RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 ZSCAN16Q9H4T2 348 aaPredicted RBP8.39□□□□□ -1.07
VCAN-202ENST00000342785 SGSM2O43147 1006 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 CREB3L3Q68CJ9 461 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 LGR6Q9HBX8 967 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 BABAM1Q9NWV8 329 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 SBNO1A3KN83 1393 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 NAP1L1P55209 391 aaKnown RBP8.39□□□□□ -1.07
VCAN-202ENST00000342785 KIAA0232Q92628 1395 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 PBRM1Q86U86 1689 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 ANKRD18BA2A2Z9 1011 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 TNNT1P13805 278 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 RBSNQ9H1K0 784 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 PDCL3Q9H2J4 239 aa8.39□□□□□ -1.07
VCAN-202ENST00000342785 OFD1O75665 1012 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 MCMDC2Q4G0Z9 681 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 IFIT3O14879 490 aaKnown RBP8.38□□□□□ -1.07
VCAN-202ENST00000342785 HS1BP3Q53T59 392 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 CADPS2Q86UW7 1296 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 CCAR1Q8IX12 1150 aaKnown RBP8.38□□□□□ -1.07
VCAN-202ENST00000342785 CCDC171Q6TFL3 1326 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 CCDC196A0A1B0GTZ2 297 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 KIF2AO00139 706 aaPredicted RBP8.38□□□□□ -1.07
VCAN-202ENST00000342785 HOXB7P09629 217 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 HSP90AB3PQ58FF7 597 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 MICU3Q86XE3 530 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 UBXN4Q92575 508 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 USP44Q9H0E7 712 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 RTL1A6NKG5 1358 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 RNMTO43148 476 aaKnown RBP8.38□□□□□ -1.07
VCAN-202ENST00000342785 IL15P40933 162 aaPredicted RBP8.38□□□□□ -1.07
VCAN-202ENST00000342785 IARSP41252 1262 aaKnown RBP8.38□□□□□ -1.07
VCAN-202ENST00000342785 CCDC186Q7Z3E2 898 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 PIBF1Q8WXW3 757 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 BICDL1Q6ZP65 573 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 KIF18AQ8NI77 898 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 TRMT1Q9NXH9 659 aaKnown RBP8.38□□□□□ -1.07
VCAN-202ENST00000342785 KLF18A0A0U1RQI7 1052 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 NOLC1Q14978 699 aaKnown RBP eCLIP8.38□□□□□ -1.07
VCAN-202ENST00000342785 ACBD3Q9H3P7 528 aa8.38□□□□□ -1.07
VCAN-202ENST00000342785 GOLGA8AA7E2F4 631 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 SLC12A7Q9Y666 1083 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 Q6ZUG5 572 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 STX1AQ16623 288 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 NCOA7Q8NI08 942 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 LMBRD1Q9NUN5 540 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 MAGEC2Q9UBF1 373 aaPredicted RBP8.37□□□□□ -1.07
VCAN-202ENST00000342785 SAMD9LQ8IVG5 1584 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 DTNBO60941 627 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 IL17REQ8NFR9 667 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 CABLES1Q8TDN4 633 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 SIRT1Q96EB6 747 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 TEX13AQ9BXU3 409 aaPredicted RBP8.37□□□□□ -1.07
VCAN-202ENST00000342785 NEMFO60524 1076 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 FAM173BQ6P4H8 233 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 KLHDC4Q8TBB5 520 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 UGGT1Q9NYU2 1555 aa8.37□□□□□ -1.07
VCAN-202ENST00000342785 NUTM2BA6NNL0 878 aaPredicted RBP8.36□□□□□ -1.07
VCAN-202ENST00000342785 NUTM2EB1AL46 878 aaPredicted RBP8.36□□□□□ -1.07
VCAN-202ENST00000342785 NBPF6Q5VWK0 638 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 KLHL10Q6JEL2 608 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 NUTM2AQ8IVF1 878 aaPredicted RBP8.36□□□□□ -1.07
VCAN-202ENST00000342785 NBPF4Q96M43 638 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 SNX14Q9Y5W7 946 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 RAD50Q92878 1312 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 ANO6Q4KMQ2 910 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 SAMD1Q6SPF0 538 aaPredicted RBP8.36□□□□□ -1.07
VCAN-202ENST00000342785 BICC1Q9H694 974 aaKnown RBP8.36□□□□□ -1.07
VCAN-202ENST00000342785 ANTXR1Q9H6X2 564 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 ZFYP08048 801 aaPredicted RBP8.36□□□□□ -1.07
VCAN-202ENST00000342785 ZNF445P59923 1031 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 ATP2B3Q16720 1220 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 CAGE1Q8TC20 777 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 PHF23Q9BUL5 403 aaPredicted RBP8.36□□□□□ -1.07
VCAN-202ENST00000342785 ZNHIT6Q9NWK9 470 aaKnown RBP8.36□□□□□ -1.07
VCAN-202ENST00000342785 TRPM2O94759 1503 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 STIM1Q13586 685 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 CNNM3Q8NE01 707 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 CDK5RAP3Q96JB5 506 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 DNAJC25Q9H1X3 360 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 TFCP2Q12800 502 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 RUFY3Q7L099 469 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 ZCRB1Q8TBF4 217 aaKnown RBP8.36□□□□□ -1.07
VCAN-202ENST00000342785 SSH3Q8TE77 659 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 PRIMPOLQ96LW4 560 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 ZNF853P0CG23 659 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 TOP1P11387 765 aaKnown RBP8.36□□□□□ -1.07
VCAN-202ENST00000342785 LTKP29376 864 aa8.36□□□□□ -1.07
VCAN-202ENST00000342785 KIF24Q5T7B8 1368 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 DYNC1I1O14576 645 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 BRD1O95696 1058 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 SLC5A1P13866 664 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 TYRO3Q06418 890 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 CCDC144CPQ8IYA2 1237 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 RANBP6O60518 1105 aaKnown RBP8.35□□□□□ -1.07
VCAN-202ENST00000342785 TMEM67Q5HYA8 995 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 CEP131Q9UPN4 1083 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 AOX1Q06278 1338 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 KDM5DQ9BY66 1539 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 HSPA4P34932 840 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 PKP1Q13835 747 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms