RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 LMBRD1Q9NUN5 540 aa20.78■□□□□ 0.92
SMC4-201ENST00000344722 SEPT11Q9NVA2 429 aaKnown RBP20.78■□□□□ 0.92
SMC4-201ENST00000344722 PYM1Q9BRP8 204 aaKnown RBP20.78■□□□□ 0.92
SMC4-201ENST00000344722 ZMYM3Q14202 1370 aa20.78■□□□□ 0.92
SMC4-201ENST00000344722 SPECC1Q5M775 1068 aa20.78■□□□□ 0.92
SMC4-201ENST00000344722 POLR3DP05423 398 aaPredicted RBP20.77■□□□□ 0.92
SMC4-201ENST00000344722 TSG101Q99816 390 aa20.77■□□□□ 0.92
SMC4-201ENST00000344722 VPS36Q86VN1 386 aa20.77■□□□□ 0.92
SMC4-201ENST00000344722 HMGXB3Q12766 1538 aa20.77■□□□□ 0.92
SMC4-201ENST00000344722 ORC3Q9UBD5 711 aaPredicted RBP20.77■□□□□ 0.92
SMC4-201ENST00000344722 ABCA10Q8WWZ4 1543 aa20.77■□□□□ 0.92
SMC4-201ENST00000344722 DNMBPQ6XZF7 1577 aa20.77■□□□□ 0.92
SMC4-201ENST00000344722 FSD2A1L4K1 749 aa20.77■□□□□ 0.92
SMC4-201ENST00000344722 LARP1Q6PKG0 1096 aaKnown RBP20.77■□□□□ 0.92
SMC4-201ENST00000344722 AKAP2Q9Y2D5 859 aa20.77■□□□□ 0.92
SMC4-201ENST00000344722 IQGAP2Q13576 1575 aa20.76■□□□□ 0.91
SMC4-201ENST00000344722 IFIT1P09914 478 aaKnown RBP20.76■□□□□ 0.91
SMC4-201ENST00000344722 RHPN1Q8TCX5 695 aa20.76■□□□□ 0.91
SMC4-201ENST00000344722 BCL2L12Q9HB09 334 aa20.76■□□□□ 0.91
SMC4-201ENST00000344722 USP16Q9Y5T5 823 aa20.76■□□□□ 0.91
SMC4-201ENST00000344722 C16orf71Q8IYS4 520 aaPredicted RBP20.76■□□□□ 0.91
SMC4-201ENST00000344722 ZNF213O14771 459 aa20.76■□□□□ 0.91
SMC4-201ENST00000344722 PPP1R42Q7Z4L9 355 aa20.76■□□□□ 0.91
SMC4-201ENST00000344722 TATP17735 454 aaPredicted RBP20.76■□□□□ 0.91
SMC4-201ENST00000344722 PLCD3Q8N3E9 789 aa20.76■□□□□ 0.91
SMC4-201ENST00000344722 AK2P54819 239 aa20.75■□□□□ 0.91
SMC4-201ENST00000344722 SLC12A7Q9Y666 1083 aa20.75■□□□□ 0.91
SMC4-201ENST00000344722 MEIS3Q99687 375 aa20.75■□□□□ 0.91
SMC4-201ENST00000344722 GOPCQ9HD26 462 aa20.75■□□□□ 0.91
SMC4-201ENST00000344722 CTCFLQ8NI51 663 aaPredicted RBP20.75■□□□□ 0.91
SMC4-201ENST00000344722 RTL1A6NKG5 1358 aa20.75■□□□□ 0.91
SMC4-201ENST00000344722 MAGI1Q96QZ7 1491 aaPredicted RBP20.75■□□□□ 0.91
SMC4-201ENST00000344722 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.75■□□□□ 0.911e-6■■■■■ 397.5
SMC4-201ENST00000344722 GOLGA8AA7E2F4 631 aa20.74■□□□□ 0.91
SMC4-201ENST00000344722 N4BP3O15049 544 aa20.74■□□□□ 0.91
SMC4-201ENST00000344722 FAM114A1Q8IWE2 563 aa20.74■□□□□ 0.91
SMC4-201ENST00000344722 OTUD6BQ8N6M0 293 aa20.74■□□□□ 0.91
SMC4-201ENST00000344722 ARHGEF11O15085 1522 aa20.74■□□□□ 0.91
SMC4-201ENST00000344722 SYTL4Q96C24 671 aaPredicted RBP20.74■□□□□ 0.91
SMC4-201ENST00000344722 EVCP57679 992 aa20.74■□□□□ 0.91
SMC4-201ENST00000344722 UTP14CQ5TAP6 766 aaKnown RBP20.74■□□□□ 0.91
SMC4-201ENST00000344722 PRAG1Q86YV5 1406 aa20.74■□□□□ 0.91
SMC4-201ENST00000344722 TDRD12Q587J7 1177 aaKnown RBP20.74■□□□□ 0.91
SMC4-201ENST00000344722 RBM8AQ9Y5S9 174 aaKnown RBP20.74■□□□□ 0.91
SMC4-201ENST00000344722 EMILIN1Q9Y6C2 1016 aa20.74■□□□□ 0.91
SMC4-201ENST00000344722 IDH1O75874 414 aaKnown RBP20.73■□□□□ 0.91
SMC4-201ENST00000344722 DMTNQ08495 405 aa20.73■□□□□ 0.91
SMC4-201ENST00000344722 SSBP05455 408 aaKnown RBP eCLIP20.73■□□□□ 0.919e-17■■■■■ 55.5
SMC4-201ENST00000344722 CCDC61Q9Y6R9 512 aa20.73■□□□□ 0.91
SMC4-201ENST00000344722 CYLC1P35663 651 aaPredicted RBP20.73■□□□□ 0.91
SMC4-201ENST00000344722 BRF1Q92994 677 aa20.73■□□□□ 0.91
SMC4-201ENST00000344722 IARSP41252 1262 aaKnown RBP20.72■□□□□ 0.91
SMC4-201ENST00000344722 MTIF2P46199 727 aaKnown RBP20.72■□□□□ 0.91
SMC4-201ENST00000344722 SPAG1Q07617 926 aa20.72■□□□□ 0.91
SMC4-201ENST00000344722 NUDT16Q96DE0 195 aaKnown RBP20.72■□□□□ 0.91
SMC4-201ENST00000344722 IFNKQ9P0W0 207 aa20.72■□□□□ 0.91
SMC4-201ENST00000344722 GOLIM4O00461 696 aa20.72■□□□□ 0.91
SMC4-201ENST00000344722 MATR3P43243 847 aaKnown RBP eCLIP20.72■□□□□ 0.91
SMC4-201ENST00000344722 C17orf53Q8N3J3 647 aaPredicted RBP20.72■□□□□ 0.91
SMC4-201ENST00000344722 PIK3R4Q99570 1358 aa20.72■□□□□ 0.91
SMC4-201ENST00000344722 ADGRF5Q8IZF2 1346 aa20.72■□□□□ 0.91
SMC4-201ENST00000344722 DNA2P51530 1060 aa20.72■□□□□ 0.91
SMC4-201ENST00000344722 THOC2Q8NI27 1593 aaKnown RBP20.72■□□□□ 0.91
SMC4-201ENST00000344722 TAOK3Q9H2K8 898 aa20.72■□□□□ 0.91
SMC4-201ENST00000344722 KIF14Q15058 1648 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 GBP6Q6ZN66 633 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 CCDC121Q6ZUS5 278 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 ATP8B2P98198 1209 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 ELF2Q15723 593 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 RNF216Q9NWF9 866 aaPredicted RBP20.71■□□□□ 0.91
SMC4-201ENST00000344722 NESP48681 1621 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 UGGT2Q9NYU1 1516 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 ZNF75DP51815 510 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 CABP4P57796 275 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 MSL1Q68DK7 614 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 KIAA0586Q9BVV6 1533 aa20.71■□□□□ 0.91
SMC4-201ENST00000344722 LMOD1P29536 600 aaPredicted RBP20.71■□□□□ 0.91
SMC4-201ENST00000344722 ATRIPQ8WXE1 791 aa20.7■□□□□ 0.9
SMC4-201ENST00000344722 BLMP54132 1417 aaPredicted RBP20.7■□□□□ 0.9
SMC4-201ENST00000344722 PPP2R3AQ06190 1150 aa20.7■□□□□ 0.9
SMC4-201ENST00000344722 FAM76AQ8TAV0 307 aa20.7■□□□□ 0.9
SMC4-201ENST00000344722 IKQ13123 557 aaPredicted RBP20.7■□□□□ 0.9
SMC4-201ENST00000344722 BIVM-ERCC5R4GMW8 1640 aa20.69■□□□□ 0.9
SMC4-201ENST00000344722 PPP1R12BO60237 982 aaPredicted RBP20.69■□□□□ 0.9
SMC4-201ENST00000344722 CEP85Q6P2H3 762 aa20.69■□□□□ 0.9
SMC4-201ENST00000344722 PPM1EQ8WY54 764 aa20.69■□□□□ 0.9
SMC4-201ENST00000344722 NSRP1Q9H0G5 558 aaKnown RBP20.69■□□□□ 0.9
SMC4-201ENST00000344722 RMND1Q9NWS8 449 aa20.69■□□□□ 0.9
SMC4-201ENST00000344722 ATL3Q6DD88 541 aa20.69■□□□□ 0.9
SMC4-201ENST00000344722 NAPBQ9H115 298 aa20.69■□□□□ 0.9
SMC4-201ENST00000344722 CHMLP26374 656 aa20.68■□□□□ 0.9
SMC4-201ENST00000344722 TUBB2AQ13885 445 aa20.68■□□□□ 0.9
SMC4-201ENST00000344722 TUBB2BQ9BVA1 445 aa20.68■□□□□ 0.9
SMC4-201ENST00000344722 PER1O15534 1290 aaPredicted RBP20.68■□□□□ 0.9
SMC4-201ENST00000344722 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.68■□□□□ 0.97e-7■■□□□ 12.7
SMC4-201ENST00000344722 DBF4Q9UBU7 674 aaPredicted RBP20.68■□□□□ 0.9
SMC4-201ENST00000344722 PUF60Q9UHX1 559 aaKnown RBP20.68■□□□□ 0.9
SMC4-201ENST00000344722 EIF2AK4Q9P2K8 1649 aaKnown RBP20.68■□□□□ 0.9
SMC4-201ENST00000344722 PHACTR2O75167 634 aa20.68■□□□□ 0.9
SMC4-201ENST00000344722 METAP2P50579 478 aaKnown RBP eCLIP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms