RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 GTF3C6Q969F1 213 aa13.85□□□□□ -0.19
SMARCA1-201ENST00000371121 TRERF1Q96PN7 1200 aa13.85□□□□□ -0.19
SMARCA1-201ENST00000371121 TFIP11Q9UBB9 837 aaKnown RBP13.85□□□□□ -0.19
SMARCA1-201ENST00000371121 CLCN6P51797 869 aa13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 E4F1Q66K89 784 aaPredicted RBP13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 LEO1Q8WVC0 666 aaPredicted RBP13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 CEP170BQ9Y4F5 1589 aaPredicted RBP13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 VPS37CA5D8V6 355 aaPredicted RBP13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 GNAI3P08754 354 aa13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 RAD51AP2Q09MP3 1159 aa13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 LAMA4Q16363 1823 aa13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 ZNF165P49910 485 aa13.83□□□□□ -0.19
SMARCA1-201ENST00000371121 ERO1AQ96HE7 468 aa13.83□□□□□ -0.19
SMARCA1-201ENST00000371121 TNMDQ9H2S6 317 aa13.83□□□□□ -0.19
SMARCA1-201ENST00000371121 TRMT1Q9NXH9 659 aaKnown RBP13.83□□□□□ -0.19
SMARCA1-201ENST00000371121 ADD1P35611 737 aaKnown RBP13.83□□□□□ -0.2
SMARCA1-201ENST00000371121 ST5P78524 1137 aa13.83□□□□□ -0.2
SMARCA1-201ENST00000371121 LCMT1Q9UIC8 334 aa13.83□□□□□ -0.2
SMARCA1-201ENST00000371121 NEDD4P46934 1319 aa13.83□□□□□ -0.2
SMARCA1-201ENST00000371121 FLIIQ13045 1269 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 TOB2Q14106 344 aaPredicted RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 LARP1Q6PKG0 1096 aaKnown RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 PXDNLA1KZ92 1463 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 USP42Q9H9J4 1324 aaKnown RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 SASH3O75995 380 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 PNMA6AP0CW24 399 aaPredicted RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 SKILP12757 684 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 GOLPH3LQ9H4A5 285 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 ATG3Q9NT62 314 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 ATP6V1DQ9Y5K8 247 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 SNW1Q13573 536 aaKnown RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 PRPF40BQ6NWY9 871 aaKnown RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 MRFAP1L1Q96HT8 127 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 JAKMIP1Q96N16 626 aaKnown RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 PDRG1Q9NUG6 133 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 NPHP1O15259 732 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 MTHFSDQ2M296 383 aaKnown RBP13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 TCEANC2Q96MN5 208 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 TOPAZ1Q8N9V7 1692 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 HSP90AB2PQ58FF8 381 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 MAP3K19Q56UN5 1328 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 RHPN1Q8TCX5 695 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 FTOQ9C0B1 505 aaKnown RBP eCLIP13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 ABCC6O95255 1503 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 OVOS2A0A0J9YW53 1432 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 OVOS2Q6IE36 1432 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 COL15A1P39059 1388 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 CCDC69A6NI79 296 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 PTPN14Q15678 1187 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 CERS3Q8IU89 383 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 DRC7Q8IY82 874 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 TM6SF1Q9BZW5 370 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 CCDC66A2RUB6 948 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 KRT85P78386 507 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 ARMCX5Q6P1M9 558 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 PPP1R42Q7Z4L9 355 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 NEK11Q8NG66 645 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 ERCC4Q92889 916 aaPredicted RBP13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 TRIM34Q9BYJ4 488 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 NPHP3Q7Z494 1330 aa13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 PRR36Q9H6K5 1346 aa13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 SLU7O95391 586 aaKnown RBP13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 LARP1BQ659C4 914 aaKnown RBP13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 DNAJC2Q99543 621 aaKnown RBP13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 ZCCHC17Q9NP64 241 aaKnown RBP13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 NBPF7P0C2Y1 421 aaPredicted RBP13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 NECTIN2Q92692 538 aa13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 PDIA4P13667 645 aaKnown RBP13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 RESTQ13127 1097 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 REXO1L1PQ8IX06 675 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 ZBTB9Q96C00 473 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 PPP1R13BQ96KQ4 1090 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 NOL10Q9BSC4 688 aaKnown RBP13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 EPC1Q9H2F5 836 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 MAP3K5Q99683 1374 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 RICTORQ6R327 1708 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 SMARCE1Q969G3 411 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 DDX11Q96FC9 970 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 NWD1Q149M9 1564 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 PHAXQ9H814 394 aaKnown RBP13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 JAK2O60674 1132 aa13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 SPATA32Q96LK8 384 aa13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 FAM227BQ96M60 508 aa13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 SH2B1Q9NRF2 756 aaPredicted RBP13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 MARF1Q9Y4F3 1742 aaKnown RBP13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 JCADQ9P266 1359 aa13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 SEC31AO94979 1220 aaKnown RBP13.77□□□□□ -0.21
SMARCA1-201ENST00000371121 CHMP4AQ9BY43 222 aa13.77□□□□□ -0.21
SMARCA1-201ENST00000371121 DDX19AQ9NUU7 478 aaKnown RBP13.77□□□□□ -0.21
SMARCA1-201ENST00000371121 CALCOCO1Q9P1Z2 691 aa13.77□□□□□ -0.21
SMARCA1-201ENST00000371121 TRIM65Q6PJ69 517 aa13.77□□□□□ -0.21
SMARCA1-201ENST00000371121 CREB3L3Q68CJ9 461 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 ENGASEQ8NFI3 743 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 HSD3B7Q9H2F3 369 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 TRIM66O15016 1216 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 FAM193AP78312 1265 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 TSGA10IPQ3SY00 556 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 FBXO31Q5XUX0 539 aaPredicted RBP13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 MAP4K1Q92918 833 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 SNRKQ9NRH2 765 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms