RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 GOLGA2Q08379 1002 aa9.89□□□□□ -0.83
HMGB3P1-201ENST00000393368 CCDC30Q5VVM6 783 aa9.89□□□□□ -0.83
HMGB3P1-201ENST00000393368 ANKRD13DQ6ZTN6 518 aa9.89□□□□□ -0.83
HMGB3P1-201ENST00000393368 SLC51AQ86UW1 340 aa9.89□□□□□ -0.83
HMGB3P1-201ENST00000393368 NLRP10Q86W26 655 aa9.89□□□□□ -0.83
HMGB3P1-201ENST00000393368 TTLL6Q8N841 843 aa9.89□□□□□ -0.83
HMGB3P1-201ENST00000393368 PLBD2Q8NHP8 589 aa9.89□□□□□ -0.83
HMGB3P1-201ENST00000393368 DLEC1Q9Y238 1755 aa9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 ABCB7O75027 752 aa9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 SRGNP10124 158 aa9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 TCIRG1Q13488 830 aa9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 RTL5Q5HYW3 569 aaPredicted RBP9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 OLFM4Q6UX06 510 aa9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 RIC3Q7Z5B4 369 aa9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 CDCA7LQ96GN5 454 aa9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 UTP14AQ9BVJ6 771 aaKnown RBP9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 NYXQ9GZU5 481 aa9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 IBTKQ9P2D0 1353 aaPredicted RBP9.88□□□□□ -0.83
HMGB3P1-201ENST00000393368 C21orf2O43822 256 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 VAMP4O75379 141 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 HCLS1P14317 486 aaPredicted RBP9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 PRELPP51888 382 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 PARP10Q53GL7 1025 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 HSP90AB3PQ58FF7 597 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 PRPF40BQ6NWY9 871 aaKnown RBP9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 PPP1R42Q7Z4L9 355 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 ZNF784Q8NCA9 323 aaPredicted RBP9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 ZNF526Q8TF50 670 aaPredicted RBP9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 MASTLQ96GX5 879 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 MYD88Q99836 296 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 ISCA1Q9BUE6 129 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 STK31Q9BXU1 1019 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 MYH16Q9H6N6 1097 aa9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 TRMT112Q9UI30 125 aaKnown RBP9.87□□□□□ -0.83
HMGB3P1-201ENST00000393368 ANKRD36CQ5JPF3 1778 aa9.86□□□□□ -0.83
HMGB3P1-201ENST00000393368 ARFGEF2Q9Y6D5 1785 aa9.86□□□□□ -0.83
HMGB3P1-201ENST00000393368 KLRG2A4D1S0 409 aaPredicted RBP9.86□□□□□ -0.83
HMGB3P1-201ENST00000393368 NPR1P16066 1061 aa9.86□□□□□ -0.83
HMGB3P1-201ENST00000393368 STYK1Q6J9G0 422 aa9.86□□□□□ -0.83
HMGB3P1-201ENST00000393368 JARID2Q92833 1246 aaPredicted RBP9.86□□□□□ -0.83
HMGB3P1-201ENST00000393368 MAP3K2Q9Y2U5 619 aa9.86□□□□□ -0.83
HMGB3P1-201ENST00000393368 ADCY9O60503 1353 aa9.86□□□□□ -0.83
HMGB3P1-201ENST00000393368 PI4KAP2A4QPH2 592 aa9.85□□□□□ -0.83
HMGB3P1-201ENST00000393368 NFKBIEO00221 500 aa9.85□□□□□ -0.83
HMGB3P1-201ENST00000393368 C9orf131Q5VYM1 1079 aa9.85□□□□□ -0.83
HMGB3P1-201ENST00000393368 PI4KAP1Q8N8J0 262 aa9.85□□□□□ -0.83
HMGB3P1-201ENST00000393368 CNKSR1Q969H4 720 aa9.85□□□□□ -0.83
HMGB3P1-201ENST00000393368 FAM89AQ96GI7 184 aa9.85□□□□□ -0.83
HMGB3P1-201ENST00000393368 PDZRN3Q9UPQ7 1066 aa9.85□□□□□ -0.83
HMGB3P1-201ENST00000393368 SH3TC1Q8TE82 1336 aa9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 ARFGEF1Q9Y6D6 1849 aa9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 RIC1Q4ADV7 1423 aa9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 DDX58O95786 925 aaKnown RBP9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 SLFN5Q08AF3 891 aa9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 FLIIQ13045 1269 aa9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 CWF19L2Q2TBE0 894 aaKnown RBP9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 CRY2Q49AN0 593 aa9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 RPGRQ92834 1020 aaKnown RBP9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 RNF181Q9P0P0 153 aa9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 SLX4Q8IY92 1834 aa9.84□□□□□ -0.83
HMGB3P1-201ENST00000393368 CACNA1SQ13698 1873 aa9.83□□□□□ -0.84
HMGB3P1-201ENST00000393368 E9PSI1 815 aa9.83□□□□□ -0.84
HMGB3P1-201ENST00000393368 F6X3S4 739 aa9.83□□□□□ -0.84
HMGB3P1-201ENST00000393368 IGKV5-2P06315 115 aa9.83□□□□□ -0.84
HMGB3P1-201ENST00000393368 FKBP5Q13451 457 aaPredicted RBP9.83□□□□□ -0.84
HMGB3P1-201ENST00000393368 KSR2Q6VAB6 950 aa9.83□□□□□ -0.84
HMGB3P1-201ENST00000393368 NLRP3Q96P20 1036 aa9.83□□□□□ -0.84
HMGB3P1-201ENST00000393368 METTL22Q9BUU2 404 aaPredicted RBP9.83□□□□□ -0.84
HMGB3P1-201ENST00000393368 CHD4Q14839 1912 aa9.83□□□□□ -0.84
HMGB3P1-201ENST00000393368 ABCC4O15439 1325 aa9.82□□□□□ -0.84
HMGB3P1-201ENST00000393368 SLC10A5Q5PT55 438 aa9.82□□□□□ -0.84
HMGB3P1-201ENST00000393368 C7orf43Q8WVR3 580 aa9.82□□□□□ -0.84
HMGB3P1-201ENST00000393368 BCL2L13Q9BXK5 485 aa9.82□□□□□ -0.84
HMGB3P1-201ENST00000393368 CHMP4AQ9BY43 222 aa9.82□□□□□ -0.84
HMGB3P1-201ENST00000393368 CWC25Q9NXE8 425 aaPredicted RBP9.82□□□□□ -0.84
HMGB3P1-201ENST00000393368 COL4A1P02462 1669 aa9.82□□□□□ -0.84
HMGB3P1-201ENST00000393368 RNF123Q5XPI4 1314 aa9.82□□□□□ -0.84
HMGB3P1-201ENST00000393368 IRS4O14654 1257 aaPredicted RBP9.81□□□□□ -0.84
HMGB3P1-201ENST00000393368 PPEF1O14829 653 aaPredicted RBP9.81□□□□□ -0.84
HMGB3P1-201ENST00000393368 ALDH1B1P30837 517 aa9.81□□□□□ -0.84
HMGB3P1-201ENST00000393368 HOXA10P31260 410 aaPredicted RBP9.81□□□□□ -0.84
HMGB3P1-201ENST00000393368 HNRNPUQ00839 825 aaKnown RBP eCLIP9.81□□□□□ -0.84
HMGB3P1-201ENST00000393368 TRIM28Q13263 835 aaKnown RBP9.81□□□□□ -0.84
HMGB3P1-201ENST00000393368 RBM17Q96I25 401 aaKnown RBP9.81□□□□□ -0.84
HMGB3P1-201ENST00000393368 CCDC85AQ96PX6 553 aaPredicted RBP9.81□□□□□ -0.84
HMGB3P1-201ENST00000393368 TAOK3Q9H2K8 898 aa9.81□□□□□ -0.84
HMGB3P1-201ENST00000393368 DDX60Q8IY21 1712 aaKnown RBP9.81□□□□□ -0.84
HMGB3P1-201ENST00000393368 LAMB2P55268 1798 aa9.8□□□□□ -0.84
HMGB3P1-201ENST00000393368 NEURL1BA8MQ27 555 aa9.8□□□□□ -0.84
HMGB3P1-201ENST00000393368 LMNB1P20700 586 aa9.8□□□□□ -0.84
HMGB3P1-201ENST00000393368 CCDC93Q567U6 631 aa9.8□□□□□ -0.84
HMGB3P1-201ENST00000393368 ZBTB38Q8NAP3 1195 aaPredicted RBP9.8□□□□□ -0.84
HMGB3P1-201ENST00000393368 CCDC191Q8NCU4 936 aa9.8□□□□□ -0.84
HMGB3P1-201ENST00000393368 DNAAF4Q8WXU2 420 aa9.8□□□□□ -0.84
HMGB3P1-201ENST00000393368 SSH1Q8WYL5 1049 aa9.8□□□□□ -0.84
HMGB3P1-201ENST00000393368 ZNF277Q9NRM2 450 aaPredicted RBP9.8□□□□□ -0.84
HMGB3P1-201ENST00000393368 PCCAP05165 728 aaPredicted RBP9.79□□□□□ -0.84
HMGB3P1-201ENST00000393368 NEXNQ0ZGT2 675 aa9.79□□□□□ -0.84
HMGB3P1-201ENST00000393368 TRMT2AQ8IZ69 625 aaKnown RBP9.79□□□□□ -0.84
HMGB3P1-201ENST00000393368 MRPL50Q8N5N7 158 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms