RNA–Protein interactions for RNA: ENST00000263741.11

SDF4-201, Transcript of stromal cell derived factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDF4, Length 2,079 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-201ENST00000263741 SLC4A10Q6U841 1118 aa23.34■■□□□ 1.33
SDF4-201ENST00000263741 SYNE4Q8N205 404 aa23.34■■□□□ 1.33
SDF4-201ENST00000263741 FRAT1Q92837 279 aaPredicted RBP23.34■■□□□ 1.33
SDF4-201ENST00000263741 TNNQ9UQP3 1299 aa23.34■■□□□ 1.33
SDF4-201ENST00000263741 DLEC1Q9Y238 1755 aa23.34■■□□□ 1.33
SDF4-201ENST00000263741 BRCA1P38398 1863 aaKnown RBP23.34■■□□□ 1.33
SDF4-201ENST00000263741 PTPRCP08575 1304 aa23.33■■□□□ 1.33
SDF4-201ENST00000263741 JARID2Q92833 1246 aaPredicted RBP23.33■■□□□ 1.33
SDF4-201ENST00000263741 WWC3Q9ULE0 1092 aa23.33■■□□□ 1.33
SDF4-201ENST00000263741 ERFEQ4G0M1 354 aa23.32■■□□□ 1.32
SDF4-201ENST00000263741 PARP10Q53GL7 1025 aa23.32■■□□□ 1.32
SDF4-201ENST00000263741 KIF16BQ96L93 1317 aa23.32■■□□□ 1.32
SDF4-201ENST00000263741 NEXNQ0ZGT2 675 aa23.32■■□□□ 1.32
SDF4-201ENST00000263741 PXDNLA1KZ92 1463 aa23.32■■□□□ 1.32
SDF4-201ENST00000263741 GTF2E1P29083 439 aaPredicted RBP23.31■■□□□ 1.32
SDF4-201ENST00000263741 SYT17Q9BSW7 474 aa23.31■■□□□ 1.32
SDF4-201ENST00000263741 UTP14AQ9BVJ6 771 aaKnown RBP23.31■■□□□ 1.32
SDF4-201ENST00000263741 RCAN3Q9UKA8 241 aa23.31■■□□□ 1.32
SDF4-201ENST00000263741 IBTKQ9P2D0 1353 aaPredicted RBP23.31■■□□□ 1.32
SDF4-201ENST00000263741 BRPF1P55201 1214 aaPredicted RBP23.31■■□□□ 1.32
SDF4-201ENST00000263741 TPTE2Q6XPS3 522 aa23.31■■□□□ 1.32
SDF4-201ENST00000263741 TRMT112Q9UI30 125 aaKnown RBP23.31■■□□□ 1.32
SDF4-201ENST00000263741 MYH3P11055 1940 aa23.3■■□□□ 1.32
SDF4-201ENST00000263741 NEURL1BA8MQ27 555 aa23.3■■□□□ 1.32
SDF4-201ENST00000263741 ST5P78524 1137 aa23.3■■□□□ 1.32
SDF4-201ENST00000263741 PPP1R42Q7Z4L9 355 aa23.3■■□□□ 1.32
SDF4-201ENST00000263741 TAF1P21675 1872 aa23.29■■□□□ 1.32
SDF4-201ENST00000263741 FAM89AQ96GI7 184 aa23.29■■□□□ 1.32
SDF4-201ENST00000263741 NYXQ9GZU5 481 aa23.29■■□□□ 1.32
SDF4-201ENST00000263741 CWC25Q9NXE8 425 aaPredicted RBP23.29■■□□□ 1.32
SDF4-201ENST00000263741 CHRNA5P30532 468 aa23.29■■□□□ 1.32
SDF4-201ENST00000263741 BEND3Q5T5X7 828 aa23.29■■□□□ 1.32
SDF4-201ENST00000263741 CD2APQ9Y5K6 639 aa23.29■■□□□ 1.32
SDF4-201ENST00000263741 TRIM28Q13263 835 aaKnown RBP23.28■■□□□ 1.32
SDF4-201ENST00000263741 CCDC191Q8NCU4 936 aa23.28■■□□□ 1.32
SDF4-201ENST00000263741 LINS1Q8NG48 757 aa23.28■■□□□ 1.32
SDF4-201ENST00000263741 A0A0G2JLW4 131 aa23.27■■□□□ 1.32
SDF4-201ENST00000263741 HCLS1P14317 486 aaPredicted RBP23.27■■□□□ 1.32
SDF4-201ENST00000263741 TRIM27P14373 513 aa23.27■■□□□ 1.32
SDF4-201ENST00000263741 CLUAP1Q96AJ1 413 aa23.27■■□□□ 1.32
SDF4-201ENST00000263741 C3orf67Q6ZVT6 689 aa23.26■■□□□ 1.31
SDF4-201ENST00000263741 SH3TC1Q8TE82 1336 aa23.26■■□□□ 1.31
SDF4-201ENST00000263741 UTRNP46939 3433 aa23.26■■□□□ 1.31
SDF4-201ENST00000263741 DPEP1P16444 411 aa23.25■■□□□ 1.31
SDF4-201ENST00000263741 API5Q9BZZ5 524 aaKnown RBP23.25■■□□□ 1.31
SDF4-201ENST00000263741 GCKRQ14397 625 aa23.24■■□□□ 1.31
SDF4-201ENST00000263741 ATF7IPQ6VMQ6 1270 aa23.24■■□□□ 1.31
SDF4-201ENST00000263741 BRIP1Q9BX63 1249 aa23.24■■□□□ 1.31
SDF4-201ENST00000263741 UBE3BQ7Z3V4 1068 aa23.24■■□□□ 1.31
SDF4-201ENST00000263741 SRCIN1Q9C0H9 1055 aa23.24■■□□□ 1.31
SDF4-201ENST00000263741 PLIN1O60240 522 aa23.23■■□□□ 1.31
SDF4-201ENST00000263741 C2CD5Q86YS7 1000 aa23.23■■□□□ 1.31
SDF4-201ENST00000263741 ZBTB38Q8NAP3 1195 aaPredicted RBP23.23■■□□□ 1.31
SDF4-201ENST00000263741 ZKSCAN2Q63HK3 967 aa23.23■■□□□ 1.31
SDF4-201ENST00000263741 ABCC4O15439 1325 aa23.23■■□□□ 1.31
SDF4-201ENST00000263741 SPEF2Q9C093 1822 aa23.22■■□□□ 1.31
SDF4-201ENST00000263741 IPO8O15397 1037 aaKnown RBP23.21■■□□□ 1.31
SDF4-201ENST00000263741 PCCAP05165 728 aaPredicted RBP23.21■■□□□ 1.31
SDF4-201ENST00000263741 ARHGAP45Q92619 1136 aa23.21■■□□□ 1.31
SDF4-201ENST00000263741 RNF123Q5XPI4 1314 aa23.21■■□□□ 1.31
SDF4-201ENST00000263741 COL4A1P02462 1669 aa23.21■■□□□ 1.31
SDF4-201ENST00000263741 RIC1Q4ADV7 1423 aa23.21■■□□□ 1.31
SDF4-201ENST00000263741 SLX4Q8IY92 1834 aa23.21■■□□□ 1.31
SDF4-201ENST00000263741 IRS4O14654 1257 aaPredicted RBP23.21■■□□□ 1.31
SDF4-201ENST00000263741 KCNA3P22001 575 aa23.21■■□□□ 1.31
SDF4-201ENST00000263741 PDE6BP35913 854 aa23.21■■□□□ 1.31
SDF4-201ENST00000263741 TGFB2P61812 414 aa23.2■■□□□ 1.3
SDF4-201ENST00000263741 RLBP1P12271 317 aa23.2■■□□□ 1.3
SDF4-201ENST00000263741 ALDH1L1O75891 902 aa23.19■■□□□ 1.3
SDF4-201ENST00000263741 ARFGEF1Q9Y6D6 1849 aa23.19■■□□□ 1.3
SDF4-201ENST00000263741 H0YIN7 160 aa23.18■■□□□ 1.3
SDF4-201ENST00000263741 SLC10A5Q5PT55 438 aa23.18■■□□□ 1.3
SDF4-201ENST00000263741 H7C1W4 665 aa23.18■■□□□ 1.3
SDF4-201ENST00000263741 GRM8O00222 908 aa23.18■■□□□ 1.3
SDF4-201ENST00000263741 CASP7P55210 303 aa23.18■■□□□ 1.3
SDF4-201ENST00000263741 ZNF622Q969S3 477 aaKnown RBP eCLIP23.18■■□□□ 1.33e-8■■■□□ 17.8
SDF4-201ENST00000263741 CCDC85AQ96PX6 553 aaPredicted RBP23.18■■□□□ 1.3
SDF4-201ENST00000263741 C9orf78Q9NZ63 289 aaPredicted RBP23.18■■□□□ 1.3
SDF4-201ENST00000263741 SUPT16HQ9Y5B9 1047 aaKnown RBP23.18■■□□□ 1.3
SDF4-201ENST00000263741 NBPF7P0C2Y1 421 aaPredicted RBP23.17■■□□□ 1.3
SDF4-201ENST00000263741 SRGNP10124 158 aa23.17■■□□□ 1.3
SDF4-201ENST00000263741 TMEM57Q8N5G2 664 aa23.17■■□□□ 1.3
SDF4-201ENST00000263741 PANK1Q8TE04 598 aa23.17■■□□□ 1.3
SDF4-201ENST00000263741 FTSJ3Q8IY81 847 aaKnown RBP23.17■■□□□ 1.3
SDF4-201ENST00000263741 NLRP3Q96P20 1036 aa23.17■■□□□ 1.3
SDF4-201ENST00000263741 CDHR2Q9BYE9 1310 aa23.16■■□□□ 1.3
SDF4-201ENST00000263741 CCT4P50991 539 aaKnown RBP23.16■■□□□ 1.3
SDF4-201ENST00000263741 KLRG2A4D1S0 409 aaPredicted RBP23.15■■□□□ 1.3
SDF4-201ENST00000263741 CRY2Q49AN0 593 aa23.15■■□□□ 1.3
SDF4-201ENST00000263741 SLC51AQ86UW1 340 aa23.15■■□□□ 1.3
SDF4-201ENST00000263741 DZIP1LQ8IYY4 767 aaKnown RBP23.15■■□□□ 1.3
SDF4-201ENST00000263741 INTS3Q68E01 1043 aaKnown RBP23.14■■□□□ 1.29
SDF4-201ENST00000263741 USP44Q9H0E7 712 aa23.14■■□□□ 1.29
SDF4-201ENST00000263741 C20orf194Q5TEA3 1177 aa23.13■■□□□ 1.29
SDF4-201ENST00000263741 RPGRQ92834 1020 aaKnown RBP23.13■■□□□ 1.29
SDF4-201ENST00000263741 BCS1LQ9Y276 419 aa23.13■■□□□ 1.29
SDF4-201ENST00000263741 YBX3P16989 372 aaKnown RBP eCLIP23.13■■□□□ 1.29
SDF4-201ENST00000263741 MASTLQ96GX5 879 aa23.13■■□□□ 1.29
SDF4-201ENST00000263741 MEIS3Q99687 375 aa23.13■■□□□ 1.29
SDF4-201ENST00000263741 PIM2Q9P1W9 311 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms