RNA–Protein interactions for RNA: ENST00000340424.4

SIRPB3P-201, Transcript of signal regulatory protein beta 3, pseudogene, humanhuman

BASIC

Gene SIRPB3P, Length 1,216 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIRPB3P-201ENST00000340424 GPTP24298 496 aa17.26■□□□□ 0.35
SIRPB3P-201ENST00000340424 ALDH1B1P30837 517 aa17.26■□□□□ 0.35
SIRPB3P-201ENST00000340424 PRPF40BQ6NWY9 871 aaKnown RBP17.26■□□□□ 0.35
SIRPB3P-201ENST00000340424 WWC1Q8IX03 1113 aa17.26■□□□□ 0.35
SIRPB3P-201ENST00000340424 RNF181Q9P0P0 153 aa17.26■□□□□ 0.35
SIRPB3P-201ENST00000340424 SBF1O95248 1867 aa17.26■□□□□ 0.35
SIRPB3P-201ENST00000340424 C1QTNF8P60827 252 aa17.25■□□□□ 0.35
SIRPB3P-201ENST00000340424 AIMP1Q12904 312 aaKnown RBP17.25■□□□□ 0.35
SIRPB3P-201ENST00000340424 CRY2Q49AN0 593 aa17.25■□□□□ 0.35
SIRPB3P-201ENST00000340424 ABCC12Q96J65 1359 aa17.25■□□□□ 0.35
SIRPB3P-201ENST00000340424 LTBP3Q9NS15 1303 aa17.24■□□□□ 0.35
SIRPB3P-201ENST00000340424 C21orf2O43822 256 aa17.24■□□□□ 0.35
SIRPB3P-201ENST00000340424 NTSR2O95665 410 aa17.24■□□□□ 0.35
SIRPB3P-201ENST00000340424 SUSD4Q5VX71 490 aa17.24■□□□□ 0.35
SIRPB3P-201ENST00000340424 PLBD2Q8NHP8 589 aa17.24■□□□□ 0.35
SIRPB3P-201ENST00000340424 UTP14AQ9BVJ6 771 aaKnown RBP17.24■□□□□ 0.35
SIRPB3P-201ENST00000340424 TNRC6CQ9HCJ0 1690 aaKnown RBP17.23■□□□□ 0.35
SIRPB3P-201ENST00000340424 FER1L6Q2WGJ9 1857 aa17.23■□□□□ 0.35
SIRPB3P-201ENST00000340424 TCIRG1Q13488 830 aa17.23■□□□□ 0.35
SIRPB3P-201ENST00000340424 ERFEQ4G0M1 354 aa17.23■□□□□ 0.35
SIRPB3P-201ENST00000340424 ANKRD13DQ6ZTN6 518 aa17.23■□□□□ 0.35
SIRPB3P-201ENST00000340424 NUTM1Q86Y26 1132 aa17.23■□□□□ 0.35
SIRPB3P-201ENST00000340424 ZNF526Q8TF50 670 aaPredicted RBP17.23■□□□□ 0.35
SIRPB3P-201ENST00000340424 SLX4Q8IY92 1834 aa17.23■□□□□ 0.35
SIRPB3P-201ENST00000340424 KDM2BQ8NHM5 1336 aa17.22■□□□□ 0.35
SIRPB3P-201ENST00000340424 NFKBIEO00221 500 aa17.22■□□□□ 0.35
SIRPB3P-201ENST00000340424 RASSF7Q02833 373 aa17.22■□□□□ 0.35
SIRPB3P-201ENST00000340424 CCDC30Q5VVM6 783 aa17.22■□□□□ 0.35
SIRPB3P-201ENST00000340424 WDR63Q8IWG1 891 aa17.22■□□□□ 0.35
SIRPB3P-201ENST00000340424 TAOK3Q9H2K8 898 aa17.22■□□□□ 0.35
SIRPB3P-201ENST00000340424 CACNA1SQ13698 1873 aa17.22■□□□□ 0.35
SIRPB3P-201ENST00000340424 HOXA10P31260 410 aaPredicted RBP17.21■□□□□ 0.35
SIRPB3P-201ENST00000340424 GRIPAP1Q4V328 841 aa17.21■□□□□ 0.35
SIRPB3P-201ENST00000340424 CCDC93Q567U6 631 aa17.21■□□□□ 0.35
SIRPB3P-201ENST00000340424 SLC10A5Q5PT55 438 aa17.21■□□□□ 0.35
SIRPB3P-201ENST00000340424 NLRP10Q86W26 655 aa17.21■□□□□ 0.35
SIRPB3P-201ENST00000340424 C8orf58Q8NAV2 365 aa17.21■□□□□ 0.35
SIRPB3P-201ENST00000340424 RPGRQ92834 1020 aaKnown RBP17.21■□□□□ 0.35
SIRPB3P-201ENST00000340424 GOLGA2Q08379 1002 aa17.2■□□□□ 0.34
SIRPB3P-201ENST00000340424 CC2D2BQ6DHV5 1058 aa17.2■□□□□ 0.34
SIRPB3P-201ENST00000340424 RTKN2Q8IZC4 609 aa17.2■□□□□ 0.34
SIRPB3P-201ENST00000340424 C7orf43Q8WVR3 580 aa17.2■□□□□ 0.34
SIRPB3P-201ENST00000340424 NLRP3Q96P20 1036 aa17.2■□□□□ 0.34
SIRPB3P-201ENST00000340424 TIAM2Q8IVF5 1701 aa17.19■□□□□ 0.34
SIRPB3P-201ENST00000340424 ELL2O00472 640 aaPredicted RBP17.19■□□□□ 0.34
SIRPB3P-201ENST00000340424 RBM17Q96I25 401 aaKnown RBP17.19■□□□□ 0.34
SIRPB3P-201ENST00000340424 CRAMP1Q96RY5 1269 aa17.19■□□□□ 0.34
SIRPB3P-201ENST00000340424 SH3TC1Q8TE82 1336 aa17.19■□□□□ 0.34
SIRPB3P-201ENST00000340424 DICER1Q9UPY3 1922 aaKnown RBP17.18■□□□□ 0.34
SIRPB3P-201ENST00000340424 KIF3CO14782 793 aa17.18■□□□□ 0.34
SIRPB3P-201ENST00000340424 DDX58O95786 925 aaKnown RBP17.18■□□□□ 0.34
SIRPB3P-201ENST00000340424 TRIM28Q13263 835 aaKnown RBP17.18■□□□□ 0.34
SIRPB3P-201ENST00000340424 FAM9BQ8IZU0 186 aa17.18■□□□□ 0.34
SIRPB3P-201ENST00000340424 TSR2Q969E8 191 aaKnown RBP17.18■□□□□ 0.34
SIRPB3P-201ENST00000340424 ISCA1Q9BUE6 129 aa17.18■□□□□ 0.34
SIRPB3P-201ENST00000340424 TRMT112Q9UI30 125 aaKnown RBP17.18■□□□□ 0.34
SIRPB3P-201ENST00000340424 STK31Q9BXU1 1019 aa17.17■□□□□ 0.34
SIRPB3P-201ENST00000340424 CCDC88AQ3V6T2 1871 aa17.16■□□□□ 0.34
SIRPB3P-201ENST00000340424 HSP90B1P14625 803 aaKnown RBP17.16■□□□□ 0.34
SIRPB3P-201ENST00000340424 PRELPP51888 382 aa17.16■□□□□ 0.34
SIRPB3P-201ENST00000340424 FKBP4Q02790 459 aaKnown RBP eCLIP17.16■□□□□ 0.34
SIRPB3P-201ENST00000340424 MKRN4PQ13434 485 aaPredicted RBP17.16■□□□□ 0.34
SIRPB3P-201ENST00000340424 TWISTNBQ3B726 338 aaPredicted RBP17.16■□□□□ 0.34
SIRPB3P-201ENST00000340424 RIC3Q7Z5B4 369 aa17.16■□□□□ 0.34
SIRPB3P-201ENST00000340424 FANCIQ9NVI1 1328 aa17.16■□□□□ 0.34
SIRPB3P-201ENST00000340424 GLTPD2A6NH11 291 aa17.15■□□□□ 0.34
SIRPB3P-201ENST00000340424 DPY19L2Q6NUT2 758 aa17.15■□□□□ 0.34
SIRPB3P-201ENST00000340424 TSPYL6Q8N831 410 aa17.15■□□□□ 0.34
SIRPB3P-201ENST00000340424 TOMM70O94826 608 aa17.14■□□□□ 0.33
SIRPB3P-201ENST00000340424 PSMD1Q99460 953 aa17.14■□□□□ 0.33
SIRPB3P-201ENST00000340424 TMX4Q9H1E5 349 aaPredicted RBP17.14■□□□□ 0.33
SIRPB3P-201ENST00000340424 MYH16Q9H6N6 1097 aa17.14■□□□□ 0.33
SIRPB3P-201ENST00000340424 PHAXQ9H814 394 aaKnown RBP17.14■□□□□ 0.33
SIRPB3P-201ENST00000340424 PPEF1O14829 653 aaPredicted RBP17.13■□□□□ 0.33
SIRPB3P-201ENST00000340424 C16orf71Q8IYS4 520 aaPredicted RBP17.13■□□□□ 0.33
SIRPB3P-201ENST00000340424 NMRK2Q9NPI5 230 aa17.13■□□□□ 0.33
SIRPB3P-201ENST00000340424 SNED1Q8TER0 1413 aa17.13■□□□□ 0.33
SIRPB3P-201ENST00000340424 ATP5J2-PTCD1G3V325 749 aa17.12■□□□□ 0.33
SIRPB3P-201ENST00000340424 BBOX1O75936 387 aa17.12■□□□□ 0.33
SIRPB3P-201ENST00000340424 C3orf67Q6ZVT6 689 aa17.12■□□□□ 0.33
SIRPB3P-201ENST00000340424 CCDC191Q8NCU4 936 aa17.12■□□□□ 0.33
SIRPB3P-201ENST00000340424 LAMB2P55268 1798 aa17.12■□□□□ 0.33
SIRPB3P-201ENST00000340424 CACNA1FO60840 1977 aa17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 SENP3-EIF4A1A0A087X0R7 540 aa17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 HCLS1P14317 486 aaPredicted RBP17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 KSR2Q6VAB6 950 aa17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 DDX46Q7L014 1031 aaKnown RBP17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 TMC4Q7Z404 712 aa17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 ZBTB38Q8NAP3 1195 aaPredicted RBP17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 RBM46Q8TBY0 533 aaKnown RBP17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 METTL22Q9BUU2 404 aaPredicted RBP17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 SALL2Q9Y467 1007 aaPredicted RBP17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 ATP6V0A2Q9Y487 856 aa17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 ABCC4O15439 1325 aa17.11■□□□□ 0.33
SIRPB3P-201ENST00000340424 DDX60Q8IY21 1712 aaKnown RBP17.1■□□□□ 0.33
SIRPB3P-201ENST00000340424 WDR90Q96KV7 1748 aa17.1■□□□□ 0.33
SIRPB3P-201ENST00000340424 CCER2I3L3R5 266 aa17.1■□□□□ 0.33
SIRPB3P-201ENST00000340424 VEGFAP15692 232 aaPredicted RBP17.1■□□□□ 0.33
SIRPB3P-201ENST00000340424 FAM89AQ96GI7 184 aa17.1■□□□□ 0.33
SIRPB3P-201ENST00000340424 MYD88Q99836 296 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms