RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PPP1R14CQ8TAE6 165 aa14.51□□□□□ -0.09
SDC3-201ENST00000336798 STX8Q9UNK0 236 aa14.51□□□□□ -0.09
SDC3-201ENST00000336798 CCDC61Q9Y6R9 512 aa14.51□□□□□ -0.09
SDC3-201ENST00000336798 IARSP41252 1262 aaKnown RBP14.51□□□□□ -0.09
SDC3-201ENST00000336798 MAP3K9P80192 1104 aa14.51□□□□□ -0.09
SDC3-201ENST00000336798 SLC52A1Q9NWF4 448 aa14.51□□□□□ -0.09
SDC3-201ENST00000336798 METAP2P50579 478 aaKnown RBP eCLIP14.5□□□□□ -0.092e-7■■□□□ 12.5
SDC3-201ENST00000336798 PPP4R3BQ5MIZ7 849 aa14.5□□□□□ -0.09
SDC3-201ENST00000336798 CTR9Q6PD62 1173 aa14.5□□□□□ -0.09
SDC3-201ENST00000336798 MFSD6Q6ZSS7 791 aa14.5□□□□□ -0.09
SDC3-201ENST00000336798 ATAD2Q6PL18 1390 aa14.5□□□□□ -0.09
SDC3-201ENST00000336798 PLS1Q14651 629 aa14.5□□□□□ -0.09
SDC3-201ENST00000336798 CHRNA2Q15822 529 aa14.5□□□□□ -0.09
SDC3-201ENST00000336798 FAM212AQ96EL1 285 aa14.5□□□□□ -0.09
SDC3-201ENST00000336798 TMEM110-MUSTN1A8MSY1 372 aa14.5□□□□□ -0.09
SDC3-201ENST00000336798 FSD2A1L4K1 749 aa14.5□□□□□ -0.09
SDC3-201ENST00000336798 CCDC175P0C221 793 aa14.5□□□□□ -0.09
SDC3-201ENST00000336798 HMGB1P09429 215 aaKnown RBP14.5□□□□□ -0.09
SDC3-201ENST00000336798 HLA-DOAP06340 250 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 FERP16591 822 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 TSNARE1Q96NA8 513 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 TAOK3Q9H2K8 898 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 LIMCH1Q9UPQ0 1083 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 SSX2IPQ9Y2D8 614 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 PDE4BQ07343 736 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 CCDC174Q6PII3 467 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 KIF21BO75037 1637 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 SMARCA4P51532 1647 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 UBA7P41226 1012 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 RBM26Q5T8P6 1007 aaKnown RBP14.49□□□□□ -0.09
SDC3-201ENST00000336798 UBE3BQ7Z3V4 1068 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 CIZ1Q9ULV3 898 aaPredicted RBP14.49□□□□□ -0.09
SDC3-201ENST00000336798 GTF2F1P35269 517 aaKnown RBP eCLIP14.49□□□□□ -0.09
SDC3-201ENST00000336798 NAIPQ13075 1403 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 AMPD3Q01432 767 aa14.49□□□□□ -0.09
SDC3-201ENST00000336798 SH2B1Q9NRF2 756 aaPredicted RBP14.49□□□□□ -0.09
SDC3-201ENST00000336798 TIGD1Q96MW7 591 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 KIAA1107Q9UPP5 1409 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 TBCAO75347 108 aaKnown RBP14.48□□□□□ -0.09
SDC3-201ENST00000336798 ORC3Q9UBD5 711 aaPredicted RBP14.48□□□□□ -0.09
SDC3-201ENST00000336798 CEBPAP49715 358 aaPredicted RBP14.48□□□□□ -0.09
SDC3-201ENST00000336798 ZSCAN30Q86W11 494 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 TRIM47Q96LD4 638 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 PHACTR2O75167 634 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 HEATR3Q7Z4Q2 680 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 PPM1EQ8WY54 764 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 DDX23Q9BUQ8 820 aaKnown RBP14.48□□□□□ -0.09
SDC3-201ENST00000336798 FAM83GA6ND36 823 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 BAG3O95817 575 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 TSPY3P0CV98 308 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 TSPY8P0CW00 308 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 EXOC1Q9NV70 894 aa14.48□□□□□ -0.09
SDC3-201ENST00000336798 KIF5BP33176 963 aa14.47□□□□□ -0.09
SDC3-201ENST00000336798 HYPKQ9NX55 129 aa14.47□□□□□ -0.09
SDC3-201ENST00000336798 NECAB1Q8N987 351 aa14.47□□□□□ -0.09
SDC3-201ENST00000336798 CWC25Q9NXE8 425 aaPredicted RBP14.47□□□□□ -0.09
SDC3-201ENST00000336798 MRVI1Q9Y6F6 885 aa14.47□□□□□ -0.09
SDC3-201ENST00000336798 IKBKGQ9Y6K9 419 aa14.47□□□□□ -0.09
SDC3-201ENST00000336798 A0A1W2PRG0 241 aa14.47□□□□□ -0.09
SDC3-201ENST00000336798 AMOTQ4VCS5 1084 aa14.47□□□□□ -0.09
SDC3-201ENST00000336798 ARID5AQ03989 594 aa14.47□□□□□ -0.09
SDC3-201ENST00000336798 SMARCC1Q92922 1105 aaPredicted RBP14.47□□□□□ -0.09
SDC3-201ENST00000336798 NBPF6Q5VWK0 638 aa14.47□□□□□ -0.09
SDC3-201ENST00000336798 NBPF5PQ86XG9 351 aaPredicted RBP14.47□□□□□ -0.09
SDC3-201ENST00000336798 CCDC12Q8WUD4 166 aaPredicted RBP14.47□□□□□ -0.09
SDC3-201ENST00000336798 NBPF4Q96M43 638 aa14.47□□□□□ -0.09
SDC3-201ENST00000336798 CDC5LQ99459 802 aaKnown RBP14.47□□□□□ -0.09
SDC3-201ENST00000336798 ZBTB21Q9ULJ3 1066 aa14.46□□□□□ -0.09
SDC3-201ENST00000336798 ACTN2P35609 894 aa14.46□□□□□ -0.09
SDC3-201ENST00000336798 ST5P78524 1137 aa14.46□□□□□ -0.09
SDC3-201ENST00000336798 RRAGBQ5VZM2 374 aa14.46□□□□□ -0.09
SDC3-201ENST00000336798 MCM3P25205 808 aa14.46□□□□□ -0.09
SDC3-201ENST00000336798 TNPO1Q92973 898 aaKnown RBP14.46□□□□□ -0.09
SDC3-201ENST00000336798 EVI5LQ96CN4 794 aa14.46□□□□□ -0.09
SDC3-201ENST00000336798 TCEANC2Q96MN5 208 aa14.46□□□□□ -0.09
SDC3-201ENST00000336798 ADCY5O95622 1261 aa14.46□□□□□ -0.09
SDC3-201ENST00000336798 PTGS1P23219 599 aa14.46□□□□□ -0.09
SDC3-201ENST00000336798 RARSP54136 660 aaKnown RBP14.46□□□□□ -0.09
SDC3-201ENST00000336798 PHF8Q9UPP1 1060 aa14.46□□□□□ -0.09
SDC3-201ENST00000336798 CALM1P0DP23 149 aa14.46□□□□□ -0.1
SDC3-201ENST00000336798 CALM2P0DP24 149 aa14.46□□□□□ -0.1
SDC3-201ENST00000336798 CALM3P0DP25 149 aa14.46□□□□□ -0.1
SDC3-201ENST00000336798 STX1AQ16623 288 aa14.46□□□□□ -0.1
SDC3-201ENST00000336798 NAA15Q9BXJ9 866 aaKnown RBP14.46□□□□□ -0.1
SDC3-201ENST00000336798 HFM1A2PYH4 1435 aa14.46□□□□□ -0.1
SDC3-201ENST00000336798 DBF4Q9UBU7 674 aaPredicted RBP14.45□□□□□ -0.1
SDC3-201ENST00000336798 STX6O43752 255 aa14.45□□□□□ -0.1
SDC3-201ENST00000336798 FLIIQ13045 1269 aa14.45□□□□□ -0.1
SDC3-201ENST00000336798 STXBP4Q6ZWJ1 553 aa14.45□□□□□ -0.1
SDC3-201ENST00000336798 SBNO2Q9Y2G9 1366 aa14.45□□□□□ -0.1
SDC3-201ENST00000336798 FBLN1P23142 703 aa14.45□□□□□ -0.1
SDC3-201ENST00000336798 MXRA7P84157 204 aa14.45□□□□□ -0.1
SDC3-201ENST00000336798 NEK1Q96PY6 1258 aa14.45□□□□□ -0.1
SDC3-201ENST00000336798 KRT28Q7Z3Y7 464 aa14.45□□□□□ -0.1
SDC3-201ENST00000336798 ZNF830Q96NB3 372 aaPredicted RBP14.45□□□□□ -0.1
SDC3-201ENST00000336798 VEZTQ9HBM0 779 aa14.45□□□□□ -0.1
SDC3-201ENST00000336798 AMOTL2Q9Y2J4 779 aa14.45□□□□□ -0.1
SDC3-201ENST00000336798 SP4Q02446 784 aa14.44□□□□□ -0.1
SDC3-201ENST00000336798 SNW1Q13573 536 aaKnown RBP14.44□□□□□ -0.1
SDC3-201ENST00000336798 TTF1Q15361 905 aaPredicted RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms