RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 TOM1L2Q6ZVM7 507 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 UBXN4Q92575 508 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 AKAP2Q9Y2D5 859 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 CCDC171Q6TFL3 1326 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 MARCH6O60337 910 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 CWF19L2Q2TBE0 894 aaKnown RBP17.22■□□□□ 0.35
TCOF1-201ENST00000323668 HSP90B2PQ58FF3 399 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 GPT2Q8TD30 523 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 PALD1Q9ULE6 856 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 SBNO1A3KN83 1393 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 AATKQ6ZMQ8 1374 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 GSDMDP57764 484 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 DDX46Q7L014 1031 aaKnown RBP17.22■□□□□ 0.35
TCOF1-201ENST00000323668 CCDC69A6NI79 296 aa17.21■□□□□ 0.35
TCOF1-201ENST00000323668 ATP5J2-PTCD1G3V325 749 aa17.21■□□□□ 0.35
TCOF1-201ENST00000323668 PTCD1O75127 700 aaKnown RBP17.21■□□□□ 0.35
TCOF1-201ENST00000323668 NACAP1Q9BZK3 213 aa17.21■□□□□ 0.35
TCOF1-201ENST00000323668 OSBPL3Q9H4L5 887 aa17.21■□□□□ 0.35
TCOF1-201ENST00000323668 ANKRD24Q8TF21 1146 aa17.21■□□□□ 0.35
TCOF1-201ENST00000323668 JARID2Q92833 1246 aaPredicted RBP17.21■□□□□ 0.35
TCOF1-201ENST00000323668 PAXBP1Q9Y5B6 917 aa17.21■□□□□ 0.35
TCOF1-201ENST00000323668 LRRC2Q9BYS8 371 aa17.21■□□□□ 0.34
TCOF1-201ENST00000323668 CGNQ9P2M7 1197 aaKnown RBP17.21■□□□□ 0.34
TCOF1-201ENST00000323668 PLEKHG3A1L390 1219 aa17.2■□□□□ 0.34
TCOF1-201ENST00000323668 IDH1O75874 414 aaKnown RBP17.2■□□□□ 0.34
TCOF1-201ENST00000323668 USP44Q9H0E7 712 aa17.2■□□□□ 0.34
TCOF1-201ENST00000323668 DNAJC25Q9H1X3 360 aa17.2■□□□□ 0.34
TCOF1-201ENST00000323668 IBTKQ9P2D0 1353 aaPredicted RBP17.2■□□□□ 0.34
TCOF1-201ENST00000323668 SLC3A2P08195 630 aaKnown RBP17.2■□□□□ 0.34
TCOF1-201ENST00000323668 COPS6Q7L5N1 327 aa17.2■□□□□ 0.34
TCOF1-201ENST00000323668 ACBD3Q9H3P7 528 aa17.2■□□□□ 0.34
TCOF1-201ENST00000323668 XAGE3Q8WTP9 111 aa17.2■□□□□ 0.34
TCOF1-201ENST00000323668 PPFIA3O75145 1194 aa17.19■□□□□ 0.34
TCOF1-201ENST00000323668 NBPF7P0C2Y1 421 aaPredicted RBP17.19■□□□□ 0.34
TCOF1-201ENST00000323668 CHAMP1Q96JM3 812 aa17.19■□□□□ 0.34
TCOF1-201ENST00000323668 ZNF500O60304 480 aaPredicted RBP17.19■□□□□ 0.34
TCOF1-201ENST00000323668 PPFIBP1Q86W92 1011 aa17.19■□□□□ 0.34
TCOF1-201ENST00000323668 SMARCE1Q969G3 411 aa17.19■□□□□ 0.34
TCOF1-201ENST00000323668 CDC42BPBQ9Y5S2 1711 aa17.19■□□□□ 0.34
TCOF1-201ENST00000323668 MCMDC2Q4G0Z9 681 aa17.19■□□□□ 0.34
TCOF1-201ENST00000323668 Q6ZUG5 572 aa17.19■□□□□ 0.34
TCOF1-201ENST00000323668 TTLL5Q6EMB2 1281 aa17.19■□□□□ 0.34
TCOF1-201ENST00000323668 SSH3Q8TE77 659 aa17.19■□□□□ 0.34
TCOF1-201ENST00000323668 HOXB7P09629 217 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 AMOTL1Q8IY63 956 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 STK11IPQ8N1F8 1099 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 GOLGA8BA8MQT2 603 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 ZNF213O14771 459 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 SNRPA1P09661 255 aaKnown RBP17.18■□□□□ 0.34
TCOF1-201ENST00000323668 NOC3LQ8WTT2 800 aaKnown RBP17.18■□□□□ 0.34
TCOF1-201ENST00000323668 SIRT1Q96EB6 747 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 FAM177BA6PVY3 158 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 PIBF1Q8WXW3 757 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 PRDM11Q9NQV5 511 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 ORC3Q9UBD5 711 aaPredicted RBP17.18■□□□□ 0.34
TCOF1-201ENST00000323668 CEP135Q66GS9 1140 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 USP16Q9Y5T5 823 aa17.18■□□□□ 0.34
TCOF1-201ENST00000323668 PTCH1Q13635 1447 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 SSH2Q76I76 1423 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 BIN1O00499 593 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 PTGS1P23219 599 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 METTL24Q5JXM2 366 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 IFNL2Q8IZJ0 200 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 EFCAB6Q5THR3 1501 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 FAM135BQ49AJ0 1406 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 SPDYE4A6NLX3 237 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 LUZP1Q86V48 1076 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 WASF1Q92558 559 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 STRN4Q9NRL3 753 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 POLR3DP05423 398 aaPredicted RBP17.17■□□□□ 0.34
TCOF1-201ENST00000323668 NUP133Q8WUM0 1156 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 LRRC59Q96AG4 307 aaKnown RBP17.17■□□□□ 0.34
TCOF1-201ENST00000323668 MLH3Q9UHC1 1453 aa17.17■□□□□ 0.34
TCOF1-201ENST00000323668 SKILP12757 684 aa17.16■□□□□ 0.34
TCOF1-201ENST00000323668 PIP4K2AP48426 406 aaPredicted RBP17.16■□□□□ 0.34
TCOF1-201ENST00000323668 SLC39A6Q13433 755 aa17.16■□□□□ 0.34
TCOF1-201ENST00000323668 AIDAQ96BJ3 306 aa17.16■□□□□ 0.34
TCOF1-201ENST00000323668 TMC6Q7Z403 805 aa17.16■□□□□ 0.34
TCOF1-201ENST00000323668 SNRKQ9NRH2 765 aa17.16■□□□□ 0.34
TCOF1-201ENST00000323668 STAP2Q9UGK3 403 aa17.16■□□□□ 0.34
TCOF1-201ENST00000323668 ARHGEF10O15013 1369 aa17.15■□□□□ 0.34
TCOF1-201ENST00000323668 ZCCHC11Q5TAX3 1644 aaKnown RBP17.15■□□□□ 0.34
TCOF1-201ENST00000323668 ZSCAN12O43309 604 aa17.15■□□□□ 0.34
TCOF1-201ENST00000323668 FAM173BQ6P4H8 233 aa17.15■□□□□ 0.34
TCOF1-201ENST00000323668 IP6K1Q92551 441 aa17.15■□□□□ 0.34
TCOF1-201ENST00000323668 NOL10Q9BSC4 688 aaKnown RBP17.15■□□□□ 0.34
TCOF1-201ENST00000323668 TOP1P11387 765 aaKnown RBP17.15■□□□□ 0.34
TCOF1-201ENST00000323668 HAND2P61296 217 aa17.15■□□□□ 0.34
TCOF1-201ENST00000323668 NEO1Q92859 1461 aa17.15■□□□□ 0.34
TCOF1-201ENST00000323668 MPHOSPH8Q99549 860 aa17.15■□□□□ 0.34
TCOF1-201ENST00000323668 TBX22Q9Y458 520 aa17.15■□□□□ 0.34
TCOF1-201ENST00000323668 ATP7BP35670 1465 aa17.15■□□□□ 0.34
TCOF1-201ENST00000323668 TDO2P48775 406 aa17.14■□□□□ 0.34
TCOF1-201ENST00000323668 TMCO3Q6UWJ1 677 aa17.14■□□□□ 0.34
TCOF1-201ENST00000323668 TM6SF1Q9BZW5 370 aa17.14■□□□□ 0.34
TCOF1-201ENST00000323668 URI1O94763 535 aaPredicted RBP17.14■□□□□ 0.33
TCOF1-201ENST00000323668 IFIT5Q13325 482 aaKnown RBP17.14■□□□□ 0.33
TCOF1-201ENST00000323668 BICC1Q9H694 974 aaKnown RBP17.14■□□□□ 0.33
TCOF1-201ENST00000323668 CUL4AQ13619 759 aa17.14■□□□□ 0.33
TCOF1-201ENST00000323668 LMBR1LQ6UX01 489 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms