RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ARAP1Q96P48 1450 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 TSPY2A6NKD2 308 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 PTCD1O75127 700 aaKnown RBP7.42□□□□□ -1.22
UPF2-201ENST00000356352 UBA7P41226 1012 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 LMAN1P49257 510 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 METAP2P50579 478 aaKnown RBP eCLIP7.42□□□□□ -1.22
UPF2-201ENST00000356352 HLTFQ14527 1009 aaKnown RBP eCLIP7.42□□□□□ -1.22
UPF2-201ENST00000356352 TCERG1LQ5VWI1 586 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 CTR9Q6PD62 1173 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 CCDC155Q8N6L0 562 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 STMN4Q9H169 189 aaPredicted RBP7.42□□□□□ -1.22
UPF2-201ENST00000356352 CNNM2Q9H8M5 875 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 DMRT2Q9Y5R5 561 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 ZFYP08048 801 aaPredicted RBP7.41□□□□□ -1.22
UPF2-201ENST00000356352 CHMP4BP1P59074 171 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 CCDC102BQ68D86 513 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 NSRP1Q9H0G5 558 aaKnown RBP7.41□□□□□ -1.22
UPF2-201ENST00000356352 BCCIPQ9P287 314 aaKnown RBP eCLIP7.41□□□□□ -1.22
UPF2-201ENST00000356352 GNAQP50148 359 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 IFNL2Q8IZJ0 200 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 HDAC9Q9UKV0 1011 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 ERICH4A6NGS2 130 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 TUBB4AP04350 444 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 RARSP54136 660 aaKnown RBP7.41□□□□□ -1.22
UPF2-201ENST00000356352 SPAG1Q07617 926 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 KIAA0753Q2KHM9 967 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 NBPF8Q3BBV2 869 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 BICD1Q96G01 975 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 NCOA1Q15788 1441 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 C6orf229H3BNL8 230 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 TNNT1P13805 278 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 CCDC152Q4G0S7 254 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 USP16Q9Y5T5 823 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 IL16Q14005 1332 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 HSF2BPO75031 334 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 KRT13P13646 458 aa7.41□□□□□ -1.22
UPF2-201ENST00000356352 XPCQ01831 940 aaPredicted RBP7.41□□□□□ -1.22
UPF2-201ENST00000356352 RNF187Q5TA31 235 aaPredicted RBP7.41□□□□□ -1.22
UPF2-201ENST00000356352 CCDC171Q6TFL3 1326 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 GJB2P29033 226 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 PPP1R14CQ8TAE6 165 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 CCDC8Q9H0W5 538 aaPredicted RBP7.4□□□□□ -1.22
UPF2-201ENST00000356352 RBM27Q9P2N5 1060 aaKnown RBP7.4□□□□□ -1.22
UPF2-201ENST00000356352 PAXBP1Q9Y5B6 917 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 SMARCA5O60264 1052 aaPredicted RBP7.4□□□□□ -1.22
UPF2-201ENST00000356352 LIG1P18858 919 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 CYLC1P35663 651 aaPredicted RBP7.4□□□□□ -1.22
UPF2-201ENST00000356352 NOP2P46087 812 aaKnown RBP7.4□□□□□ -1.22
UPF2-201ENST00000356352 MPRIPQ6WCQ1 1025 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 PAXIP1Q6ZW49 1069 aaPredicted RBP7.4□□□□□ -1.22
UPF2-201ENST00000356352 TMC6Q7Z403 805 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 MPNDQ8N594 471 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 NEK1Q96PY6 1258 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 SELENOOQ9BVL4 669 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 SAMM50Q9Y512 469 aa7.4□□□□□ -1.22
UPF2-201ENST00000356352 IDEP14735 1019 aa7.4□□□□□ -1.23
UPF2-201ENST00000356352 SNW1Q13573 536 aaKnown RBP7.4□□□□□ -1.23
UPF2-201ENST00000356352 MAATS1Q7Z4T9 603 aa7.4□□□□□ -1.23
UPF2-201ENST00000356352 CFAP57Q96MR6 1250 aa7.4□□□□□ -1.23
UPF2-201ENST00000356352 DDX23Q9BUQ8 820 aaKnown RBP7.4□□□□□ -1.23
UPF2-201ENST00000356352 FLIIQ13045 1269 aa7.4□□□□□ -1.23
UPF2-201ENST00000356352 FMNL3Q8IVF7 1028 aa7.4□□□□□ -1.23
UPF2-201ENST00000356352 LMBR1Q8WVP7 490 aa7.4□□□□□ -1.23
UPF2-201ENST00000356352 SSH1Q8WYL5 1049 aa7.4□□□□□ -1.23
UPF2-201ENST00000356352 CCDC77Q9BR77 488 aa7.4□□□□□ -1.23
UPF2-201ENST00000356352 WASLO00401 505 aaPredicted RBP7.39□□□□□ -1.23
UPF2-201ENST00000356352 UBE2HP62256 183 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 TRIM47Q96LD4 638 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 SYNCQ9H7C4 482 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.39□□□□□ -1.23
UPF2-201ENST00000356352 PUF60Q9UHX1 559 aaKnown RBP7.39□□□□□ -1.23
UPF2-201ENST00000356352 V9GYY5 206 aaPredicted RBP7.39□□□□□ -1.23
UPF2-201ENST00000356352 TUBB4BP68371 445 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 PRPF4BQ13523 1007 aaKnown RBP7.39□□□□□ -1.23
UPF2-201ENST00000356352 MIS18AQ9NYP9 233 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 ORC3Q9UBD5 711 aaPredicted RBP7.39□□□□□ -1.23
UPF2-201ENST00000356352 MAP3K2Q9Y2U5 619 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 TOP2BQ02880 1626 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 NAIPQ13075 1403 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 GUCY1B3Q02153 619 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 LDHAL6AQ6ZMR3 332 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 MSANTD4Q8NCY6 345 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 CPLX3Q8WVH0 158 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 IQCGQ9H095 443 aaKnown RBP7.39□□□□□ -1.23
UPF2-201ENST00000356352 ANKRD36BQ8N2N9 1353 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 KIAA0586Q9BVV6 1533 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 MAGI1Q96QZ7 1491 aaPredicted RBP7.39□□□□□ -1.23
UPF2-201ENST00000356352 ATP2A1O14983 1001 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 RAB3IL1Q8TBN0 382 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 KCNG4Q8TDN1 519 aa7.39□□□□□ -1.23
UPF2-201ENST00000356352 RAPGEF3O95398 923 aa7.38□□□□□ -1.23
UPF2-201ENST00000356352 SNRPA1P09661 255 aaKnown RBP7.38□□□□□ -1.23
UPF2-201ENST00000356352 CALM1P0DP23 149 aa7.38□□□□□ -1.23
UPF2-201ENST00000356352 CALM2P0DP24 149 aa7.38□□□□□ -1.23
UPF2-201ENST00000356352 CALM3P0DP25 149 aa7.38□□□□□ -1.23
UPF2-201ENST00000356352 RFC4P35249 363 aa7.38□□□□□ -1.23
UPF2-201ENST00000356352 RBM25P49756 843 aaKnown RBP7.38□□□□□ -1.23
UPF2-201ENST00000356352 MRPS9P82933 396 aaKnown RBP7.38□□□□□ -1.23
UPF2-201ENST00000356352 NCBP1Q09161 790 aaKnown RBP7.38□□□□□ -1.23
UPF2-201ENST00000356352 WTAPQ15007 396 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms