RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CRNKL1Q9BZJ0 848 aaKnown RBP12.06□□□□□ -0.48
USP54-201ENST00000339859 ERBB3P21860 1342 aa12.06□□□□□ -0.48
USP54-201ENST00000339859 PDE8AO60658 829 aa12.06□□□□□ -0.48
USP54-201ENST00000339859 RABEP1Q15276 862 aa12.06□□□□□ -0.48
USP54-201ENST00000339859 KDM4FA0A1W2PPD8 638 aa12.06□□□□□ -0.48
USP54-201ENST00000339859 VPS37CA5D8V6 355 aaPredicted RBP12.06□□□□□ -0.48
USP54-201ENST00000339859 FOSBP53539 338 aa12.06□□□□□ -0.48
USP54-201ENST00000339859 SMARCA5O60264 1052 aaPredicted RBP12.05□□□□□ -0.48
USP54-201ENST00000339859 PPP4R3BQ5MIZ7 849 aa12.05□□□□□ -0.48
USP54-201ENST00000339859 MINDY4BA8MYZ0 360 aa12.05□□□□□ -0.48
USP54-201ENST00000339859 CREBRFQ8IUR6 639 aa12.05□□□□□ -0.48
USP54-201ENST00000339859 ECHDC1Q9NTX5 307 aa12.05□□□□□ -0.48
USP54-201ENST00000339859 CDK12Q9NYV4 1490 aaPredicted RBP12.05□□□□□ -0.48
USP54-201ENST00000339859 EIF6P56537 245 aaKnown RBP12.05□□□□□ -0.48
USP54-201ENST00000339859 CPS1P31327 1500 aa12.05□□□□□ -0.48
USP54-201ENST00000339859 OVOS2A0A0G2JMS6 1433 aa12.05□□□□□ -0.48
USP54-201ENST00000339859 OVOS2A0A0J9YW53 1432 aa12.05□□□□□ -0.48
USP54-201ENST00000339859 OVOS2Q6IE36 1432 aa12.05□□□□□ -0.48
USP54-201ENST00000339859 NSFL1CQ9UNZ2 370 aaKnown RBP12.05□□□□□ -0.48
USP54-201ENST00000339859 IGSF1Q8N6C5 1336 aa12.04□□□□□ -0.48
USP54-201ENST00000339859 VAMP4O75379 141 aa12.04□□□□□ -0.48
USP54-201ENST00000339859 NLGN1Q8N2Q7 840 aa12.04□□□□□ -0.48
USP54-201ENST00000339859 WASF1Q92558 559 aa12.04□□□□□ -0.48
USP54-201ENST00000339859 ERBB4Q15303 1308 aa12.04□□□□□ -0.48
USP54-201ENST00000339859 LOC102724428A0A0B4J2F2 783 aa12.04□□□□□ -0.48
USP54-201ENST00000339859 SIK1P57059 783 aa12.04□□□□□ -0.48
USP54-201ENST00000339859 CHL1O00533 1208 aa12.04□□□□□ -0.48
USP54-201ENST00000339859 BLOC1S2Q6QNY1 142 aa12.04□□□□□ -0.48
USP54-201ENST00000339859 WWC2Q6AWC2 1192 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 GGA1Q9UJY5 639 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 A1BGP04217 495 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 EIF4A1P60842 406 aaKnown RBP12.03□□□□□ -0.48
USP54-201ENST00000339859 NUCB2P80303 420 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 DNTTIP2Q5QJE6 756 aaKnown RBP12.03□□□□□ -0.48
USP54-201ENST00000339859 GJD4Q96KN9 370 aaPredicted RBP12.03□□□□□ -0.48
USP54-201ENST00000339859 SEC63Q9UGP8 760 aaKnown RBP12.03□□□□□ -0.48
USP54-201ENST00000339859 RIMBP2O15034 1052 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 PDCP20941 246 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 TNNI2P48788 182 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 ATP8B2P98198 1209 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 PDE4BQ07343 736 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 GOLIM4O00461 696 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 PLCG2P16885 1265 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 CDK5RAP3Q96JB5 506 aa12.03□□□□□ -0.48
USP54-201ENST00000339859 ZFYP08048 801 aaPredicted RBP12.02□□□□□ -0.48
USP54-201ENST00000339859 CRB1P82279 1406 aa12.02□□□□□ -0.48
USP54-201ENST00000339859 IQCA1Q86XH1 822 aa12.02□□□□□ -0.49
USP54-201ENST00000339859 ZNF496Q96IT1 587 aaPredicted RBP12.02□□□□□ -0.49
USP54-201ENST00000339859 KDM4AO75164 1064 aa12.02□□□□□ -0.49
USP54-201ENST00000339859 UFL1O94874 794 aa12.02□□□□□ -0.49
USP54-201ENST00000339859 GPR162Q16538 588 aa12.02□□□□□ -0.49
USP54-201ENST00000339859 NEK4P51957 841 aa12.02□□□□□ -0.49
USP54-201ENST00000339859 CWF19L2Q2TBE0 894 aaKnown RBP12.02□□□□□ -0.49
USP54-201ENST00000339859 FEZ1Q99689 392 aa12.02□□□□□ -0.49
USP54-201ENST00000339859 PDRG1Q9NUG6 133 aa12.02□□□□□ -0.49
USP54-201ENST00000339859 ZNF213O14771 459 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 DPP8Q6V1X1 898 aaPredicted RBP12.01□□□□□ -0.49
USP54-201ENST00000339859 DCCP43146 1447 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 HMGB1P09429 215 aaKnown RBP12.01□□□□□ -0.49
USP54-201ENST00000339859 TXLNAP40222 546 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 CCDC178Q5BJE1 867 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 MSL1Q68DK7 614 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 ZSCAN31Q96LW9 406 aaPredicted RBP12.01□□□□□ -0.49
USP54-201ENST00000339859 PHAXQ9H814 394 aaKnown RBP12.01□□□□□ -0.49
USP54-201ENST00000339859 EHMT1Q9H9B1 1298 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 NOL7Q9UMY1 257 aaKnown RBP12.01□□□□□ -0.49
USP54-201ENST00000339859 CPSF1Q10570 1443 aaKnown RBP12.01□□□□□ -0.49
USP54-201ENST00000339859 MAST3O60307 1309 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 TSPYL6Q8N831 410 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 RHPN1Q8TCX5 695 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 CCDC96Q2M329 555 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 BICD2Q8TD16 824 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 ZNF396Q96N95 335 aaPredicted RBP12.01□□□□□ -0.49
USP54-201ENST00000339859 MEIS3Q99687 375 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 GJA3Q9Y6H8 435 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 ADAMTS13Q76LX8 1427 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 KAT6BQ8WYB5 2073 aa12.01□□□□□ -0.49
USP54-201ENST00000339859 DENND2AQ9ULE3 1009 aa12□□□□□ -0.49
USP54-201ENST00000339859 F8W031 263 aaPredicted RBP12□□□□□ -0.49
USP54-201ENST00000339859 CRKLP46109 303 aaKnown RBP12□□□□□ -0.49
USP54-201ENST00000339859 NAA16Q6N069 864 aaPredicted RBP12□□□□□ -0.49
USP54-201ENST00000339859 ITGA6P23229 1130 aa12□□□□□ -0.49
USP54-201ENST00000339859 VPS72Q15906 364 aa12□□□□□ -0.49
USP54-201ENST00000339859 SKOR2Q2VWA4 1001 aaPredicted RBP12□□□□□ -0.49
USP54-201ENST00000339859 ANKRD20A12PQ8NF67 263 aa12□□□□□ -0.49
USP54-201ENST00000339859 JAKMIP1Q96N16 626 aaKnown RBP12□□□□□ -0.49
USP54-201ENST00000339859 WWC3Q9ULE0 1092 aa12□□□□□ -0.49
USP54-201ENST00000339859 DEPDC5O75140 1603 aa12□□□□□ -0.49
USP54-201ENST00000339859 CYP7A1P22680 504 aa12□□□□□ -0.49
USP54-201ENST00000339859 TMEM132AQ24JP5 1023 aa12□□□□□ -0.49
USP54-201ENST00000339859 RANBP6O60518 1105 aaKnown RBP12□□□□□ -0.49
USP54-201ENST00000339859 ZNF76P36508 570 aa12□□□□□ -0.49
USP54-201ENST00000339859 C2CD5Q86YS7 1000 aa12□□□□□ -0.49
USP54-201ENST00000339859 NIM1KQ8IY84 436 aa12□□□□□ -0.49
USP54-201ENST00000339859 NCAPD2Q15021 1401 aa11.99□□□□□ -0.49
USP54-201ENST00000339859 PES1O00541 588 aaKnown RBP11.99□□□□□ -0.49
USP54-201ENST00000339859 KRT24Q2M2I5 525 aa11.99□□□□□ -0.49
USP54-201ENST00000339859 LARGE2Q8N3Y3 721 aa11.99□□□□□ -0.49
USP54-201ENST00000339859 CUL5Q93034 780 aa11.99□□□□□ -0.49
USP54-201ENST00000339859 MPHOSPH6Q99547 160 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms