RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 ATP6V1AP38606 617 aa21.58■■□□□ 1.05
SMARCC1-201ENST00000254480 LUZP1Q86V48 1076 aa21.58■■□□□ 1.05
SMARCC1-201ENST00000254480 C14orf93Q9H972 538 aaKnown RBP21.58■■□□□ 1.05
SMARCC1-201ENST00000254480 JAG2Q9Y219 1238 aa21.58■■□□□ 1.05
SMARCC1-201ENST00000254480 PIK3R4Q99570 1358 aa21.58■■□□□ 1.05
SMARCC1-201ENST00000254480 CBX1P83916 185 aa21.58■■□□□ 1.04
SMARCC1-201ENST00000254480 SBNO2Q9Y2G9 1366 aa21.58■■□□□ 1.04
SMARCC1-201ENST00000254480 CCDC40Q4G0X9 1142 aa21.58■■□□□ 1.04
SMARCC1-201ENST00000254480 TTC21BQ7Z4L5 1316 aa21.58■■□□□ 1.04
SMARCC1-201ENST00000254480 ANAPC15P60006 121 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 GSTTP1A0A1W2PQM5 241 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 DYDC1Q8WWB3 177 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 KLF18A0A0U1RQI7 1052 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 SDSP20132 328 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 GIMAP6Q6P9H5 292 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 C8orf58Q8NAV2 365 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 NCOA7Q8NI08 942 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 ZSWIM4Q9H7M6 989 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 PDE4BQ07343 736 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 PRPF4BQ13523 1007 aaKnown RBP21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 TTF1Q15361 905 aaPredicted RBP21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 CHST3Q7LGC8 479 aa21.57■■□□□ 1.04
SMARCC1-201ENST00000254480 TMCO3Q6UWJ1 677 aa21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 SLF2Q8IX21 1173 aa21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 PHAXQ9H814 394 aaKnown RBP21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 PUF60Q9UHX1 559 aaKnown RBP21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 AFMP43652 599 aa21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 SCAF11Q99590 1463 aaKnown RBP21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 ZSCAN12O43309 604 aa21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 CYP7A1P22680 504 aa21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 KRT24Q2M2I5 525 aa21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 TMCO5BA8MYB1 307 aa21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 ZBTB9Q96C00 473 aa21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 CALML4Q96GE6 196 aa21.56■■□□□ 1.04
SMARCC1-201ENST00000254480 TCP11L1Q9NUJ3 509 aa21.55■■□□□ 1.04
SMARCC1-201ENST00000254480 POLR3GO15318 223 aaPredicted RBP21.55■■□□□ 1.04
SMARCC1-201ENST00000254480 PPM1FP49593 454 aaPredicted RBP21.55■■□□□ 1.04
SMARCC1-201ENST00000254480 HELBQ8NG08 1087 aaPredicted RBP21.55■■□□□ 1.04
SMARCC1-201ENST00000254480 BAG3O95817 575 aa21.55■■□□□ 1.04
SMARCC1-201ENST00000254480 BAG4O95429 457 aaKnown RBP21.55■■□□□ 1.04
SMARCC1-201ENST00000254480 ADCY5O95622 1261 aa21.55■■□□□ 1.04
SMARCC1-201ENST00000254480 LMBR1LQ6UX01 489 aa21.55■■□□□ 1.04
SMARCC1-201ENST00000254480 SYCP3Q8IZU3 236 aa21.55■■□□□ 1.04
SMARCC1-201ENST00000254480 SLC4A4Q9Y6R1 1079 aa21.55■■□□□ 1.04
SMARCC1-201ENST00000254480 KAT6BQ8WYB5 2073 aa21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 UBA7P41226 1012 aa21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 TTC16Q8NEE8 873 aa21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 KIF18AQ8NI77 898 aa21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 C8orf37Q96NL8 207 aa21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 MYO1BO43795 1136 aa21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 CALRP27797 417 aaKnown RBP21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 ZCRB1Q8TBF4 217 aaKnown RBP21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 CABP5Q9NP86 173 aa21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 EZRP15311 586 aaKnown RBP21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 PCDHB15Q9Y5E8 787 aa21.54■■□□□ 1.04
SMARCC1-201ENST00000254480 ZNF830Q96NB3 372 aaPredicted RBP21.53■■□□□ 1.04
SMARCC1-201ENST00000254480 PSMD1Q99460 953 aa21.53■■□□□ 1.04
SMARCC1-201ENST00000254480 BMP2KLQ5H9B9 411 aa21.53■■□□□ 1.04
SMARCC1-201ENST00000254480 VPS36Q86VN1 386 aa21.53■■□□□ 1.04
SMARCC1-201ENST00000254480 NCOA1Q15788 1441 aa21.53■■□□□ 1.04
SMARCC1-201ENST00000254480 KIF5BP33176 963 aa21.53■■□□□ 1.04
SMARCC1-201ENST00000254480 CETN2P41208 172 aa21.53■■□□□ 1.04
SMARCC1-201ENST00000254480 PRC1O43663 620 aa21.53■■□□□ 1.04
SMARCC1-201ENST00000254480 TSPY3P0CV98 308 aa21.53■■□□□ 1.04
SMARCC1-201ENST00000254480 TSPY8P0CW00 308 aa21.53■■□□□ 1.04
SMARCC1-201ENST00000254480 YEATS4O95619 227 aa21.52■■□□□ 1.04
SMARCC1-201ENST00000254480 NOP2P46087 812 aaKnown RBP21.52■■□□□ 1.04
SMARCC1-201ENST00000254480 FANCAO15360 1455 aa21.52■■□□□ 1.04
SMARCC1-201ENST00000254480 IFFO1Q0D2I5 559 aa21.52■■□□□ 1.04
SMARCC1-201ENST00000254480 CCDC152Q4G0S7 254 aa21.52■■□□□ 1.04
SMARCC1-201ENST00000254480 TMX3Q96JJ7 454 aa21.52■■□□□ 1.04
SMARCC1-201ENST00000254480 GOLGA6L7A0A1B0GV03 622 aa21.52■■□□□ 1.04
SMARCC1-201ENST00000254480 PDIA4P13667 645 aaKnown RBP21.52■■□□□ 1.04
SMARCC1-201ENST00000254480 CNPY2Q9Y2B0 182 aa21.52■■□□□ 1.04
SMARCC1-201ENST00000254480 WTAPQ15007 396 aa21.52■■□□□ 1.04
SMARCC1-201ENST00000254480 HLA-DOAP06340 250 aa21.52■■□□□ 1.03
SMARCC1-201ENST00000254480 TRIM21P19474 475 aaKnown RBP21.52■■□□□ 1.03
SMARCC1-201ENST00000254480 HEATR3Q7Z4Q2 680 aa21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 RNF216Q9NWF9 866 aaPredicted RBP21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 HCLS1P14317 486 aaPredicted RBP21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 MARCKSP29966 332 aaPredicted RBP21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 TEX13AQ9BXU3 409 aaPredicted RBP21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 ZNF165P49910 485 aa21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 ST5P78524 1137 aa21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 CRNKL1Q9BZJ0 848 aaKnown RBP21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 NIP7Q9Y221 180 aaKnown RBP eCLIP21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 LDHCP07864 332 aa21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 CTNNA2P26232 953 aa21.51■■□□□ 1.03
SMARCC1-201ENST00000254480 UBE4AQ14139 1066 aa21.5■■□□□ 1.03
SMARCC1-201ENST00000254480 STX1AQ16623 288 aa21.5■■□□□ 1.03
SMARCC1-201ENST00000254480 ATP2B3Q16720 1220 aa21.5■■□□□ 1.03
SMARCC1-201ENST00000254480 CWF19L2Q2TBE0 894 aaKnown RBP21.5■■□□□ 1.03
SMARCC1-201ENST00000254480 MCM5P33992 734 aa21.5■■□□□ 1.03
SMARCC1-201ENST00000254480 SETDB2Q96T68 719 aa21.5■■□□□ 1.03
SMARCC1-201ENST00000254480 RBM8AQ9Y5S9 174 aaKnown RBP21.5■■□□□ 1.03
SMARCC1-201ENST00000254480 HLTFQ14527 1009 aaKnown RBP eCLIP21.5■■□□□ 1.031e-9■■□□□ 11.6
SMARCC1-201ENST00000254480 NFATC2IPQ8NCF5 419 aa21.5■■□□□ 1.03
SMARCC1-201ENST00000254480 DDX19AQ9NUU7 478 aaKnown RBP21.5■■□□□ 1.03
SMARCC1-201ENST00000254480 PLEKHH1Q9ULM0 1364 aa21.49■■□□□ 1.03
SMARCC1-201ENST00000254480 MAP2K1Q02750 393 aaPredicted RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms