RNA–Protein interactions for RNA: ENST00000289448.2

HMHB1-201, Transcript of histocompatibility minor HB-1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HMHB1, Length 384 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMHB1-201ENST00000289448 ZNF277Q9NRM2 450 aaPredicted RBP12.46□□□□□ -0.41
HMHB1-201ENST00000289448 MBIPQ9NS73 344 aa12.46□□□□□ -0.41
HMHB1-201ENST00000289448 CHPF2Q9P2E5 772 aa12.46□□□□□ -0.41
HMHB1-201ENST00000289448 CACNA1SQ13698 1873 aa12.46□□□□□ -0.42
HMHB1-201ENST00000289448 SNED1Q8TER0 1413 aa12.45□□□□□ -0.42
HMHB1-201ENST00000289448 DDNO94850 711 aaPredicted RBP12.45□□□□□ -0.42
HMHB1-201ENST00000289448 ALDH1B1P30837 517 aa12.45□□□□□ -0.42
HMHB1-201ENST00000289448 HOXA10P31260 410 aaPredicted RBP12.45□□□□□ -0.42
HMHB1-201ENST00000289448 PARP10Q53GL7 1025 aa12.45□□□□□ -0.42
HMHB1-201ENST00000289448 SYNE4Q8N205 404 aa12.45□□□□□ -0.42
HMHB1-201ENST00000289448 RIC1Q4ADV7 1423 aa12.45□□□□□ -0.42
HMHB1-201ENST00000289448 SLC10A5Q5PT55 438 aa12.44□□□□□ -0.42
HMHB1-201ENST00000289448 HDGFL1Q5TGJ6 251 aa12.44□□□□□ -0.42
HMHB1-201ENST00000289448 DUSP27Q5VZP5 1158 aa12.44□□□□□ -0.42
HMHB1-201ENST00000289448 DPY19L2Q6NUT2 758 aa12.44□□□□□ -0.42
HMHB1-201ENST00000289448 PPP1R42Q7Z4L9 355 aa12.44□□□□□ -0.42
HMHB1-201ENST00000289448 NLRP10Q86W26 655 aa12.44□□□□□ -0.42
HMHB1-201ENST00000289448 RTKN2Q8IZC4 609 aa12.44□□□□□ -0.42
HMHB1-201ENST00000289448 ZNF428Q96B54 188 aa12.44□□□□□ -0.42
HMHB1-201ENST00000289448 UTP14AQ9BVJ6 771 aaKnown RBP12.44□□□□□ -0.42
HMHB1-201ENST00000289448 DICER1Q9UPY3 1922 aaKnown RBP12.43□□□□□ -0.42
HMHB1-201ENST00000289448 HOXB7P09629 217 aa12.43□□□□□ -0.42
HMHB1-201ENST00000289448 TCIRG1Q13488 830 aa12.43□□□□□ -0.42
HMHB1-201ENST00000289448 SMC1BQ8NDV3 1235 aa12.43□□□□□ -0.42
HMHB1-201ENST00000289448 CRAMP1Q96RY5 1269 aa12.43□□□□□ -0.42
HMHB1-201ENST00000289448 WDR90Q96KV7 1748 aa12.42□□□□□ -0.42
HMHB1-201ENST00000289448 ZNF541Q9H0D2 1346 aa12.42□□□□□ -0.42
HMHB1-201ENST00000289448 HCLS1P14317 486 aaPredicted RBP12.42□□□□□ -0.42
HMHB1-201ENST00000289448 RPGRQ92834 1020 aaKnown RBP12.42□□□□□ -0.42
HMHB1-201ENST00000289448 RBM17Q96I25 401 aaKnown RBP12.42□□□□□ -0.42
HMHB1-201ENST00000289448 IFT57Q9NWB7 429 aa12.42□□□□□ -0.42
HMHB1-201ENST00000289448 ELL2O00472 640 aaPredicted RBP12.41□□□□□ -0.42
HMHB1-201ENST00000289448 TCERG1O14776 1098 aaKnown RBP12.41□□□□□ -0.42
HMHB1-201ENST00000289448 POTEIP0CG38 1075 aa12.41□□□□□ -0.42
HMHB1-201ENST00000289448 POTEJP0CG39 1038 aa12.41□□□□□ -0.42
HMHB1-201ENST00000289448 IARSP41252 1262 aaKnown RBP12.41□□□□□ -0.42
HMHB1-201ENST00000289448 HSP90AB3PQ58FF7 597 aa12.41□□□□□ -0.42
HMHB1-201ENST00000289448 PLBD2Q8NHP8 589 aa12.41□□□□□ -0.42
HMHB1-201ENST00000289448 NLRP3Q96P20 1036 aa12.41□□□□□ -0.42
HMHB1-201ENST00000289448 PSMD1Q99460 953 aa12.41□□□□□ -0.42
HMHB1-201ENST00000289448 DBF4Q9UBU7 674 aaPredicted RBP12.41□□□□□ -0.42
HMHB1-201ENST00000289448 FZD9O00144 591 aa12.4□□□□□ -0.42
HMHB1-201ENST00000289448 PPEF1O14829 653 aaPredicted RBP12.4□□□□□ -0.42
HMHB1-201ENST00000289448 ANKRD13DQ6ZTN6 518 aa12.4□□□□□ -0.42
HMHB1-201ENST00000289448 C8orf58Q8NAV2 365 aa12.4□□□□□ -0.42
HMHB1-201ENST00000289448 L3MBTL3Q96JM7 780 aaPredicted RBP12.4□□□□□ -0.42
HMHB1-201ENST00000289448 ISCA1Q9BUE6 129 aa12.4□□□□□ -0.42
HMHB1-201ENST00000289448 TRMT112Q9UI30 125 aaKnown RBP12.4□□□□□ -0.42
HMHB1-201ENST00000289448 COL4A5P29400 1685 aa12.4□□□□□ -0.42
HMHB1-201ENST00000289448 ABCC4O15439 1325 aa12.39□□□□□ -0.43
HMHB1-201ENST00000289448 ATP5J2-PTCD1G3V325 749 aa12.39□□□□□ -0.43
HMHB1-201ENST00000289448 GNAI1P63096 354 aa12.39□□□□□ -0.43
HMHB1-201ENST00000289448 CC2D2BQ6DHV5 1058 aa12.39□□□□□ -0.43
HMHB1-201ENST00000289448 PHAXQ9H814 394 aaKnown RBP12.39□□□□□ -0.43
HMHB1-201ENST00000289448 HYPKQ9NX55 129 aa12.39□□□□□ -0.43
HMHB1-201ENST00000289448 RNF123Q5XPI4 1314 aa12.38□□□□□ -0.43
HMHB1-201ENST00000289448 SH3TC1Q8TE82 1336 aa12.38□□□□□ -0.43
HMHB1-201ENST00000289448 ZNF316A6NFI3 1004 aaPredicted RBP12.38□□□□□ -0.43
HMHB1-201ENST00000289448 TSPYL6Q8N831 410 aa12.38□□□□□ -0.43
HMHB1-201ENST00000289448 TAF1DQ9H5J8 278 aaPredicted RBP12.38□□□□□ -0.43
HMHB1-201ENST00000289448 ATP6V0A2Q9Y487 856 aa12.38□□□□□ -0.43
HMHB1-201ENST00000289448 CALD1Q05682 793 aaKnown RBP12.37□□□□□ -0.43
HMHB1-201ENST00000289448 TSR2Q969E8 191 aaKnown RBP12.37□□□□□ -0.43
HMHB1-201ENST00000289448 KLRG1Q96E93 195 aa12.37□□□□□ -0.43
HMHB1-201ENST00000289448 FAM89AQ96GI7 184 aa12.37□□□□□ -0.43
HMHB1-201ENST00000289448 ANKRD36CQ5JPF3 1778 aa12.36□□□□□ -0.43
HMHB1-201ENST00000289448 TRIM28Q13263 835 aaKnown RBP12.36□□□□□ -0.43
HMHB1-201ENST00000289448 GRIPAP1Q4V328 841 aa12.36□□□□□ -0.43
HMHB1-201ENST00000289448 CHADLQ6NUI6 762 aa12.36□□□□□ -0.43
HMHB1-201ENST00000289448 WWC1Q8IX03 1113 aa12.36□□□□□ -0.43
HMHB1-201ENST00000289448 JDP2Q8WYK2 163 aa12.36□□□□□ -0.43
HMHB1-201ENST00000289448 IQCA1LA6NCM1 817 aa12.35□□□□□ -0.43
HMHB1-201ENST00000289448 BBOX1O75936 387 aa12.35□□□□□ -0.43
HMHB1-201ENST00000289448 GRAPQ13588 217 aa12.35□□□□□ -0.43
HMHB1-201ENST00000289448 AOC3Q16853 763 aa12.35□□□□□ -0.43
HMHB1-201ENST00000289448 RTL5Q5HYW3 569 aaPredicted RBP12.35□□□□□ -0.43
HMHB1-201ENST00000289448 DDX46Q7L014 1031 aaKnown RBP12.35□□□□□ -0.43
HMHB1-201ENST00000289448 GPC2Q8N158 579 aa12.35□□□□□ -0.43
HMHB1-201ENST00000289448 LARGE2Q8N3Y3 721 aa12.35□□□□□ -0.43
HMHB1-201ENST00000289448 GRAPLQ8TC17 118 aaPredicted RBP12.35□□□□□ -0.43
HMHB1-201ENST00000289448 RTFDC1Q9BY42 306 aaPredicted RBP12.35□□□□□ -0.43
HMHB1-201ENST00000289448 MRS2Q9HD23 443 aa12.35□□□□□ -0.43
HMHB1-201ENST00000289448 LAMB2P55268 1798 aa12.34□□□□□ -0.43
HMHB1-201ENST00000289448 SF3B3Q15393 1217 aaKnown RBP12.34□□□□□ -0.43
HMHB1-201ENST00000289448 CCDC27Q2M243 656 aa12.34□□□□□ -0.43
HMHB1-201ENST00000289448 RIC3Q7Z5B4 369 aa12.34□□□□□ -0.43
HMHB1-201ENST00000289448 LDHDQ86WU2 507 aa12.34□□□□□ -0.43
HMHB1-201ENST00000289448 SP8Q8IXZ3 490 aa12.34□□□□□ -0.43
HMHB1-201ENST00000289448 JMYQ8N9B5 988 aa12.34□□□□□ -0.43
HMHB1-201ENST00000289448 HACL1Q9UJ83 578 aa12.34□□□□□ -0.43
HMHB1-201ENST00000289448 GJA3Q9Y6H8 435 aa12.34□□□□□ -0.43
HMHB1-201ENST00000289448 COL4A1P02462 1669 aa12.34□□□□□ -0.43
HMHB1-201ENST00000289448 PPIP5K2O43314 1243 aa12.33□□□□□ -0.44
HMHB1-201ENST00000289448 EPHX2P34913 555 aa12.33□□□□□ -0.44
HMHB1-201ENST00000289448 EIF6P56537 245 aaKnown RBP12.33□□□□□ -0.44
HMHB1-201ENST00000289448 GOLGA2Q08379 1002 aa12.33□□□□□ -0.44
HMHB1-201ENST00000289448 EAPPQ56P03 285 aaPredicted RBP12.33□□□□□ -0.44
HMHB1-201ENST00000289448 DPP8Q6V1X1 898 aaPredicted RBP12.33□□□□□ -0.44
HMHB1-201ENST00000289448 CELF1Q92879 486 aaKnown RBP12.33□□□□□ -0.44
HMHB1-201ENST00000289448 MYD88Q99836 296 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms