RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 NECTIN2Q92692 538 aa16.23■□□□□ 0.19
SGCA-202ENST00000344627 RPGRQ92834 1020 aaKnown RBP16.23■□□□□ 0.19
SGCA-202ENST00000344627 CRAMP1Q96RY5 1269 aa16.23■□□□□ 0.19
SGCA-202ENST00000344627 TAF1DQ9H5J8 278 aaPredicted RBP16.23■□□□□ 0.19
SGCA-202ENST00000344627 HACL1Q9UJ83 578 aa16.23■□□□□ 0.19
SGCA-202ENST00000344627 NUP98P52948 1817 aa16.22■□□□□ 0.19
SGCA-202ENST00000344627 SLX4Q8IY92 1834 aa16.22■□□□□ 0.19
SGCA-202ENST00000344627 GPTP24298 496 aa16.22■□□□□ 0.19
SGCA-202ENST00000344627 GIGYF2Q6Y7W6 1299 aaKnown RBP16.22■□□□□ 0.19
SGCA-202ENST00000344627 RBM17Q96I25 401 aaKnown RBP16.22■□□□□ 0.19
SGCA-202ENST00000344627 HSP90AB3PQ58FF7 597 aa16.21■□□□□ 0.19
SGCA-202ENST00000344627 SYNE4Q8N205 404 aa16.21■□□□□ 0.19
SGCA-202ENST00000344627 PASKQ96RG2 1323 aa16.2■□□□□ 0.18
SGCA-202ENST00000344627 SCN4AP35499 1836 aa16.2■□□□□ 0.18
SGCA-202ENST00000344627 ZEB1P37275 1124 aaPredicted RBP16.2■□□□□ 0.18
SGCA-202ENST00000344627 EIF6P56537 245 aaKnown RBP16.2■□□□□ 0.18
SGCA-202ENST00000344627 NUTM1Q86Y26 1132 aa16.2■□□□□ 0.18
SGCA-202ENST00000344627 ZNF34Q8IZ26 560 aa16.2■□□□□ 0.18
SGCA-202ENST00000344627 NLRP3Q96P20 1036 aa16.2■□□□□ 0.18
SGCA-202ENST00000344627 ZNF277Q9NRM2 450 aaPredicted RBP16.2■□□□□ 0.18
SGCA-202ENST00000344627 ANXA1P04083 346 aa16.19■□□□□ 0.18
SGCA-202ENST00000344627 HSPA1AP0DMV8 641 aaKnown RBP16.19■□□□□ 0.18
SGCA-202ENST00000344627 HSPA1BP0DMV9 641 aaKnown RBP16.19■□□□□ 0.18
SGCA-202ENST00000344627 EPHX2P34913 555 aa16.19■□□□□ 0.18
SGCA-202ENST00000344627 SLC10A5Q5PT55 438 aa16.19■□□□□ 0.18
SGCA-202ENST00000344627 TMEM88BA6NKF7 163 aa16.18■□□□□ 0.18
SGCA-202ENST00000344627 AIMP1Q12904 312 aaKnown RBP16.18■□□□□ 0.18
SGCA-202ENST00000344627 COL13A1Q5TAT6 717 aaPredicted RBP16.18■□□□□ 0.18
SGCA-202ENST00000344627 TNS4Q8IZW8 715 aa16.18■□□□□ 0.18
SGCA-202ENST00000344627 SUPT20HQ8NEM7 779 aa16.18■□□□□ 0.18
SGCA-202ENST00000344627 TRIM35Q9UPQ4 493 aa16.18■□□□□ 0.18
SGCA-202ENST00000344627 CNTNAP1P78357 1384 aa16.17■□□□□ 0.18
SGCA-202ENST00000344627 LMOD1P29536 600 aaPredicted RBP16.17■□□□□ 0.18
SGCA-202ENST00000344627 KRT24Q2M2I5 525 aa16.17■□□□□ 0.18
SGCA-202ENST00000344627 PROSER3Q2NL68 480 aa16.17■□□□□ 0.18
SGCA-202ENST00000344627 SNED1Q8TER0 1413 aa16.17■□□□□ 0.18
SGCA-202ENST00000344627 CHL1O00533 1208 aa16.16■□□□□ 0.18
SGCA-202ENST00000344627 BBOX1O75936 387 aa16.16■□□□□ 0.18
SGCA-202ENST00000344627 NTSR2O95665 410 aa16.16■□□□□ 0.18
SGCA-202ENST00000344627 ITGBL1O95965 494 aaPredicted RBP16.16■□□□□ 0.18
SGCA-202ENST00000344627 SUSD4Q5VX71 490 aa16.16■□□□□ 0.18
SGCA-202ENST00000344627 UTP14AQ9BVJ6 771 aaKnown RBP16.16■□□□□ 0.18
SGCA-202ENST00000344627 CLEC11AQ9Y240 323 aa16.16■□□□□ 0.18
SGCA-202ENST00000344627 UBN2Q6ZU65 1347 aa16.16■□□□□ 0.18
SGCA-202ENST00000344627 ZNF541Q9H0D2 1346 aa16.16■□□□□ 0.18
SGCA-202ENST00000344627 ABCC12Q96J65 1359 aa16.15■□□□□ 0.18
SGCA-202ENST00000344627 APAF1O14727 1248 aa16.15■□□□□ 0.18
SGCA-202ENST00000344627 PPEF1O14829 653 aaPredicted RBP16.15■□□□□ 0.18
SGCA-202ENST00000344627 PDIA6Q15084 440 aa16.15■□□□□ 0.18
SGCA-202ENST00000344627 EAPPQ56P03 285 aaPredicted RBP16.15■□□□□ 0.18
SGCA-202ENST00000344627 COPS6Q7L5N1 327 aa16.15■□□□□ 0.18
SGCA-202ENST00000344627 TMC4Q7Z404 712 aa16.15■□□□□ 0.18
SGCA-202ENST00000344627 HOXB7P09629 217 aa16.14■□□□□ 0.17
SGCA-202ENST00000344627 POTEIP0CG38 1075 aa16.14■□□□□ 0.17
SGCA-202ENST00000344627 POTEJP0CG39 1038 aa16.14■□□□□ 0.17
SGCA-202ENST00000344627 USP50Q70EL3 339 aaPredicted RBP16.14■□□□□ 0.17
SGCA-202ENST00000344627 CNTROBQ8N137 903 aa16.14■□□□□ 0.17
SGCA-202ENST00000344627 LARGE2Q8N3Y3 721 aa16.14■□□□□ 0.17
SGCA-202ENST00000344627 XAGE3Q8WTP9 111 aa16.14■□□□□ 0.17
SGCA-202ENST00000344627 PRDM10Q9NQV6 1147 aa16.14■□□□□ 0.17
SGCA-202ENST00000344627 ATP6V0A2Q9Y487 856 aa16.14■□□□□ 0.17
SGCA-202ENST00000344627 HDGFL1Q5TGJ6 251 aa16.13■□□□□ 0.17
SGCA-202ENST00000344627 OLFM4Q6UX06 510 aa16.13■□□□□ 0.17
SGCA-202ENST00000344627 LRP10Q7Z4F1 713 aa16.13■□□□□ 0.17
SGCA-202ENST00000344627 NIM1KQ8IY84 436 aa16.13■□□□□ 0.17
SGCA-202ENST00000344627 AIDAQ96BJ3 306 aa16.13■□□□□ 0.17
SGCA-202ENST00000344627 DDX21Q9NR30 783 aaKnown RBP eCLIP16.13■□□□□ 0.17
SGCA-202ENST00000344627 MKRN1Q9UHC7 482 aaKnown RBP16.13■□□□□ 0.17
SGCA-202ENST00000344627 PCNTO95613 3336 aa16.13■□□□□ 0.17
SGCA-202ENST00000344627 RASSF10A6NK89 507 aa16.12■□□□□ 0.17
SGCA-202ENST00000344627 TCERG1O14776 1098 aaKnown RBP16.12■□□□□ 0.17
SGCA-202ENST00000344627 RTFDC1Q9BY42 306 aaPredicted RBP16.12■□□□□ 0.17
SGCA-202ENST00000344627 CHMP4AQ9BY43 222 aa16.12■□□□□ 0.17
SGCA-202ENST00000344627 CHPF2Q9P2E5 772 aa16.12■□□□□ 0.17
SGCA-202ENST00000344627 CDHR2Q9BYE9 1310 aa16.12■□□□□ 0.17
SGCA-202ENST00000344627 SP8Q8IXZ3 490 aa16.11■□□□□ 0.17
SGCA-202ENST00000344627 CFAP44Q96MT7 982 aa16.11■□□□□ 0.17
SGCA-202ENST00000344627 HSP90B1P14625 803 aaKnown RBP16.1■□□□□ 0.17
SGCA-202ENST00000344627 CTCFP49711 727 aaPredicted RBP16.1■□□□□ 0.17
SGCA-202ENST00000344627 MAP2K1Q02750 393 aaPredicted RBP16.1■□□□□ 0.17
SGCA-202ENST00000344627 CALD1Q05682 793 aaKnown RBP16.1■□□□□ 0.17
SGCA-202ENST00000344627 TCIRG1Q13488 830 aa16.1■□□□□ 0.17
SGCA-202ENST00000344627 DEFB115Q30KQ5 88 aa16.1■□□□□ 0.17
SGCA-202ENST00000344627 DUSP27Q5VZP5 1158 aa16.1■□□□□ 0.17
SGCA-202ENST00000344627 DDX46Q7L014 1031 aaKnown RBP16.1■□□□□ 0.17
SGCA-202ENST00000344627 ZNF428Q96B54 188 aa16.1■□□□□ 0.17
SGCA-202ENST00000344627 MBIPQ9NS73 344 aa16.1■□□□□ 0.17
SGCA-202ENST00000344627 ELL2O00472 640 aaPredicted RBP16.09■□□□□ 0.17
SGCA-202ENST00000344627 PPIP5K2O43314 1243 aa16.09■□□□□ 0.17
SGCA-202ENST00000344627 ECE1P42892 770 aa16.09■□□□□ 0.17
SGCA-202ENST00000344627 NLRP10Q86W26 655 aa16.09■□□□□ 0.17
SGCA-202ENST00000344627 ADARB2Q9NS39 739 aaKnown RBP16.09■□□□□ 0.17
SGCA-202ENST00000344627 ZNRF3Q9ULT6 936 aa16.09■□□□□ 0.17
SGCA-202ENST00000344627 GJA3Q9Y6H8 435 aa16.09■□□□□ 0.17
SGCA-202ENST00000344627 SH3TC1Q8TE82 1336 aa16.09■□□□□ 0.17
SGCA-202ENST00000344627 ADAMTSL1Q8N6G6 1762 aa16.08■□□□□ 0.17
SGCA-202ENST00000344627 ZNF316A6NFI3 1004 aaPredicted RBP16.08■□□□□ 0.16
SGCA-202ENST00000344627 SCNN1DP51172 638 aa16.08■□□□□ 0.16
SGCA-202ENST00000344627 GNAI1P63096 354 aa16.08■□□□□ 0.16
SGCA-202ENST00000344627 TNIP1Q15025 636 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms