RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 USP42Q9H9J4 1324 aaKnown RBP13.23□□□□□ -0.29
RTN3-201ENST00000338850 C4AP0C0L4 1744 aa13.23□□□□□ -0.29
RTN3-201ENST00000338850 SLC39A6Q13433 755 aa13.23□□□□□ -0.29
RTN3-201ENST00000338850 DNAJC10Q8IXB1 793 aa13.23□□□□□ -0.29
RTN3-201ENST00000338850 SRP68Q9UHB9 627 aaKnown RBP13.23□□□□□ -0.29
RTN3-201ENST00000338850 AK9Q5TCS8 1911 aa13.23□□□□□ -0.29
RTN3-201ENST00000338850 KIF13BQ9NQT8 1826 aa13.23□□□□□ -0.29
RTN3-201ENST00000338850 KIAA1551Q9HCM1 1747 aa13.22□□□□□ -0.29
RTN3-201ENST00000338850 GIGYF1O75420 1035 aaPredicted RBP13.22□□□□□ -0.29
RTN3-201ENST00000338850 REC8O95072 547 aa13.22□□□□□ -0.29
RTN3-201ENST00000338850 TGFB2P61812 414 aa13.22□□□□□ -0.29
RTN3-201ENST00000338850 C1orf115Q9H7X2 142 aa13.22□□□□□ -0.29
RTN3-201ENST00000338850 CWC22Q9HCG8 908 aaKnown RBP13.22□□□□□ -0.29
RTN3-201ENST00000338850 CCDC87Q9NVE4 849 aa13.22□□□□□ -0.29
RTN3-201ENST00000338850 PARP3Q9Y6F1 533 aa13.22□□□□□ -0.29
RTN3-201ENST00000338850 KCPQ6ZWJ8 1503 aa13.22□□□□□ -0.29
RTN3-201ENST00000338850 SALL3Q9BXA9 1300 aa13.21□□□□□ -0.29
RTN3-201ENST00000338850 CYP19A1P11511 503 aaPredicted RBP13.21□□□□□ -0.29
RTN3-201ENST00000338850 NUCB2P80303 420 aa13.21□□□□□ -0.29
RTN3-201ENST00000338850 TNPO1Q92973 898 aaKnown RBP13.21□□□□□ -0.29
RTN3-201ENST00000338850 USP26Q9BXU7 913 aa13.21□□□□□ -0.29
RTN3-201ENST00000338850 A0A0G2JLW4 131 aa13.2□□□□□ -0.3
RTN3-201ENST00000338850 GOLGA6L22H0YM25 854 aa13.2□□□□□ -0.3
RTN3-201ENST00000338850 CYP2E1P05181 493 aaPredicted RBP13.2□□□□□ -0.3
RTN3-201ENST00000338850 GNAI3P08754 354 aa13.2□□□□□ -0.3
RTN3-201ENST00000338850 HOXB7P09629 217 aa13.2□□□□□ -0.3
RTN3-201ENST00000338850 DDR1Q08345 913 aa13.2□□□□□ -0.3
RTN3-201ENST00000338850 RTF1Q92541 710 aaKnown RBP13.2□□□□□ -0.3
RTN3-201ENST00000338850 DPEP1P16444 411 aa13.19□□□□□ -0.3
RTN3-201ENST00000338850 MCM2P49736 904 aa13.19□□□□□ -0.3
RTN3-201ENST00000338850 DCTN1Q14203 1278 aa13.19□□□□□ -0.3
RTN3-201ENST00000338850 VSIG10Q8N0Z9 540 aa13.19□□□□□ -0.3
RTN3-201ENST00000338850 SRCIN1Q9C0H9 1055 aa13.19□□□□□ -0.3
RTN3-201ENST00000338850 CEMIPQ8WUJ3 1361 aa13.19□□□□□ -0.3
RTN3-201ENST00000338850 SIPA1L3O60292 1781 aaPredicted RBP13.18□□□□□ -0.3
RTN3-201ENST00000338850 ELL2O00472 640 aaPredicted RBP13.18□□□□□ -0.3
RTN3-201ENST00000338850 XRCC6P12956 609 aaKnown RBP eCLIP13.18□□□□□ -0.3
RTN3-201ENST00000338850 ANAPC15P60006 121 aa13.18□□□□□ -0.3
RTN3-201ENST00000338850 CCDC30Q5VVM6 783 aa13.18□□□□□ -0.3
RTN3-201ENST00000338850 IL17REQ8NFR9 667 aa13.18□□□□□ -0.3
RTN3-201ENST00000338850 BCS1LQ9Y276 419 aa13.18□□□□□ -0.3
RTN3-201ENST00000338850 ZBTB1Q9Y2K1 713 aa13.18□□□□□ -0.3
RTN3-201ENST00000338850 GNAT3A8MTJ3 354 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 POLRMTO00411 1230 aaKnown RBP13.17□□□□□ -0.3
RTN3-201ENST00000338850 ST18O60284 1047 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 GNAI2P04899 355 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 KCNA3P22001 575 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 TM4SF1P30408 202 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 KLHL40Q2TBA0 621 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 USPL1Q5W0Q7 1092 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 MCM10Q7L590 875 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 MEIS3Q99687 375 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 STK31Q9BXU1 1019 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 STAP2Q9UGK3 403 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 TSPYL4Q9UJ04 414 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 COL15A1P39059 1388 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 UBR2Q8IWV8 1755 aa13.17□□□□□ -0.3
RTN3-201ENST00000338850 ERC2O15083 957 aa13.16□□□□□ -0.3
RTN3-201ENST00000338850 ZPR1O75312 459 aa13.16□□□□□ -0.3
RTN3-201ENST00000338850 SDSP20132 328 aa13.16□□□□□ -0.3
RTN3-201ENST00000338850 TEFQ10587 303 aa13.16□□□□□ -0.3
RTN3-201ENST00000338850 GPBP1L1Q9HC44 474 aaPredicted RBP13.16□□□□□ -0.3
RTN3-201ENST00000338850 NARFQ9UHQ1 456 aa13.16□□□□□ -0.3
RTN3-201ENST00000338850 SLC4A2P04920 1241 aa13.15□□□□□ -0.3
RTN3-201ENST00000338850 PDE1AP54750 535 aa13.15□□□□□ -0.3
RTN3-201ENST00000338850 TTC5Q8N0Z6 440 aa13.15□□□□□ -0.3
RTN3-201ENST00000338850 ZNF526Q8TF50 670 aaPredicted RBP13.15□□□□□ -0.3
RTN3-201ENST00000338850 ZNF496Q96IT1 587 aaPredicted RBP13.15□□□□□ -0.3
RTN3-201ENST00000338850 GRPEL1Q9HAV7 217 aa13.15□□□□□ -0.3
RTN3-201ENST00000338850 BCL2L12Q9HB09 334 aa13.15□□□□□ -0.3
RTN3-201ENST00000338850 CD2BP2O95400 341 aaKnown RBP13.14□□□□□ -0.31
RTN3-201ENST00000338850 HSP90AA1P07900 732 aaKnown RBP13.14□□□□□ -0.31
RTN3-201ENST00000338850 ATP8B2P98198 1209 aa13.14□□□□□ -0.31
RTN3-201ENST00000338850 NFIXQ14938 502 aa13.14□□□□□ -0.31
RTN3-201ENST00000338850 ZNF790Q6PG37 636 aa13.14□□□□□ -0.31
RTN3-201ENST00000338850 HEG1Q9ULI3 1381 aa13.14□□□□□ -0.31
RTN3-201ENST00000338850 BRCA1P38398 1863 aaKnown RBP13.13□□□□□ -0.31
RTN3-201ENST00000338850 STARD3NLO95772 234 aa13.13□□□□□ -0.31
RTN3-201ENST00000338850 CLCN1P35523 988 aa13.13□□□□□ -0.31
RTN3-201ENST00000338850 EIF5P55010 431 aaKnown RBP13.13□□□□□ -0.31
RTN3-201ENST00000338850 FLIIQ13045 1269 aa13.13□□□□□ -0.31
RTN3-201ENST00000338850 ARHGAP27Q6ZUM4 889 aa13.13□□□□□ -0.31
RTN3-201ENST00000338850 PIM2Q9P1W9 311 aa13.13□□□□□ -0.31
RTN3-201ENST00000338850 RAB11FIP3O75154 756 aa13.12□□□□□ -0.31
RTN3-201ENST00000338850 BAG4O95429 457 aaKnown RBP13.12□□□□□ -0.31
RTN3-201ENST00000338850 CHRNA5P30532 468 aa13.12□□□□□ -0.31
RTN3-201ENST00000338850 ZNF445P59923 1031 aa13.12□□□□□ -0.31
RTN3-201ENST00000338850 KRT24Q2M2I5 525 aa13.12□□□□□ -0.31
RTN3-201ENST00000338850 INTS4Q96HW7 963 aaKnown RBP13.12□□□□□ -0.31
RTN3-201ENST00000338850 MCCP23508 829 aa13.11□□□□□ -0.31
RTN3-201ENST00000338850 TAF7Q15545 349 aaPredicted RBP13.11□□□□□ -0.31
RTN3-201ENST00000338850 DALRD3Q5D0E6 543 aaKnown RBP13.11□□□□□ -0.31
RTN3-201ENST00000338850 FMNL2Q96PY5 1086 aa13.11□□□□□ -0.31
RTN3-201ENST00000338850 TEX13AQ9BXU3 409 aaPredicted RBP13.11□□□□□ -0.31
RTN3-201ENST00000338850 LRRCC1Q9C099 1032 aa13.11□□□□□ -0.31
RTN3-201ENST00000338850 A0A087WZG4 1122 aa13.1□□□□□ -0.31
RTN3-201ENST00000338850 KIF3CO14782 793 aa13.1□□□□□ -0.31
RTN3-201ENST00000338850 KCNQ3O43525 872 aa13.1□□□□□ -0.31
RTN3-201ENST00000338850 SERPINB2P05120 415 aa13.1□□□□□ -0.31
RTN3-201ENST00000338850 CUL4AQ13619 759 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms