RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 HOXB7P09629 217 aa18.78■□□□□ 0.6
HMGN3-202ENST00000344726 HSPA6P17066 643 aa18.78■□□□□ 0.6
HMGN3-202ENST00000344726 DUSP27Q5VZP5 1158 aa18.78■□□□□ 0.6
HMGN3-202ENST00000344726 COPS6Q7L5N1 327 aa18.78■□□□□ 0.6
HMGN3-202ENST00000344726 NYXQ9GZU5 481 aa18.78■□□□□ 0.6
HMGN3-202ENST00000344726 TAOK3Q9H2K8 898 aa18.78■□□□□ 0.6
HMGN3-202ENST00000344726 RNF39Q9H2S5 420 aa18.78■□□□□ 0.6
HMGN3-202ENST00000344726 DDX21Q9NR30 783 aaKnown RBP eCLIP18.78■□□□□ 0.6
HMGN3-202ENST00000344726 CHPF2Q9P2E5 772 aa18.78■□□□□ 0.6
HMGN3-202ENST00000344726 GTF2E1P29083 439 aaPredicted RBP18.77■□□□□ 0.6
HMGN3-202ENST00000344726 GNAI1P63096 354 aa18.77■□□□□ 0.6
HMGN3-202ENST00000344726 AIMP1Q12904 312 aaKnown RBP18.77■□□□□ 0.6
HMGN3-202ENST00000344726 HDGFL1Q5TGJ6 251 aa18.77■□□□□ 0.6
HMGN3-202ENST00000344726 GLTPD2A6NH11 291 aa18.76■□□□□ 0.59
HMGN3-202ENST00000344726 CALD1Q05682 793 aaKnown RBP18.76■□□□□ 0.59
HMGN3-202ENST00000344726 WDR90Q96KV7 1748 aa18.75■□□□□ 0.59
HMGN3-202ENST00000344726 POTECB2RU33 542 aa18.75■□□□□ 0.59
HMGN3-202ENST00000344726 LAMB2P55268 1798 aa18.75■□□□□ 0.59
HMGN3-202ENST00000344726 ELL2O00472 640 aaPredicted RBP18.74■□□□□ 0.59
HMGN3-202ENST00000344726 CCDC27Q2M243 656 aa18.74■□□□□ 0.59
HMGN3-202ENST00000344726 CCDC93Q567U6 631 aa18.74■□□□□ 0.59
HMGN3-202ENST00000344726 SOGA3Q5TF21 947 aa18.74■□□□□ 0.59
HMGN3-202ENST00000344726 WWC1Q8IX03 1113 aa18.74■□□□□ 0.59
HMGN3-202ENST00000344726 C8orf58Q8NAV2 365 aa18.74■□□□□ 0.59
HMGN3-202ENST00000344726 RBM46Q8TBY0 533 aaKnown RBP18.74■□□□□ 0.59
HMGN3-202ENST00000344726 PARP10Q53GL7 1025 aa18.73■□□□□ 0.59
HMGN3-202ENST00000344726 SYNE4Q8N205 404 aa18.73■□□□□ 0.59
HMGN3-202ENST00000344726 ZNF428Q96B54 188 aa18.73■□□□□ 0.59
HMGN3-202ENST00000344726 HOXA10P31260 410 aaPredicted RBP18.72■□□□□ 0.59
HMGN3-202ENST00000344726 PPP1R42Q7Z4L9 355 aa18.72■□□□□ 0.59
HMGN3-202ENST00000344726 NLRP10Q86W26 655 aa18.72■□□□□ 0.59
HMGN3-202ENST00000344726 TSR2Q969E8 191 aaKnown RBP18.72■□□□□ 0.59
HMGN3-202ENST00000344726 DBF4Q9UBU7 674 aaPredicted RBP18.72■□□□□ 0.59
HMGN3-202ENST00000344726 COL4A5P29400 1685 aa18.72■□□□□ 0.59
HMGN3-202ENST00000344726 ALDH1B1P30837 517 aa18.71■□□□□ 0.59
HMGN3-202ENST00000344726 FKBP4Q02790 459 aaKnown RBP eCLIP18.71■□□□□ 0.59
HMGN3-202ENST00000344726 TCIRG1Q13488 830 aa18.71■□□□□ 0.59
HMGN3-202ENST00000344726 TSPYL6Q8N831 410 aa18.71■□□□□ 0.59
HMGN3-202ENST00000344726 UTP14AQ9BVJ6 771 aaKnown RBP18.71■□□□□ 0.59
HMGN3-202ENST00000344726 ZNF277Q9NRM2 450 aaPredicted RBP18.71■□□□□ 0.59
HMGN3-202ENST00000344726 SLC10A5Q5PT55 438 aa18.7■□□□□ 0.58
HMGN3-202ENST00000344726 DDX60Q8IY21 1712 aaKnown RBP18.7■□□□□ 0.58
HMGN3-202ENST00000344726 DDNO94850 711 aaPredicted RBP18.69■□□□□ 0.58
HMGN3-202ENST00000344726 SLC4A2P04920 1241 aa18.69■□□□□ 0.58
HMGN3-202ENST00000344726 C16orf71Q8IYS4 520 aaPredicted RBP18.69■□□□□ 0.58
HMGN3-202ENST00000344726 FAM9BQ8IZU0 186 aa18.69■□□□□ 0.58
HMGN3-202ENST00000344726 RPGRQ92834 1020 aaKnown RBP18.69■□□□□ 0.58
HMGN3-202ENST00000344726 HYPKQ9NX55 129 aa18.69■□□□□ 0.58
HMGN3-202ENST00000344726 SALL2Q9Y467 1007 aaPredicted RBP18.69■□□□□ 0.58
HMGN3-202ENST00000344726 VEGFAP15692 232 aaPredicted RBP18.68■□□□□ 0.58
HMGN3-202ENST00000344726 HSP90AB3PQ58FF7 597 aa18.68■□□□□ 0.58
HMGN3-202ENST00000344726 ANKRD13DQ6ZTN6 518 aa18.68■□□□□ 0.58
HMGN3-202ENST00000344726 RTKN2Q8IZC4 609 aa18.68■□□□□ 0.58
HMGN3-202ENST00000344726 PLBD2Q8NHP8 589 aa18.68■□□□□ 0.58
HMGN3-202ENST00000344726 CRAMP1Q96RY5 1269 aa18.68■□□□□ 0.58
HMGN3-202ENST00000344726 PHAXQ9H814 394 aaKnown RBP18.68■□□□□ 0.58
HMGN3-202ENST00000344726 COL4A1P02462 1669 aa18.68■□□□□ 0.58
HMGN3-202ENST00000344726 TAF1P21675 1872 aa18.68■□□□□ 0.58
HMGN3-202ENST00000344726 ZNF541Q9H0D2 1346 aa18.68■□□□□ 0.58
HMGN3-202ENST00000344726 HCLS1P14317 486 aaPredicted RBP18.67■□□□□ 0.58
HMGN3-202ENST00000344726 ISCA1Q9BUE6 129 aa18.67■□□□□ 0.58
HMGN3-202ENST00000344726 ABCC4O15439 1325 aa18.67■□□□□ 0.58
HMGN3-202ENST00000344726 RNF123Q5XPI4 1314 aa18.67■□□□□ 0.58
HMGN3-202ENST00000344726 TCERG1O14776 1098 aaKnown RBP18.66■□□□□ 0.58
HMGN3-202ENST00000344726 PPEF1O14829 653 aaPredicted RBP18.66■□□□□ 0.58
HMGN3-202ENST00000344726 HTRA3P83110 453 aa18.66■□□□□ 0.58
HMGN3-202ENST00000344726 FSTL1Q12841 308 aa18.66■□□□□ 0.58
HMGN3-202ENST00000344726 DPY19L2Q6NUT2 758 aa18.66■□□□□ 0.58
HMGN3-202ENST00000344726 RBM17Q96I25 401 aaKnown RBP18.66■□□□□ 0.58
HMGN3-202ENST00000344726 NLRP3Q96P20 1036 aa18.66■□□□□ 0.58
HMGN3-202ENST00000344726 PSMD1Q99460 953 aa18.66■□□□□ 0.58
HMGN3-202ENST00000344726 TRMT112Q9UI30 125 aaKnown RBP18.66■□□□□ 0.58
HMGN3-202ENST00000344726 IL16Q14005 1332 aa18.66■□□□□ 0.58
HMGN3-202ENST00000344726 CACNA1FO60840 1977 aa18.65■□□□□ 0.58
HMGN3-202ENST00000344726 ATP5J2-PTCD1G3V325 749 aa18.65■□□□□ 0.58
HMGN3-202ENST00000344726 IARSP41252 1262 aaKnown RBP18.65■□□□□ 0.58
HMGN3-202ENST00000344726 APLP1P51693 650 aa18.65■□□□□ 0.58
HMGN3-202ENST00000344726 POTEIP0CG38 1075 aa18.64■□□□□ 0.57
HMGN3-202ENST00000344726 POTEJP0CG39 1038 aa18.64■□□□□ 0.57
HMGN3-202ENST00000344726 SH3TC1Q8TE82 1336 aa18.64■□□□□ 0.57
HMGN3-202ENST00000344726 DNAJC5GQ8N7S2 189 aa18.63■□□□□ 0.57
HMGN3-202ENST00000344726 SMC1BQ8NDV3 1235 aa18.63■□□□□ 0.57
HMGN3-202ENST00000344726 SPINK5Q9NQ38 1064 aaPredicted RBP18.63■□□□□ 0.57
HMGN3-202ENST00000344726 FANCIQ9NVI1 1328 aa18.63■□□□□ 0.57
HMGN3-202ENST00000344726 FZD9O00144 591 aa18.62■□□□□ 0.57
HMGN3-202ENST00000344726 C1QBPQ07021 282 aaKnown RBP18.62■□□□□ 0.57
HMGN3-202ENST00000344726 CCDC30Q5VVM6 783 aa18.62■□□□□ 0.57
HMGN3-202ENST00000344726 CC2D2BQ6DHV5 1058 aa18.62■□□□□ 0.57
HMGN3-202ENST00000344726 WDR63Q8IWG1 891 aa18.62■□□□□ 0.57
HMGN3-202ENST00000344726 FAM89AQ96GI7 184 aa18.62■□□□□ 0.57
HMGN3-202ENST00000344726 LRRC37AA6NMS7 1700 aa18.61■□□□□ 0.57
HMGN3-202ENST00000344726 TWISTNBQ3B726 338 aaPredicted RBP18.61■□□□□ 0.57
HMGN3-202ENST00000344726 RIC3Q7Z5B4 369 aa18.61■□□□□ 0.57
HMGN3-202ENST00000344726 L3MBTL3Q96JM7 780 aaPredicted RBP18.61■□□□□ 0.57
HMGN3-202ENST00000344726 ATP6V0A2Q9Y487 856 aa18.61■□□□□ 0.57
HMGN3-202ENST00000344726 SCN4AP35499 1836 aa18.6■□□□□ 0.57
HMGN3-202ENST00000344726 LTBP1Q14766 1721 aa18.6■□□□□ 0.57
HMGN3-202ENST00000344726 DUOX1Q9NRD9 1551 aa18.6■□□□□ 0.57
HMGN3-202ENST00000344726 GOLGA2Q08379 1002 aa18.6■□□□□ 0.57
HMGN3-202ENST00000344726 RTL5Q5HYW3 569 aaPredicted RBP18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms