RNA–Protein interactions for RNA: ENST00000368841.6

SNX27-202, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best)

Gene SNX27, Length 7,070 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-202ENST00000368841 DAPK1P53355 1430 aa20.9■□□□□ 0.94
SNX27-202ENST00000368841 SBNO2Q9Y2G9 1366 aa20.9■□□□□ 0.94
SNX27-202ENST00000368841 SUPT6HQ7KZ85 1726 aaKnown RBP20.9■□□□□ 0.94
SNX27-202ENST00000368841 LIMCH1Q9UPQ0 1083 aa20.89■□□□□ 0.94
SNX27-202ENST00000368841 SYNCQ9H7C4 482 aa20.89■□□□□ 0.94
SNX27-202ENST00000368841 APBB1IPQ7Z5R6 666 aaPredicted RBP20.89■□□□□ 0.93
SNX27-202ENST00000368841 ZBTB21Q9ULJ3 1066 aa20.89■□□□□ 0.93
SNX27-202ENST00000368841 STX8Q9UNK0 236 aa20.89■□□□□ 0.93
SNX27-202ENST00000368841 GRIN2BQ13224 1484 aa20.89■□□□□ 0.93
SNX27-202ENST00000368841 FGFR1OPO95684 399 aaKnown RBP20.89■□□□□ 0.93
SNX27-202ENST00000368841 PAFAH1B1P43034 410 aa20.89■□□□□ 0.93
SNX27-202ENST00000368841 ARID5AQ03989 594 aa20.89■□□□□ 0.93
SNX27-202ENST00000368841 HFM1A2PYH4 1435 aa20.89■□□□□ 0.93
SNX27-202ENST00000368841 GIMAP6Q6P9H5 292 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 CLEC11AQ9Y240 323 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 WDHD1O75717 1129 aaPredicted RBP20.88■□□□□ 0.93
SNX27-202ENST00000368841 IARSP41252 1262 aaKnown RBP20.88■□□□□ 0.93
SNX27-202ENST00000368841 PHAXQ9H814 394 aaKnown RBP20.88■□□□□ 0.93
SNX27-202ENST00000368841 SLC52A1Q9NWF4 448 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 MAP9Q49MG5 647 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 CWC25Q9NXE8 425 aaPredicted RBP20.88■□□□□ 0.93
SNX27-202ENST00000368841 PTGS1P23219 599 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 TCP11L1Q9NUJ3 509 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 HECW1Q76N89 1606 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 TSPY3P0CV98 308 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 TSPY8P0CW00 308 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 TBC1D9Q6ZT07 1266 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 AMOTL2Q9Y2J4 779 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 OTUD6BQ8N6M0 293 aa20.88■□□□□ 0.93
SNX27-202ENST00000368841 SNAPC4Q5SXM2 1469 aa20.87■□□□□ 0.93
SNX27-202ENST00000368841 CHST3Q7LGC8 479 aa20.87■□□□□ 0.93
SNX27-202ENST00000368841 FLIIQ13045 1269 aa20.87■□□□□ 0.93
SNX27-202ENST00000368841 ALS2CR12Q96Q35 445 aa20.87■□□□□ 0.93
SNX27-202ENST00000368841 HYPKQ9NX55 129 aa20.87■□□□□ 0.93
SNX27-202ENST00000368841 CABP5Q9NP86 173 aa20.87■□□□□ 0.93
SNX27-202ENST00000368841 EXOC1Q9NV70 894 aa20.87■□□□□ 0.93
SNX27-202ENST00000368841 KRT28Q7Z3Y7 464 aa20.87■□□□□ 0.93
SNX27-202ENST00000368841 ZSCAN30Q86W11 494 aa20.87■□□□□ 0.93
SNX27-202ENST00000368841 GPATCH11Q8N954 259 aa20.87■□□□□ 0.93
SNX27-202ENST00000368841 RNF41Q9H4P4 317 aaPredicted RBP20.87■□□□□ 0.93
SNX27-202ENST00000368841 ORC3Q9UBD5 711 aaPredicted RBP20.87■□□□□ 0.93
SNX27-202ENST00000368841 CALM1P0DP23 149 aa20.86■□□□□ 0.93
SNX27-202ENST00000368841 CALM2P0DP24 149 aa20.86■□□□□ 0.93
SNX27-202ENST00000368841 CALM3P0DP25 149 aa20.86■□□□□ 0.93
SNX27-202ENST00000368841 EVI5LQ96CN4 794 aa20.86■□□□□ 0.93
SNX27-202ENST00000368841 TRIM47Q96LD4 638 aa20.86■□□□□ 0.93
SNX27-202ENST00000368841 SCAND2PQ9GZW5 306 aaPredicted RBP20.86■□□□□ 0.93
SNX27-202ENST00000368841 TBC1D2Q9BYX2 928 aa20.86■□□□□ 0.93
SNX27-202ENST00000368841 STX1AQ16623 288 aa20.86■□□□□ 0.93
SNX27-202ENST00000368841 TRIM27P14373 513 aa20.86■□□□□ 0.93
SNX27-202ENST00000368841 MRVI1Q9Y6F6 885 aa20.86■□□□□ 0.93
SNX27-202ENST00000368841 HMGB1P09429 215 aaKnown RBP20.85■□□□□ 0.93
SNX27-202ENST00000368841 RRAGBQ5VZM2 374 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 SH2B1Q9NRF2 756 aaPredicted RBP20.85■□□□□ 0.93
SNX27-202ENST00000368841 ARHGEF11O15085 1522 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 STX6O43752 255 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 PDE4BQ07343 736 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 PPP1R42Q7Z4L9 355 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 SLF2Q8IX21 1173 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 IPO4Q8TEX9 1081 aaKnown RBP20.85■□□□□ 0.93
SNX27-202ENST00000368841 PHF8Q9UPP1 1060 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 PPP4R3BQ5MIZ7 849 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 GBP3Q9H0R5 595 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 CIZ1Q9ULV3 898 aaPredicted RBP20.85■□□□□ 0.93
SNX27-202ENST00000368841 NKTRP30414 1462 aaKnown RBP20.85■□□□□ 0.93
SNX27-202ENST00000368841 PI4KAP2A4QPH2 592 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 ST5P78524 1137 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 SLC39A6Q13433 755 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 PI4KAP1Q8N8J0 262 aa20.85■□□□□ 0.93
SNX27-202ENST00000368841 MARCKSP29966 332 aaPredicted RBP20.84■□□□□ 0.93
SNX27-202ENST00000368841 SP4Q02446 784 aa20.84■□□□□ 0.93
SNX27-202ENST00000368841 CCDC12Q8WUD4 166 aaPredicted RBP20.84■□□□□ 0.93
SNX27-202ENST00000368841 NEK1Q96PY6 1258 aa20.84■□□□□ 0.93
SNX27-202ENST00000368841 PLIN2Q99541 437 aa20.84■□□□□ 0.93
SNX27-202ENST00000368841 SLC4A4Q9Y6R1 1079 aa20.84■□□□□ 0.93
SNX27-202ENST00000368841 NBPF6Q5VWK0 638 aa20.84■□□□□ 0.93
SNX27-202ENST00000368841 NBPF5PQ86XG9 351 aaPredicted RBP20.84■□□□□ 0.93
SNX27-202ENST00000368841 NBPF4Q96M43 638 aa20.84■□□□□ 0.93
SNX27-202ENST00000368841 HLA-DOAP06340 250 aa20.84■□□□□ 0.93
SNX27-202ENST00000368841 PPP1R14CQ8TAE6 165 aa20.84■□□□□ 0.93
SNX27-202ENST00000368841 CNPY2Q9Y2B0 182 aa20.84■□□□□ 0.93
SNX27-202ENST00000368841 SNW1Q13573 536 aaKnown RBP20.83■□□□□ 0.93
SNX27-202ENST00000368841 AMOTQ4VCS5 1084 aa20.83■□□□□ 0.93
SNX27-202ENST00000368841 RIMBP2O15034 1052 aa20.83■□□□□ 0.92
SNX27-202ENST00000368841 TBCAO75347 108 aaKnown RBP20.83■□□□□ 0.92
SNX27-202ENST00000368841 CYP7A1P22680 504 aa20.83■□□□□ 0.92
SNX27-202ENST00000368841 IFIT1BQ5T764 474 aaKnown RBP20.83■□□□□ 0.92
SNX27-202ENST00000368841 CHPF2Q9P2E5 772 aa20.83■□□□□ 0.92
SNX27-202ENST00000368841 VEZTQ9HBM0 779 aa20.83■□□□□ 0.92
SNX27-202ENST00000368841 A0A1W2PRG0 241 aa20.82■□□□□ 0.92
SNX27-202ENST00000368841 UBA7P41226 1012 aa20.82■□□□□ 0.92
SNX27-202ENST00000368841 KLF18A0A0U1RQI7 1052 aa20.82■□□□□ 0.92
SNX27-202ENST00000368841 MBIPQ9NS73 344 aa20.82■□□□□ 0.92
SNX27-202ENST00000368841 PABPN1LA6NDY0 278 aaKnown RBP20.82■□□□□ 0.92
SNX27-202ENST00000368841 SMIM23A6NLE4 172 aa20.82■□□□□ 0.92
SNX27-202ENST00000368841 ANKRD24Q8TF21 1146 aa20.82■□□□□ 0.92
SNX27-202ENST00000368841 FAM170AA1A519 330 aa20.82■□□□□ 0.92
SNX27-202ENST00000368841 GRIPAP1Q4V328 841 aa20.82■□□□□ 0.92
SNX27-202ENST00000368841 DBF4Q9UBU7 674 aaPredicted RBP20.82■□□□□ 0.92
SNX27-202ENST00000368841 PHACTR2O75167 634 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 1230.4 ms