RNA–Protein interactions for RNA: ENST00000322507.12

COL12A1-201, Transcript of collagen type XII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL12A1, Length 11,723 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-201ENST00000322507 STARD3NLO95772 234 aa11.12□□□□□ -0.63
COL12A1-201ENST00000322507 IGHMBP2P38935 993 aaKnown RBP11.12□□□□□ -0.63
COL12A1-201ENST00000322507 BUB1BO60566 1050 aaPredicted RBP11.12□□□□□ -0.63
COL12A1-201ENST00000322507 SETDB1Q15047 1291 aa11.12□□□□□ -0.63
COL12A1-201ENST00000322507 TRERF1Q96PN7 1200 aa11.12□□□□□ -0.63
COL12A1-201ENST00000322507 SESN3P58005 492 aa11.12□□□□□ -0.63
COL12A1-201ENST00000322507 TRAF1Q13077 416 aa11.12□□□□□ -0.63
COL12A1-201ENST00000322507 KLHL34Q8N239 644 aa11.12□□□□□ -0.63
COL12A1-201ENST00000322507 CCDC171Q6TFL3 1326 aa11.12□□□□□ -0.63
COL12A1-201ENST00000322507 BRPF1P55201 1214 aaPredicted RBP11.12□□□□□ -0.63
COL12A1-201ENST00000322507 WDR97A6NE52 1622 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 ARAP1Q96P48 1450 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 SPATS2Q86XZ4 545 aaKnown RBP11.11□□□□□ -0.63
COL12A1-201ENST00000322507 PDE1CQ14123 709 aaPredicted RBP11.11□□□□□ -0.63
COL12A1-201ENST00000322507 CABP4P57796 275 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 RAD54L2Q9Y4B4 1467 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 IFI16Q16666 785 aaKnown RBP11.11□□□□□ -0.63
COL12A1-201ENST00000322507 GBP5Q96PP8 586 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 MCM4P33991 863 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 GABPB1Q06547 395 aaPredicted RBP11.11□□□□□ -0.63
COL12A1-201ENST00000322507 HMG20BQ9P0W2 317 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 PRXQ9BXM0 1461 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 POTEB3A0JP26 581 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 VIMP08670 466 aaKnown RBP11.11□□□□□ -0.63
COL12A1-201ENST00000322507 AMPD3Q01432 767 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 POTEBQ6S5H4 581 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 STMN2Q93045 179 aa11.11□□□□□ -0.63
COL12A1-201ENST00000322507 SEC62Q99442 399 aaKnown RBP11.11□□□□□ -0.63
COL12A1-201ENST00000322507 GGNBP2Q9H3C7 697 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 TMOD2Q9NZR1 351 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 BMP15O95972 392 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 CABP2Q9NPB3 220 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 PCF11O94913 1555 aaKnown RBP11.1□□□□□ -0.63
COL12A1-201ENST00000322507 NUCB1Q02818 461 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 SERPINI2O75830 405 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 AACSQ86V21 672 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 NESP48681 1621 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 SRGAP3O43295 1099 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 ARHGAP25P42331 645 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 CFAP100Q494V2 611 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 AIDAQ96BJ3 306 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 A0A087WZG4 1122 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 PCK1P35558 622 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 OPA1O60313 960 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 ZFXP17010 805 aaPredicted RBP11.1□□□□□ -0.63
COL12A1-201ENST00000322507 FAM69CQ0P6D2 419 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 SLC4A8Q2Y0W8 1093 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 WWC3Q9ULE0 1092 aa11.1□□□□□ -0.63
COL12A1-201ENST00000322507 CLIP2Q9UDT6 1046 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 RSPH14Q9UHP6 348 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 PRG4Q92954 1404 aaPredicted RBP11.09□□□□□ -0.63
COL12A1-201ENST00000322507 TUBBP07437 444 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 PAFAH1B1P43034 410 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 TOPBP1Q92547 1522 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 SKILP12757 684 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 NAA16Q6N069 864 aaPredicted RBP11.09□□□□□ -0.63
COL12A1-201ENST00000322507 VCX3AQ9NNX9 186 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 CALCOCO2Q13137 446 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 NFE2L2Q16236 605 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 LRRC43Q8N309 656 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.09□□□□□ -0.63
COL12A1-201ENST00000322507 TTF1Q15361 905 aaPredicted RBP11.09□□□□□ -0.63
COL12A1-201ENST00000322507 TRIM60Q495X7 471 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 USP37Q86T82 979 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 TTC21BQ7Z4L5 1316 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 ZKSCAN8Q15776 578 aaPredicted RBP11.09□□□□□ -0.63
COL12A1-201ENST00000322507 LARP1Q6PKG0 1096 aaKnown RBP11.09□□□□□ -0.63
COL12A1-201ENST00000322507 DDX19AQ9NUU7 478 aaKnown RBP11.09□□□□□ -0.63
COL12A1-201ENST00000322507 GNAT3A8MTJ3 354 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 HSF2BPO75031 334 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 EXOSC9Q06265 439 aaKnown RBP11.09□□□□□ -0.63
COL12A1-201ENST00000322507 TEX2Q8IWB9 1127 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 ARFGAP3Q9NP61 516 aa11.09□□□□□ -0.63
COL12A1-201ENST00000322507 LRPPRCP42704 1394 aaKnown RBP11.08□□□□□ -0.63
COL12A1-201ENST00000322507 LCA5Q86VQ0 697 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 LARSQ9P2J5 1176 aaKnown RBP11.08□□□□□ -0.64
COL12A1-201ENST00000322507 CIB2O75838 187 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 SMC1BQ8NDV3 1235 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 KIF5AQ12840 1032 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 ANAPC15P60006 121 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 CCDC178Q5BJE1 867 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 MPHOSPH6Q99547 160 aaKnown RBP11.08□□□□□ -0.64
COL12A1-201ENST00000322507 CAMSAP2Q08AD1 1489 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 BTBD11A6QL63 1104 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 FOSBP53539 338 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 ZNF530Q6P9A1 599 aaPredicted RBP11.08□□□□□ -0.64
COL12A1-201ENST00000322507 SPC24Q8NBT2 197 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 YEATS4O95619 227 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 PRPHP41219 470 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 OGFRQ9NZT2 677 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 CASTP20810 708 aaKnown RBP11.08□□□□□ -0.64
COL12A1-201ENST00000322507 RSPH3Q86UC2 560 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 IQCA1Q86XH1 822 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 DAAM1Q9Y4D1 1078 aa11.08□□□□□ -0.64
COL12A1-201ENST00000322507 BIVM-ERCC5R4GMW8 1640 aa11.07□□□□□ -0.64
COL12A1-201ENST00000322507 ERCC3P19447 782 aa11.07□□□□□ -0.64
COL12A1-201ENST00000322507 CTCFLQ8NI51 663 aaPredicted RBP11.07□□□□□ -0.64
COL12A1-201ENST00000322507 LRRC45Q96CN5 670 aa11.07□□□□□ -0.64
COL12A1-201ENST00000322507 MAGI1Q96QZ7 1491 aaPredicted RBP11.07□□□□□ -0.64
COL12A1-201ENST00000322507 PSMC4P43686 418 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms