RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 PKD2L1Q9P0L9 805 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 FAM169AQ9Y6X4 670 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 C4orf50Q6ZRC1 276 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 MKRN1Q9UHC7 482 aaKnown RBP11.19□□□□□ -0.62
CHD3-202ENST00000358181 PPFIA3O75145 1194 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 LARP6Q9BRS8 491 aaKnown RBP11.19□□□□□ -0.62
CHD3-202ENST00000358181 ATP6V1E1P36543 226 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 TSTA3Q13630 321 aaPredicted RBP11.18□□□□□ -0.62
CHD3-202ENST00000358181 ANKLE2Q86XL3 938 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 NAPBQ9H115 298 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 GNAI3P08754 354 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 CFAP157Q5JU67 520 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 GSDMBQ8TAX9 411 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 FAM200AQ8TCP9 573 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 CCDC194A0A1B0GVG4 234 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 SPDYE16A6NNV3 312 aaPredicted RBP11.18□□□□□ -0.62
CHD3-202ENST00000358181 KRT13P13646 458 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 SPDYE2Q495Y8 402 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 CTCFLQ8NI51 663 aaPredicted RBP11.18□□□□□ -0.62
CHD3-202ENST00000358181 SNAPC4Q5SXM2 1469 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 GAS8O95995 478 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 ANKRD1Q15327 319 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 KIF4BQ2VIQ3 1234 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 EAPPQ56P03 285 aaPredicted RBP11.18□□□□□ -0.62
CHD3-202ENST00000358181 CHMP6Q96FZ7 201 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 CALML4Q96GE6 196 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 PANK2Q9BZ23 570 aa11.18□□□□□ -0.62
CHD3-202ENST00000358181 CGNQ9P2M7 1197 aaKnown RBP11.18□□□□□ -0.62
CHD3-202ENST00000358181 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 PSMD6Q15008 389 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 UAP1Q16222 522 aaPredicted RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 RAB34Q9BZG1 259 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 PPANQ9NQ55 473 aaKnown RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 DYNC1I1O14576 645 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 ABL1P00519 1130 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 HLA-DOAP06340 250 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 PLCB3Q01970 1234 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 LRRC43Q8N309 656 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 TBC1D5Q92609 795 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 TXNDC16Q9P2K2 825 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 FEZ2Q9UHY8 353 aaPredicted RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 POLD1P28340 1107 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 FBXO31Q5XUX0 539 aaPredicted RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 MRRFQ96E11 262 aaKnown RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 TTC21AQ8NDW8 1320 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 TBCAO75347 108 aaKnown RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 FCHSD2O94868 740 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 MYD88Q99836 296 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 SYNJ2O15056 1496 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 C9orf84Q5VXU9 1444 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 RRBP1Q9P2E9 1410 aaKnown RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 SMTNL1A8MU46 457 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 MAK16Q9BXY0 300 aaKnown RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 SRGAP3O43295 1099 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 FAM13AO94988 1023 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 SSRP1Q08945 709 aaKnown RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 SLF2Q8IX21 1173 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 TRIM6Q9C030 488 aaPredicted RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 CWC25Q9NXE8 425 aaPredicted RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 DNAJC5BQ9UF47 199 aa11.17□□□□□ -0.62
CHD3-202ENST00000358181 TRMT112Q9UI30 125 aaKnown RBP11.17□□□□□ -0.62
CHD3-202ENST00000358181 FGFR1OPO95684 399 aaKnown RBP11.16□□□□□ -0.62
CHD3-202ENST00000358181 IFIT1P09914 478 aaKnown RBP11.16□□□□□ -0.62
CHD3-202ENST00000358181 FNDC3AQ9Y2H6 1198 aaKnown RBP11.16□□□□□ -0.62
CHD3-202ENST00000358181 TTLL3Q9Y4R7 772 aa11.16□□□□□ -0.62
CHD3-202ENST00000358181 CDK13Q14004 1512 aaKnown RBP11.16□□□□□ -0.62
CHD3-202ENST00000358181 FYCO1Q9BQS8 1478 aa11.16□□□□□ -0.62
CHD3-202ENST00000358181 SFMBT1Q9UHJ3 866 aa11.16□□□□□ -0.62
CHD3-202ENST00000358181 SLC12A7Q9Y666 1083 aa11.16□□□□□ -0.62
CHD3-202ENST00000358181 RRP9O43818 475 aaKnown RBP11.16□□□□□ -0.62
CHD3-202ENST00000358181 BLOC1S2Q6QNY1 142 aa11.16□□□□□ -0.62
CHD3-202ENST00000358181 ACSBG1Q96GR2 724 aa11.16□□□□□ -0.62
CHD3-202ENST00000358181 HDAC9Q9UKV0 1011 aa11.16□□□□□ -0.62
CHD3-202ENST00000358181 FOXO3O43524 673 aa11.16□□□□□ -0.62
CHD3-202ENST00000358181 GPHNQ9NQX3 736 aaPredicted RBP11.16□□□□□ -0.62
CHD3-202ENST00000358181 CASTP20810 708 aaKnown RBP11.16□□□□□ -0.62
CHD3-202ENST00000358181 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.16□□□□□ -0.62
CHD3-202ENST00000358181 USO1O60763 962 aaKnown RBP11.15□□□□□ -0.62
CHD3-202ENST00000358181 CCDC14Q49A88 953 aa11.15□□□□□ -0.62
CHD3-202ENST00000358181 CTNNA3Q9UI47 895 aa11.15□□□□□ -0.62
CHD3-202ENST00000358181 SLC5A1P13866 664 aa11.15□□□□□ -0.62
CHD3-202ENST00000358181 KRT85P78386 507 aa11.15□□□□□ -0.62
CHD3-202ENST00000358181 EXOC6BQ9Y2D4 811 aa11.15□□□□□ -0.62
CHD3-202ENST00000358181 STXBP4Q6ZWJ1 553 aa11.15□□□□□ -0.62
CHD3-202ENST00000358181 ARAP1Q96P48 1450 aa11.15□□□□□ -0.62
CHD3-202ENST00000358181 RIMBP2O15034 1052 aa11.15□□□□□ -0.62
CHD3-202ENST00000358181 NUDT16Q96DE0 195 aaKnown RBP11.15□□□□□ -0.62
CHD3-202ENST00000358181 PAFAH1B1P43034 410 aa11.15□□□□□ -0.63
CHD3-202ENST00000358181 WHAMMQ8TF30 809 aa11.15□□□□□ -0.63
CHD3-202ENST00000358181 KAT14Q9H8E8 782 aa11.15□□□□□ -0.63
CHD3-202ENST00000358181 SYNJ1O43426 1573 aa11.15□□□□□ -0.63
CHD3-202ENST00000358181 KRT9P35527 623 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 KIAA0753Q2KHM9 967 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 A0A087WZG4 1122 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 F6X3S4 739 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 SARNPP82979 210 aaKnown RBP11.14□□□□□ -0.63
CHD3-202ENST00000358181 CTR9Q6PD62 1173 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 WDR63Q8IWG1 891 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 JADE2Q9NQC1 790 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 GRIN2BQ13224 1484 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 639.1 ms