RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NACAP1Q9BZK3 213 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 NUCKS1Q9H1E3 243 aaKnown RBP6.03□□□□□ -1.44
SCN1A-201ENST00000303395 ANKS4BQ8N8V4 417 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 TSGA10Q9BZW7 698 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 XRCC6P12956 609 aaKnown RBP eCLIP6.02□□□□□ -1.45
SCN1A-201ENST00000303395 SLC20A2Q08357 652 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 CFAP58Q5T655 872 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 MRFAP1L1Q96HT8 127 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 SBNO1A3KN83 1393 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 TRIM37O94972 964 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 LUC7L3O95232 432 aaKnown RBP6.02□□□□□ -1.45
SCN1A-201ENST00000303395 MPNDQ8N594 471 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 FANCAO15360 1455 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 MBD5Q9P267 1494 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 SHROOM2Q13796 1616 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 GIGYF1O75420 1035 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-201ENST00000303395 ANKRD27Q96NW4 1050 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 PLEKHG2Q9H7P9 1386 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 MATR3P43243 847 aaKnown RBP eCLIP6.02□□□□□ -1.451e-10■■■■■ 37.8
SCN1A-201ENST00000303395 NOLC1Q14978 699 aaKnown RBP eCLIP6.02□□□□□ -1.45
SCN1A-201ENST00000303395 TMTC2Q8N394 836 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 MED14O60244 1454 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 EBAG9O00559 213 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 PPFIA4O75335 1185 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 GDAP1L1Q96MZ0 367 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 TTC12Q9H892 705 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-201ENST00000303395 MICAL3Q7RTP6 2002 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 KRT83P78385 493 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 IFT74Q96LB3 600 aa6.02□□□□□ -1.45
SCN1A-201ENST00000303395 YEATS4O95619 227 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 KRT18P05783 430 aaKnown RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 ATP6V1E1P36543 226 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 PAFAH1B1P43034 410 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 POGZQ7Z3K3 1410 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 MPHOSPH10O00566 681 aaKnown RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 PPP1R12BO60237 982 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 PPFIA1Q13136 1202 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 KIF4BQ2VIQ3 1234 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 DAAM2Q86T65 1068 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 CNGA4Q8IV77 575 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 RNF14Q9UBS8 474 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 TBC1D2BQ9UPU7 963 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 ABCC10Q5T3U5 1492 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 TTC21AQ8NDW8 1320 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 SLC8A1P32418 973 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 SMARCC1Q92922 1105 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 TTF2Q9UNY4 1162 aaKnown RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 PSDA5PKW4 1024 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 ATP5DP30049 168 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 TWISTNBQ3B726 338 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 HDXQ7Z353 690 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 HOMEZQ8IX15 550 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 ZMYND15Q9H091 742 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 RNF41Q9H4P4 317 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 KDM5CP41229 1560 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 RIMS2Q9UQ26 1411 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 HSPA4P34932 840 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 TEFQ10587 303 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 GOLGA1Q92805 767 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 KCNH8Q96L42 1107 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 NAP1L3Q99457 506 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 DNAI1Q9UI46 699 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 PIK3R4Q99570 1358 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 C6orf163Q5TEZ5 329 aa6.01□□□□□ -1.45
SCN1A-201ENST00000303395 SREK1Q8WXA9 508 aaKnown RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 NOC2LQ9Y3T9 749 aaKnown RBP6.01□□□□□ -1.45
SCN1A-201ENST00000303395 ALDH1L1O75891 902 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 ARID4AP29374 1257 aaPredicted RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 NAP1L4Q99733 375 aaKnown RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 KIAA1210Q9ULL0 1709 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 CEP135Q66GS9 1140 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 CCDC12Q8WUD4 166 aaPredicted RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 EVI5LQ96CN4 794 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 LRRC45Q96CN5 670 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 C9orf78Q9NZ63 289 aaPredicted RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 CCDC6Q16204 474 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 LARP1BQ659C4 914 aaKnown RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 NOL8Q76FK4 1167 aaKnown RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 CCHCR1Q8TD31 782 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 JAKMIP2Q96AA8 810 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 FERMT1Q9BQL6 677 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 DAAM1Q9Y4D1 1078 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 TRIML1Q8N9V2 468 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 VTI1AQ96AJ9 217 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 SIRT1Q96EB6 747 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 RSRC1Q96IZ7 334 aaKnown RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 ITGB1BP2Q9UKP3 347 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 SNW1Q13573 536 aaKnown RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 LMBR1Q8WVP7 490 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 CENPHQ9H3R5 247 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 VPS37CA5D8V6 355 aaPredicted RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6□□□□□ -1.45
SCN1A-201ENST00000303395 ZC3H15Q8WU90 426 aaKnown RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 VAV2P52735 878 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 MAP2K1Q02750 393 aaPredicted RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 NBPF9Q3BBW0 867 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 C8orf34Q49A92 452 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 C1orf141Q5JVX7 400 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 TTC22Q5TAA0 569 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 TAF4BQ92750 862 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms