RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 USP5P45974 858 aa7.85□□□□□ -1.15
CCDC54-201ENST00000261058 NFX1Q12986 1120 aaKnown RBP7.85□□□□□ -1.15
CCDC54-201ENST00000261058 NPAS4Q8IUM7 802 aa7.85□□□□□ -1.15
CCDC54-201ENST00000261058 NANOS1Q8WY41 292 aaKnown RBP7.85□□□□□ -1.15
CCDC54-201ENST00000261058 NEUROD4Q9HD90 331 aa7.85□□□□□ -1.15
CCDC54-201ENST00000261058 POLIQ9UNA4 740 aa7.85□□□□□ -1.15
CCDC54-201ENST00000261058 PCDHGC4Q9Y5F7 938 aa7.85□□□□□ -1.15
CCDC54-201ENST00000261058 WIPF1O43516 503 aa7.84□□□□□ -1.15
CCDC54-201ENST00000261058 RIPOR1Q6ZS17 1223 aa7.84□□□□□ -1.15
CCDC54-201ENST00000261058 TMC7Q7Z402 723 aa7.84□□□□□ -1.15
CCDC54-201ENST00000261058 EDEM1Q92611 657 aa7.84□□□□□ -1.15
CCDC54-201ENST00000261058 KCNMB2Q9Y691 235 aa7.84□□□□□ -1.15
CCDC54-201ENST00000261058 ATXN7O15265 892 aaPredicted RBP7.83□□□□□ -1.16
CCDC54-201ENST00000261058 EGFRP00533 1210 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 INSM1Q01101 510 aaPredicted RBP7.83□□□□□ -1.16
CCDC54-201ENST00000261058 TNP2Q05952 138 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 LAMC2Q13753 1193 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 COL19A1Q14993 1142 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 GPR152Q8TDT2 470 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 ALKBH8Q96BT7 664 aaKnown RBP7.83□□□□□ -1.16
CCDC54-201ENST00000261058 BRD7Q9NPI1 651 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 STK17AQ9UEE5 414 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 RTCBQ9Y3I0 505 aaKnown RBP7.83□□□□□ -1.16
CCDC54-201ENST00000261058 GJA3Q9Y6H8 435 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 ANKRD33BA6NCL7 494 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 TREHO43280 583 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 BNIP3LO60238 219 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 RPLP1P05386 114 aaKnown RBP7.82□□□□□ -1.16
CCDC54-201ENST00000261058 DNM1Q05193 864 aaKnown RBP7.82□□□□□ -1.16
CCDC54-201ENST00000261058 DSC3Q14574 896 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 TRIP4Q15650 581 aaPredicted RBP7.82□□□□□ -1.16
CCDC54-201ENST00000261058 ZSCAN29Q8IWY8 852 aaPredicted RBP7.82□□□□□ -1.16
CCDC54-201ENST00000261058 PIK3R5Q8WYR1 880 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 NUDT16Q96DE0 195 aaKnown RBP7.82□□□□□ -1.16
CCDC54-201ENST00000261058 DMRTB1Q96MA1 342 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 CEP63Q96MT8 703 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 AMOTL2Q9Y2J4 779 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 GPR182O15218 404 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 EPB42P16452 691 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 PDE3BQ13370 1112 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 XKR5Q6UX68 686 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 NPAS3Q8IXF0 933 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 GGNBP2Q9H3C7 697 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 TERTO14746 1132 aaKnown RBP7.8□□□□□ -1.16
CCDC54-201ENST00000261058 MAPTP10636 758 aaKnown RBP7.8□□□□□ -1.16
CCDC54-201ENST00000261058 FMR1Q06787 632 aaKnown RBP eCLIP7.8□□□□□ -1.16
CCDC54-201ENST00000261058 AAMPQ13685 434 aa7.8□□□□□ -1.16
CCDC54-201ENST00000261058 ATXN7L1Q9ULK2 861 aaPredicted RBP7.8□□□□□ -1.16
CCDC54-201ENST00000261058 EHHADHQ08426 723 aa7.79□□□□□ -1.16
CCDC54-201ENST00000261058 FAM182BQ5T319 152 aa7.79□□□□□ -1.16
CCDC54-201ENST00000261058 CFHR5Q9BXR6 569 aa7.79□□□□□ -1.16
CCDC54-201ENST00000261058 STRN4Q9NRL3 753 aa7.79□□□□□ -1.16
CCDC54-201ENST00000261058 NXF1Q9UBU9 619 aaKnown RBP7.79□□□□□ -1.16
CCDC54-201ENST00000261058 USP20Q9Y2K6 914 aa7.79□□□□□ -1.16
CCDC54-201ENST00000261058 DCDC2BA2VCK2 349 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 PCSK2P16519 638 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 SFSWAPQ12872 951 aaKnown RBP7.78□□□□□ -1.16
CCDC54-201ENST00000261058 PDE12Q6L8Q7 609 aaKnown RBP7.78□□□□□ -1.16
CCDC54-201ENST00000261058 FBXO33Q7Z6M2 555 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 GTPBP3Q969Y2 492 aaKnown RBP7.78□□□□□ -1.16
CCDC54-201ENST00000261058 KCNH4Q9UQ05 1017 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 VSIG8P0DPA2 414 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 ABHD17AQ96GS6 310 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 GSX2Q9BZM3 304 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 FNDC3AQ9Y2H6 1198 aaKnown RBP7.78□□□□□ -1.16
CCDC54-201ENST00000261058 RBM47A0AV96 593 aaKnown RBP7.77□□□□□ -1.17
CCDC54-201ENST00000261058 H3BM21 787 aa7.77□□□□□ -1.17
CCDC54-201ENST00000261058 KHNYNO15037 678 aaKnown RBP7.77□□□□□ -1.17
CCDC54-201ENST00000261058 CMTR1Q8N1G2 835 aaKnown RBP7.77□□□□□ -1.17
CCDC54-201ENST00000261058 EFCC1Q9HA90 598 aa7.77□□□□□ -1.17
CCDC54-201ENST00000261058 MARK1Q9P0L2 795 aa7.77□□□□□ -1.17
CCDC54-201ENST00000261058 XYLBO75191 536 aa7.76□□□□□ -1.17
CCDC54-201ENST00000261058 SV2AQ7L0J3 742 aa7.76□□□□□ -1.17
CCDC54-201ENST00000261058 VWA5B2Q8N398 1253 aa7.76□□□□□ -1.17
CCDC54-201ENST00000261058 SLC16A10Q8TF71 515 aa7.76□□□□□ -1.17
CCDC54-201ENST00000261058 FOXD4L4Q8WXT5 416 aaPredicted RBP7.76□□□□□ -1.17
CCDC54-201ENST00000261058 PHF24Q9UPV7 400 aa7.76□□□□□ -1.17
CCDC54-201ENST00000261058 A6NHS1 94 aa7.75□□□□□ -1.17
CCDC54-201ENST00000261058 UBAP1LF5GYI3 381 aa7.75□□□□□ -1.17
CCDC54-201ENST00000261058 P4HBP07237 508 aaKnown RBP7.75□□□□□ -1.17
CCDC54-201ENST00000261058 FGFR3P22607 806 aa7.75□□□□□ -1.17
CCDC54-201ENST00000261058 GRIN2CQ14957 1233 aa7.75□□□□□ -1.17
CCDC54-201ENST00000261058 TNFRSF21O75509 655 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 CCINQ13939 588 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 GAS6Q14393 721 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 C8orf34Q49A92 452 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 TRERF1Q96PN7 1200 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 ELP3Q9H9T3 547 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 CDC14CA4D256 554 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 CD33P20138 364 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 PLCB3Q01970 1234 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 SPEM2Q0P670 501 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 ENOX2Q16206 610 aaKnown RBP7.73□□□□□ -1.17
CCDC54-201ENST00000261058 FOXR1Q6PIV2 292 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 NLRP13Q86W25 1043 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 TMC1Q8TDI8 760 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 SLC30A3Q99726 388 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 NIF3L1Q9GZT8 377 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 TMEM63CQ9P1W3 806 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 LOC100996750A0A140TA64 210 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms