RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ORC3Q9UBD5 711 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-203ENST00000372407 RANBP6O60518 1105 aaKnown RBP13.23□□□□□ -0.29
PTPRF-203ENST00000372407 CBX1P83916 185 aa13.23□□□□□ -0.29
PTPRF-203ENST00000372407 TAF3Q5VWG9 929 aa13.23□□□□□ -0.29
PTPRF-203ENST00000372407 NEK1Q96PY6 1258 aa13.23□□□□□ -0.29
PTPRF-203ENST00000372407 CGNQ9P2M7 1197 aaKnown RBP13.23□□□□□ -0.29
PTPRF-203ENST00000372407 HCLS1P14317 486 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-203ENST00000372407 SDSP20132 328 aa13.23□□□□□ -0.29
PTPRF-203ENST00000372407 PAFAH1B1P43034 410 aa13.23□□□□□ -0.29
PTPRF-203ENST00000372407 LRRC59Q96AG4 307 aaKnown RBP13.23□□□□□ -0.29
PTPRF-203ENST00000372407 NPATQ14207 1427 aa13.23□□□□□ -0.29
PTPRF-203ENST00000372407 ANKRD62A6NC57 917 aa13.23□□□□□ -0.29
PTPRF-203ENST00000372407 FGFR1OPO95684 399 aaKnown RBP13.23□□□□□ -0.29
PTPRF-203ENST00000372407 MCM3P25205 808 aa13.23□□□□□ -0.29
PTPRF-203ENST00000372407 IARSP41252 1262 aaKnown RBP13.23□□□□□ -0.29
PTPRF-203ENST00000372407 RHPN1Q8TCX5 695 aa13.23□□□□□ -0.29
PTPRF-203ENST00000372407 POLR3DP05423 398 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-203ENST00000372407 CASQ1P31415 396 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 VPS36Q86VN1 386 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 FAM83GA6ND36 823 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 CETN2P41208 172 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 SSRP1Q08945 709 aaKnown RBP13.22□□□□□ -0.29
PTPRF-203ENST00000372407 TRMT112Q9UI30 125 aaKnown RBP13.22□□□□□ -0.29
PTPRF-203ENST00000372407 PIK3R4Q99570 1358 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 CCDC194A0A1B0GVG4 234 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 GOLIM4O00461 696 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 BIN1O00499 593 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 USO1O60763 962 aaKnown RBP13.22□□□□□ -0.29
PTPRF-203ENST00000372407 ZSCAN16Q9H4T2 348 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-203ENST00000372407 ARAP3Q8WWN8 1544 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 SLC5A1P13866 664 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 LTKP29376 864 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 ANAPC15P60006 121 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 ANKRD36BQ8N2N9 1353 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 ANKRD44Q8N8A2 993 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 RBM27Q9P2N5 1060 aaKnown RBP13.22□□□□□ -0.29
PTPRF-203ENST00000372407 MAP3K2Q9Y2U5 619 aa13.22□□□□□ -0.29
PTPRF-203ENST00000372407 ANKRD18BA2A2Z9 1011 aa13.21□□□□□ -0.29
PTPRF-203ENST00000372407 TSHZ3Q63HK5 1081 aa13.21□□□□□ -0.29
PTPRF-203ENST00000372407 SHROOM2Q13796 1616 aa13.21□□□□□ -0.29
PTPRF-203ENST00000372407 GOLGA6L9A6NEM1 432 aa13.21□□□□□ -0.29
PTPRF-203ENST00000372407 YEATS4O95619 227 aa13.21□□□□□ -0.29
PTPRF-203ENST00000372407 LRSAM1Q6UWE0 723 aa13.21□□□□□ -0.29
PTPRF-203ENST00000372407 TMC6Q7Z403 805 aa13.21□□□□□ -0.29
PTPRF-203ENST00000372407 CPLX3Q8WVH0 158 aa13.21□□□□□ -0.29
PTPRF-203ENST00000372407 MEIS3Q99687 375 aa13.21□□□□□ -0.29
PTPRF-203ENST00000372407 TSG101Q99816 390 aa13.21□□□□□ -0.29
PTPRF-203ENST00000372407 KIF20AO95235 890 aa13.21□□□□□ -0.3
PTPRF-203ENST00000372407 EZRP15311 586 aaKnown RBP13.21□□□□□ -0.3
PTPRF-203ENST00000372407 ZSCAN23Q3MJ62 389 aa13.21□□□□□ -0.3
PTPRF-203ENST00000372407 UBE3BQ7Z3V4 1068 aa13.21□□□□□ -0.3
PTPRF-203ENST00000372407 PRIMPOLQ96LW4 560 aa13.21□□□□□ -0.3
PTPRF-203ENST00000372407 ZSCAN22P10073 491 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-203ENST00000372407 PDE1AP54750 535 aa13.2□□□□□ -0.3
PTPRF-203ENST00000372407 CCDC102BQ68D86 513 aa13.2□□□□□ -0.3
PTPRF-203ENST00000372407 LDHAL6AQ6ZMR3 332 aa13.2□□□□□ -0.3
PTPRF-203ENST00000372407 ZNF444Q8N0Y2 327 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-203ENST00000372407 TMOD2Q9NZR1 351 aa13.2□□□□□ -0.3
PTPRF-203ENST00000372407 NUP88Q99567 741 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-203ENST00000372407 PLCD4Q9BRC7 762 aa13.2□□□□□ -0.3
PTPRF-203ENST00000372407 SHTN1A0MZ66 631 aa13.2□□□□□ -0.3
PTPRF-203ENST00000372407 NLRP5P59047 1200 aa13.2□□□□□ -0.3
PTPRF-203ENST00000372407 CATIPQ7Z7H3 387 aa13.2□□□□□ -0.3
PTPRF-203ENST00000372407 LUZP1Q86V48 1076 aa13.2□□□□□ -0.3
PTPRF-203ENST00000372407 DZIP1Q86YF9 867 aaKnown RBP13.2□□□□□ -0.3
PTPRF-203ENST00000372407 SNX21Q969T3 373 aa13.2□□□□□ -0.3
PTPRF-203ENST00000372407 DYNC1I1O14576 645 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 C8orf37Q96NL8 207 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 SNRKQ9NRH2 765 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 KDM5DQ9BY66 1539 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 CFAP65Q6ZU64 1925 aaKnown RBP13.19□□□□□ -0.3
PTPRF-203ENST00000372407 DCAF8L1A6NGE4 600 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 HMGB2P26583 209 aaKnown RBP13.19□□□□□ -0.3
PTPRF-203ENST00000372407 TTF1Q15361 905 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-203ENST00000372407 TMEM266Q2M3C6 531 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 ZBTB3Q9H5J0 574 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 XRCC6P12956 609 aaKnown RBP eCLIP13.19□□□□□ -0.3
PTPRF-203ENST00000372407 CLCN1P35523 988 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 GIMAP6Q6P9H5 292 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 BRF1Q92994 677 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 POTEJP0CG39 1038 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 SNW1Q13573 536 aaKnown RBP13.19□□□□□ -0.3
PTPRF-203ENST00000372407 KANK3Q6NY19 840 aa13.19□□□□□ -0.3
PTPRF-203ENST00000372407 TDRD12Q587J7 1177 aaKnown RBP13.18□□□□□ -0.3
PTPRF-203ENST00000372407 TMEM67Q5HYA8 995 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 MICU3Q86XE3 530 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 NCOA7Q8NI08 942 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 PZPP20742 1482 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 CHRNA2Q15822 529 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 RALGAPBQ86X10 1494 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 DESP17661 470 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 UBA7P41226 1012 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 IFNL2Q8IZJ0 200 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 ESYT1Q9BSJ8 1104 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 TCP11L1Q9NUJ3 509 aa13.18□□□□□ -0.3
PTPRF-203ENST00000372407 YTHDC2Q9H6S0 1430 aaKnown RBP13.18□□□□□ -0.3
PTPRF-203ENST00000372407 SSR1P43307 286 aaKnown RBP13.17□□□□□ -0.3
PTPRF-203ENST00000372407 HAND2P61296 217 aa13.17□□□□□ -0.3
PTPRF-203ENST00000372407 PYM1Q9BRP8 204 aaKnown RBP13.17□□□□□ -0.3
PTPRF-203ENST00000372407 CWC25Q9NXE8 425 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms