RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 CNGA1P29973 690 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 GEN1Q17RS7 908 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 NUF2Q9BZD4 464 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 TRIM7Q9C029 511 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 GGNBP2Q9H3C7 697 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 GAS8O95995 478 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 SLC4A2P04920 1241 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 GABPB2Q8TAK5 448 aaPredicted RBP12.16□□□□□ -0.46
RTN3-206ENST00000377819 TIAM1Q13009 1591 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 RANBP6O60518 1105 aaKnown RBP12.15□□□□□ -0.46
RTN3-206ENST00000377819 STARD3NLO95772 234 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 ESCO1Q5FWF5 840 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 METTL24Q5JXM2 366 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 ZNF530Q6P9A1 599 aaPredicted RBP12.15□□□□□ -0.46
RTN3-206ENST00000377819 CTAGE5O15320 804 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 C8orf76Q96K31 380 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 TRERF1Q96PN7 1200 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 SELENOOQ9BVL4 669 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 PRKRIP1Q9H875 184 aaPredicted RBP12.15□□□□□ -0.46
RTN3-206ENST00000377819 HYPKQ9NX55 129 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 K7ELQ4 463 aaPredicted RBP12.15□□□□□ -0.46
RTN3-206ENST00000377819 KRT13P13646 458 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 KIF5BP33176 963 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 MAP3K12Q12852 859 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 GRPEL1Q9HAV7 217 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 ZPR1O75312 459 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 PCF11O94913 1555 aaKnown RBP12.15□□□□□ -0.46
RTN3-206ENST00000377819 CNNM3Q8NE01 707 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 VCX3BQ9H321 246 aa12.15□□□□□ -0.46
RTN3-206ENST00000377819 CIZ1Q9ULV3 898 aaPredicted RBP12.14□□□□□ -0.47
RTN3-206ENST00000377819 LUC7L2Q9Y383 392 aaKnown RBP12.14□□□□□ -0.47
RTN3-206ENST00000377819 SRGAP3O43295 1099 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 MVPQ14764 893 aaKnown RBP12.14□□□□□ -0.47
RTN3-206ENST00000377819 ERMNQ8TAM6 284 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 STAC3Q96MF2 364 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 ANKFY1Q9P2R3 1169 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 CARMIL1Q5VZK9 1371 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 DHX57Q6P158 1386 aaKnown RBP12.14□□□□□ -0.47
RTN3-206ENST00000377819 GSDMDP57764 484 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 INF2Q27J81 1249 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 AFG3L2Q9Y4W6 797 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 SMG6Q86US8 1419 aaKnown RBP12.14□□□□□ -0.47
RTN3-206ENST00000377819 NBPF7P0C2Y1 421 aaPredicted RBP12.14□□□□□ -0.47
RTN3-206ENST00000377819 ATP6V1E1P36543 226 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 ANKIB1Q9P2G1 1089 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 GRIN2BQ13224 1484 aa12.14□□□□□ -0.47
RTN3-206ENST00000377819 CRCPO75575 148 aa12.13□□□□□ -0.47
RTN3-206ENST00000377819 SETSIPP0DME0 302 aa12.13□□□□□ -0.47
RTN3-206ENST00000377819 MTHFSP49914 203 aa12.13□□□□□ -0.47
RTN3-206ENST00000377819 MSL1Q68DK7 614 aa12.13□□□□□ -0.47
RTN3-206ENST00000377819 USH1CQ9Y6N9 552 aa12.13□□□□□ -0.47
RTN3-206ENST00000377819 FERMT3Q86UX7 667 aa12.13□□□□□ -0.47
RTN3-206ENST00000377819 ARFGAP2Q8N6H7 521 aa12.13□□□□□ -0.47
RTN3-206ENST00000377819 DACT3Q96B18 629 aaPredicted RBP12.13□□□□□ -0.47
RTN3-206ENST00000377819 SWAP70Q9UH65 585 aa12.13□□□□□ -0.47
RTN3-206ENST00000377819 ZSCAN30Q86W11 494 aa12.13□□□□□ -0.47
RTN3-206ENST00000377819 WHAMMQ8TF30 809 aa12.13□□□□□ -0.47
RTN3-206ENST00000377819 NUP160Q12769 1436 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 GSTA5Q7RTV2 222 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 VPS52Q8N1B4 723 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.12□□□□□ -0.47
RTN3-206ENST00000377819 MYL6BP14649 208 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 CASTP20810 708 aaKnown RBP12.12□□□□□ -0.47
RTN3-206ENST00000377819 JAKMIP2Q96AA8 810 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 CATIPQ7Z7H3 387 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 GSDMBQ8TAX9 411 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 SLC12A7Q9Y666 1083 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 GAPVD1Q14C86 1478 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 HLA-DOAP06340 250 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 CWC27Q6UX04 472 aaKnown RBP12.12□□□□□ -0.47
RTN3-206ENST00000377819 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.12□□□□□ -0.47
RTN3-206ENST00000377819 TBC1D31Q96DN5 1066 aa12.12□□□□□ -0.47
RTN3-206ENST00000377819 CLASP1Q7Z460 1538 aa12.11□□□□□ -0.47
RTN3-206ENST00000377819 MAP7Q14244 749 aa12.11□□□□□ -0.47
RTN3-206ENST00000377819 TTF1Q15361 905 aaPredicted RBP12.11□□□□□ -0.47
RTN3-206ENST00000377819 ERCC5P28715 1186 aaPredicted RBP12.11□□□□□ -0.47
RTN3-206ENST00000377819 CLUL1Q15846 466 aa12.11□□□□□ -0.47
RTN3-206ENST00000377819 KANK3Q6NY19 840 aa12.11□□□□□ -0.47
RTN3-206ENST00000377819 SDCCAG8Q86SQ7 713 aaPredicted RBP12.11□□□□□ -0.47
RTN3-206ENST00000377819 C6orf229H3BNL8 230 aa12.11□□□□□ -0.47
RTN3-206ENST00000377819 CYLC1P35663 651 aaPredicted RBP12.11□□□□□ -0.47
RTN3-206ENST00000377819 LMBR1Q8WVP7 490 aa12.11□□□□□ -0.47
RTN3-206ENST00000377819 MAGI1Q96QZ7 1491 aaPredicted RBP12.11□□□□□ -0.47
RTN3-206ENST00000377819 EEF2P13639 858 aaKnown RBP12.11□□□□□ -0.47
RTN3-206ENST00000377819 GRM1Q13255 1194 aa12.11□□□□□ -0.47
RTN3-206ENST00000377819 PDZRN3Q9UPQ7 1066 aa12.11□□□□□ -0.47
RTN3-206ENST00000377819 KIAA0556O60303 1618 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 DISP1Q96F81 1524 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 CFAP70Q5T0N1 1121 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 STMN2Q93045 179 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 HSPA1LP34931 641 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 MCM10Q7L590 875 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 CEP57Q86XR8 500 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 N4BP3O15049 544 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 PRKAR2BP31323 418 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 NAA25Q14CX7 972 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 CCDC85AQ96PX6 553 aaPredicted RBP12.1□□□□□ -0.47
RTN3-206ENST00000377819 CHD1O14646 1710 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 PRR16Q569H4 304 aa12.1□□□□□ -0.47
RTN3-206ENST00000377819 TCP11L2Q8N4U5 519 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms