RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 EIF6P56537 245 aaKnown RBP18.47■□□□□ 0.55
VPS29-201ENST00000360579 MCM10Q7L590 875 aa18.47■□□□□ 0.55
VPS29-201ENST00000360579 ABT1Q9ULW3 272 aaKnown RBP18.47■□□□□ 0.55
VPS29-201ENST00000360579 LMOD1P29536 600 aaPredicted RBP18.46■□□□□ 0.55
VPS29-201ENST00000360579 CRY2Q49AN0 593 aa18.46■□□□□ 0.55
VPS29-201ENST00000360579 WDR33Q9C0J8 1336 aaKnown RBP18.46■□□□□ 0.55
VPS29-201ENST00000360579 U2AF1L5P0DN76 240 aaPredicted RBP18.44■□□□□ 0.54
VPS29-201ENST00000360579 HSPA8P11142 646 aaKnown RBP18.44■□□□□ 0.54
VPS29-201ENST00000360579 U2AF1Q01081 240 aaKnown RBP eCLIP18.44■□□□□ 0.54
VPS29-201ENST00000360579 HLFQ16534 295 aa18.44■□□□□ 0.54
VPS29-201ENST00000360579 DDX21Q9NR30 783 aaKnown RBP eCLIP18.44■□□□□ 0.54
VPS29-201ENST00000360579 SNED1Q8TER0 1413 aa18.43■□□□□ 0.54
VPS29-201ENST00000360579 ERVV-1B6SEH8 477 aa18.43■□□□□ 0.54
VPS29-201ENST00000360579 ECE1P42892 770 aa18.43■□□□□ 0.54
VPS29-201ENST00000360579 TAF7Q15545 349 aaPredicted RBP18.43■□□□□ 0.54
VPS29-201ENST00000360579 RPGRQ92834 1020 aaKnown RBP18.43■□□□□ 0.54
VPS29-201ENST00000360579 GJA3Q9Y6H8 435 aa18.43■□□□□ 0.54
VPS29-201ENST00000360579 HOXA10P31260 410 aaPredicted RBP18.42■□□□□ 0.54
VPS29-201ENST00000360579 ABHD8Q96I13 439 aa18.42■□□□□ 0.54
VPS29-201ENST00000360579 BEGAINQ9BUH8 593 aa18.42■□□□□ 0.54
VPS29-201ENST00000360579 IBTKQ9P2D0 1353 aaPredicted RBP18.42■□□□□ 0.54
VPS29-201ENST00000360579 RIC1Q4ADV7 1423 aa18.41■□□□□ 0.54
VPS29-201ENST00000360579 USP50Q70EL3 339 aaPredicted RBP18.41■□□□□ 0.54
VPS29-201ENST00000360579 LARGE2Q8N3Y3 721 aa18.41■□□□□ 0.54
VPS29-201ENST00000360579 ABCC12Q96J65 1359 aa18.41■□□□□ 0.54
VPS29-201ENST00000360579 DCTN1Q14203 1278 aa18.4■□□□□ 0.54
VPS29-201ENST00000360579 KIF6Q6ZMV9 814 aa18.4■□□□□ 0.54
VPS29-201ENST00000360579 NUTM1Q86Y26 1132 aa18.4■□□□□ 0.54
VPS29-201ENST00000360579 PNISRQ8TF01 805 aaKnown RBP18.4■□□□□ 0.54
VPS29-201ENST00000360579 RBM17Q96I25 401 aaKnown RBP18.4■□□□□ 0.54
VPS29-201ENST00000360579 MAP3K15Q6ZN16 1313 aa18.4■□□□□ 0.54
VPS29-201ENST00000360579 SCNN1DP51172 638 aa18.39■□□□□ 0.53
VPS29-201ENST00000360579 PAXIP1Q6ZW49 1069 aaPredicted RBP18.39■□□□□ 0.53
VPS29-201ENST00000360579 CAPNS2Q96L46 248 aa18.39■□□□□ 0.53
VPS29-201ENST00000360579 CRAMP1Q96RY5 1269 aa18.39■□□□□ 0.53
VPS29-201ENST00000360579 TMX4Q9H1E5 349 aaPredicted RBP18.39■□□□□ 0.53
VPS29-201ENST00000360579 SPINK5Q9NQ38 1064 aaPredicted RBP18.39■□□□□ 0.53
VPS29-201ENST00000360579 NEFMP07197 916 aa18.38■□□□□ 0.53
VPS29-201ENST00000360579 NIM1KQ8IY84 436 aa18.38■□□□□ 0.53
VPS29-201ENST00000360579 NGEFQ8N5V2 710 aa18.38■□□□□ 0.53
VPS29-201ENST00000360579 PPEF1O14829 653 aaPredicted RBP18.37■□□□□ 0.53
VPS29-201ENST00000360579 EPS15P42566 896 aa18.37■□□□□ 0.53
VPS29-201ENST00000360579 GPR101Q96P66 508 aaPredicted RBP18.37■□□□□ 0.53
VPS29-201ENST00000360579 VPS33BQ9H267 617 aa18.37■□□□□ 0.53
VPS29-201ENST00000360579 LAMB4A4D0S4 1761 aa18.36■□□□□ 0.53
VPS29-201ENST00000360579 PPP2R1AP30153 589 aa18.36■□□□□ 0.53
VPS29-201ENST00000360579 THSD7BQ9C0I4 1608 aa18.36■□□□□ 0.53
VPS29-201ENST00000360579 MIS18AQ9NYP9 233 aa18.36■□□□□ 0.53
VPS29-201ENST00000360579 COL4A5P29400 1685 aa18.35■□□□□ 0.53
VPS29-201ENST00000360579 MAP2K2P36507 400 aa18.35■□□□□ 0.53
VPS29-201ENST00000360579 ADARB2Q9NS39 739 aaKnown RBP18.35■□□□□ 0.53
VPS29-201ENST00000360579 RRP7AQ9Y3A4 280 aaKnown RBP18.35■□□□□ 0.53
VPS29-201ENST00000360579 TLL2Q9Y6L7 1015 aa18.35■□□□□ 0.53
VPS29-201ENST00000360579 UBN2Q6ZU65 1347 aa18.34■□□□□ 0.53
VPS29-201ENST00000360579 PPIP5K2O43314 1243 aa18.34■□□□□ 0.53
VPS29-201ENST00000360579 GPTP24298 496 aa18.34■□□□□ 0.53
VPS29-201ENST00000360579 GRM1Q13255 1194 aa18.34■□□□□ 0.53
VPS29-201ENST00000360579 FAM161AQ3B820 660 aa18.34■□□□□ 0.53
VPS29-201ENST00000360579 SUSD4Q5VX71 490 aa18.34■□□□□ 0.53
VPS29-201ENST00000360579 CYP4F22Q6NT55 531 aa18.34■□□□□ 0.53
VPS29-201ENST00000360579 TTLL7Q6ZT98 887 aa18.34■□□□□ 0.53
VPS29-201ENST00000360579 PPP1R42Q7Z4L9 355 aa18.34■□□□□ 0.53
VPS29-201ENST00000360579 LTBP1Q14766 1721 aa18.34■□□□□ 0.53
VPS29-201ENST00000360579 ERBB4Q15303 1308 aa18.33■□□□□ 0.53
VPS29-201ENST00000360579 CA12O43570 354 aa18.33■□□□□ 0.52
VPS29-201ENST00000360579 SLC34A2O95436 690 aa18.33■□□□□ 0.52
VPS29-201ENST00000360579 MYL6BP14649 208 aa18.33■□□□□ 0.52
VPS29-201ENST00000360579 PARP10Q53GL7 1025 aa18.33■□□□□ 0.52
VPS29-201ENST00000360579 CST9Q5W186 159 aa18.33■□□□□ 0.52
VPS29-201ENST00000360579 ZNF34Q8IZ26 560 aa18.33■□□□□ 0.52
VPS29-201ENST00000360579 SUPT20HQ8NEM7 779 aa18.33■□□□□ 0.52
VPS29-201ENST00000360579 NLRP3Q96P20 1036 aa18.33■□□□□ 0.52
VPS29-201ENST00000360579 ZBTB3Q9H5J0 574 aa18.33■□□□□ 0.52
VPS29-201ENST00000360579 GPRC5DQ9NZD1 345 aa18.33■□□□□ 0.52
VPS29-201ENST00000360579 TCERG1O14776 1098 aaKnown RBP18.32■□□□□ 0.52
VPS29-201ENST00000360579 NTSR2O95665 410 aa18.32■□□□□ 0.52
VPS29-201ENST00000360579 EIF4A1P60842 406 aaKnown RBP18.32■□□□□ 0.52
VPS29-201ENST00000360579 GIGYF2Q6Y7W6 1299 aaKnown RBP18.32■□□□□ 0.52
VPS29-201ENST00000360579 ATP6V0A2Q9Y487 856 aa18.32■□□□□ 0.52
VPS29-201ENST00000360579 CCDC85CA6NKD9 419 aa18.31■□□□□ 0.52
VPS29-201ENST00000360579 TRAF5O00463 557 aa18.31■□□□□ 0.52
VPS29-201ENST00000360579 MLLT1Q03111 559 aaPredicted RBP18.31■□□□□ 0.52
VPS29-201ENST00000360579 FMR1Q06787 632 aaKnown RBP eCLIP18.31■□□□□ 0.52
VPS29-201ENST00000360579 HHIPL1Q96JK4 782 aa18.31■□□□□ 0.52
VPS29-201ENST00000360579 ZNRF3Q9ULT6 936 aa18.31■□□□□ 0.52
VPS29-201ENST00000360579 NUP98P52948 1817 aa18.3■□□□□ 0.52
VPS29-201ENST00000360579 CDHR2Q9BYE9 1310 aa18.3■□□□□ 0.52
VPS29-201ENST00000360579 AOC3Q16853 763 aa18.3■□□□□ 0.52
VPS29-201ENST00000360579 SAPCD2Q86UD0 394 aa18.3■□□□□ 0.52
VPS29-201ENST00000360579 CELF2O95319 508 aaKnown RBP18.29■□□□□ 0.52
VPS29-201ENST00000360579 RGS19P49795 217 aa18.29■□□□□ 0.52
VPS29-201ENST00000360579 ZC3H15Q8WU90 426 aaKnown RBP18.29■□□□□ 0.52
VPS29-201ENST00000360579 RTFDC1Q9BY42 306 aaPredicted RBP18.29■□□□□ 0.52
VPS29-201ENST00000360579 KDM3BQ7LBC6 1761 aa18.28■□□□□ 0.52
VPS29-201ENST00000360579 BBOX1O75936 387 aa18.28■□□□□ 0.52
VPS29-201ENST00000360579 CXCL9Q07325 125 aa18.28■□□□□ 0.52
VPS29-201ENST00000360579 SLC10A5Q5PT55 438 aa18.28■□□□□ 0.52
VPS29-201ENST00000360579 C3orf67Q6ZVT6 689 aa18.28■□□□□ 0.52
VPS29-201ENST00000360579 UTP14AQ9BVJ6 771 aaKnown RBP18.28■□□□□ 0.52
VPS29-201ENST00000360579 TRPM7Q96QT4 1865 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms