RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 SLC52A1Q9NWF4 448 aa13.83□□□□□ -0.2
PCDHA9-201ENST00000378122 PTPRCP08575 1304 aa13.83□□□□□ -0.2
PCDHA9-201ENST00000378122 NUCB1Q02818 461 aa13.83□□□□□ -0.2
PCDHA9-201ENST00000378122 OGFOD1Q8N543 542 aa13.83□□□□□ -0.2
PCDHA9-201ENST00000378122 CNPY2Q9Y2B0 182 aa13.83□□□□□ -0.2
PCDHA9-201ENST00000378122 PAXBP1Q9Y5B6 917 aa13.83□□□□□ -0.2
PCDHA9-201ENST00000378122 IQGAP2Q13576 1575 aa13.83□□□□□ -0.2
PCDHA9-201ENST00000378122 ZNF213O14771 459 aa13.83□□□□□ -0.2
PCDHA9-201ENST00000378122 GOLGA8AA7E2F4 631 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 TRIM21P19474 475 aaKnown RBP13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 KCNA4P22459 653 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 UBE2HP62256 183 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 RAB11FIP4Q86YS3 637 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 EVI5LQ96CN4 794 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 ZNF354CQ86Y25 554 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 ZBTB3Q9H5J0 574 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 SEC63Q9UGP8 760 aaKnown RBP13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 IFT140Q96RY7 1462 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 BAG6P46379 1132 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 CTR9Q6PD62 1173 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 TNIP1Q15025 636 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 HDAC9Q9UKV0 1011 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 DNMBPQ6XZF7 1577 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 POTEB2H3BUK9 544 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 LARP1Q6PKG0 1096 aaKnown RBP13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 NAPBQ9H115 298 aa13.82□□□□□ -0.2
PCDHA9-201ENST00000378122 BMS1Q14692 1282 aaKnown RBP13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 MSL1Q68DK7 614 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 MICALCLQ6ZW33 695 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 HCLS1P14317 486 aaPredicted RBP13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 LUZP1Q86V48 1076 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 DNAAF4Q8WXU2 420 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 JARID2Q92833 1246 aaPredicted RBP13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 VAT1LQ9HCJ6 419 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 YEATS4O95619 227 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 CUL7Q14999 1698 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 IFFO1Q0D2I5 559 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 MBIPQ9NS73 344 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 SETDB2Q96T68 719 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 TMX3Q96JJ7 454 aa13.81□□□□□ -0.2
PCDHA9-201ENST00000378122 NOLC1Q14978 699 aaKnown RBP eCLIP13.8□□□□□ -0.2
PCDHA9-201ENST00000378122 ARHGAP27Q6ZUM4 889 aa13.8□□□□□ -0.2
PCDHA9-201ENST00000378122 GOLGA6L10A0A0M3HER8 536 aa13.8□□□□□ -0.2
PCDHA9-201ENST00000378122 TIGD1Q96MW7 591 aa13.8□□□□□ -0.2
PCDHA9-201ENST00000378122 USP48Q86UV5 1035 aa13.8□□□□□ -0.2
PCDHA9-201ENST00000378122 MAP3K2Q9Y2U5 619 aa13.8□□□□□ -0.2
PCDHA9-201ENST00000378122 FAM83GA6ND36 823 aa13.8□□□□□ -0.2
PCDHA9-201ENST00000378122 PUS7Q96PZ0 661 aaKnown RBP13.8□□□□□ -0.2
PCDHA9-201ENST00000378122 ZSCAN22P10073 491 aaPredicted RBP13.8□□□□□ -0.2
PCDHA9-201ENST00000378122 SMARCC1Q92922 1105 aaPredicted RBP13.8□□□□□ -0.2
PCDHA9-201ENST00000378122 C8orf34Q49A92 452 aa13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 ANO6Q4KMQ2 910 aa13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 NECAB1Q8N987 351 aa13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 PHAXQ9H814 394 aaKnown RBP13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 RANBP6O60518 1105 aaKnown RBP13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 ZSWIM4Q9H7M6 989 aa13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 COMMD10Q9Y6G5 202 aa13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 FAM98CQ17RN3 349 aaKnown RBP13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 BCS1LQ9Y276 419 aa13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 SCAF11Q99590 1463 aaKnown RBP13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 MAGI1Q96QZ7 1491 aaPredicted RBP13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 ADGRF5Q8IZF2 1346 aa13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 ZNF165P49910 485 aa13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 PICALMQ13492 652 aa13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 IPO4Q8TEX9 1081 aaKnown RBP13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 FAM107BQ9H098 131 aa13.79□□□□□ -0.2
PCDHA9-201ENST00000378122 IFIT3O14879 490 aaKnown RBP13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 USO1O60763 962 aaKnown RBP13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 EZRP15311 586 aaKnown RBP13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 NLRP5P59047 1200 aa13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 KRT222Q8N1A0 295 aa13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 CCDC150Q8NCX0 1101 aa13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 FLIIQ13045 1269 aa13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 TDRD12Q587J7 1177 aaKnown RBP13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 USP21Q9UK80 565 aa13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 RPRD2Q5VT52 1461 aaKnown RBP13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 CCDC171Q6TFL3 1326 aa13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 DHX29Q7Z478 1369 aaKnown RBP13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 GOLIM4O00461 696 aa13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 SDSP20132 328 aa13.78□□□□□ -0.2
PCDHA9-201ENST00000378122 CCDC12Q8WUD4 166 aaPredicted RBP13.77□□□□□ -0.2
PCDHA9-201ENST00000378122 NEK1Q96PY6 1258 aa13.77□□□□□ -0.2
PCDHA9-201ENST00000378122 MMRN2Q9H8L6 949 aa13.77□□□□□ -0.2
PCDHA9-201ENST00000378122 ZRANB1Q9UGI0 708 aa13.77□□□□□ -0.2
PCDHA9-201ENST00000378122 PPP1R12BO60237 982 aaPredicted RBP13.77□□□□□ -0.21
PCDHA9-201ENST00000378122 HAND2P61296 217 aa13.77□□□□□ -0.21
PCDHA9-201ENST00000378122 CABP5Q9NP86 173 aa13.77□□□□□ -0.21
PCDHA9-201ENST00000378122 CCDC196A0A1B0GTZ2 297 aa13.77□□□□□ -0.21
PCDHA9-201ENST00000378122 CCDC61Q9Y6R9 512 aa13.77□□□□□ -0.21
PCDHA9-201ENST00000378122 CCDC91Q7Z6B0 441 aa13.77□□□□□ -0.21
PCDHA9-201ENST00000378122 USP16Q9Y5T5 823 aa13.77□□□□□ -0.21
PCDHA9-201ENST00000378122 PAFAH1B1P43034 410 aa13.76□□□□□ -0.21
PCDHA9-201ENST00000378122 MTIF2P46199 727 aaKnown RBP13.76□□□□□ -0.21
PCDHA9-201ENST00000378122 ZNF444Q8N0Y2 327 aaPredicted RBP13.76□□□□□ -0.21
PCDHA9-201ENST00000378122 CUL5Q93034 780 aa13.76□□□□□ -0.21
PCDHA9-201ENST00000378122 SAMM50Q9Y512 469 aa13.76□□□□□ -0.21
PCDHA9-201ENST00000378122 PCDHB15Q9Y5E8 787 aa13.76□□□□□ -0.21
PCDHA9-201ENST00000378122 HDAC1Q13547 482 aaPredicted RBP13.76□□□□□ -0.21
PCDHA9-201ENST00000378122 ECHDC1Q9NTX5 307 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms