENST00000396595 NCOA7Q8NI08 942 aa11.77□□□□□ -0.53
LIMCH1-203ENST00000396595 UBA5Q9GZZ9 404 aa11.77□□□□□ -0.53
LIMCH1-203ENST00000396595 ADGRF5Q8IZF2 1346 aa11.77□□□□□ -0.53
LIMCH1-203ENST00000396595 GOLIM4O00461 696 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 DNA2P51530 1060 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 TMEM67Q5HYA8 995 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 DZIP1Q86YF9 867 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 GOPCQ9HD26 462 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 TMOD3Q9NYL9 352 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 PCDHB15Q9Y5E8 787 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 WASLO00401 505 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 CALML4Q96GE6 196 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 TMX1Q9H3N1 280 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 METAP2P50579 478 aaKnown RBP eCLIP11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 CKAP4Q07065 602 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 RHPN1Q8TCX5 695 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 SKILP12757 684 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 ARID4AP29374 1257 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 KIF5BP33176 963 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 UBA7P41226 1012 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 KCNG4Q8TDN1 519 aa11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.76□□□□□ -0.53
LIMCH1-203ENST00000396595 DNMBPQ6XZF7 1577 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 POGZQ7Z3K3 1410 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 LIG1P18858 919 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 SYKP43405 635 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 CETN1Q12798 172 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 GIGYF2Q6Y7W6 1299 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 NEBLO76041 1014 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 STAMBPO95630 424 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 CCDC40Q4G0X9 1142 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 CCDC186Q7Z3E2 898 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 ARFGAP3Q9NP61 516 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 MRVI1Q9Y6F6 885 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 DISP3Q9P2K9 1392 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 N4BP3O15049 544 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 BMP15O95972 392 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 TRIM21P19474 475 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 HMGB2P26583 209 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 UBASH3AP57075 661 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 HOOK3Q86VS8 718 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 ANKRD44Q8N8A2 993 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 ESYT1Q9BSJ8 1104 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 MAP3K2Q9Y2U5 619 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 BRD2P25440 801 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 SPAG1Q07617 926 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 SPECC1LQ69YQ0 1117 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 MPRIPQ6WCQ1 1025 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 ZFP91Q96JP5 570 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 SRRTQ9BXP5 876 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 IQGAP2Q13576 1575 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 PDE1AP54750 535 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 ANO6Q4KMQ2 910 aa11.75□□□□□ -0.53
LIMCH1-203ENST00000396595 C8orf34Q49A92 452 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 BICDL1Q6ZP65 573 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 USP48Q86UV5 1035 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 MICU3Q86XE3 530 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 DNAI2Q9GZS0 605 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 RMND1Q9NWS8 449 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 HMGXB3Q12766 1538 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 CRACR2BQ8N4Y2 399 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 USHBP1Q8N6Y0 703 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 MRPS27Q92552 414 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 CTAGE1Q96RT6 745 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 TRMT112Q9UI30 125 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 CNPY2Q9Y2B0 182 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 AEBP2Q6ZN18 517 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 BRF1Q92994 677 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 LRRC27Q9C0I9 530 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 IDEP14735 1019 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 HSPA4P34932 840 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 TCHPQ9BT92 498 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 JADE2Q9NQC1 790 aa11.74□□□□□ -0.53
LIMCH1-203ENST00000396595 PI4KAP2A4QPH2 592 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 IFI16Q16666 785 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 TSHZ3Q63HK5 1081 aa11.73□□□□□ -0.53
LIMCH1-203ENST00000396595 GBP6Q6ZN66 633 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms