RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 MSNP26038 577 aaKnown RBP24.98■■□□□ 1.59
SNX3-201ENST00000230085 TJP1Q07157 1748 aa24.97■■□□□ 1.59
SNX3-201ENST00000230085 ELL2O00472 640 aaPredicted RBP24.97■■□□□ 1.59
SNX3-201ENST00000230085 KLHL34Q8N239 644 aa24.97■■□□□ 1.59
SNX3-201ENST00000230085 EPB41L2O43491 1005 aaKnown RBP24.96■■□□□ 1.59
SNX3-201ENST00000230085 KIAA1211Q6ZU35 1233 aa24.96■■□□□ 1.59
SNX3-201ENST00000230085 C5P01031 1676 aa24.95■■□□□ 1.59
SNX3-201ENST00000230085 MBD3O95983 291 aa24.95■■□□□ 1.59
SNX3-201ENST00000230085 SDSP20132 328 aa24.95■■□□□ 1.59
SNX3-201ENST00000230085 MCTP1Q6DN14 999 aa24.95■■□□□ 1.59
SNX3-201ENST00000230085 MAP7D2Q96T17 732 aa24.95■■□□□ 1.59
SNX3-201ENST00000230085 FOXD4L1Q9NU39 408 aa24.95■■□□□ 1.59
SNX3-201ENST00000230085 NUP188Q5SRE5 1749 aa24.95■■□□□ 1.59
SNX3-201ENST00000230085 CYP19A1P11511 503 aaPredicted RBP24.95■■□□□ 1.58
SNX3-201ENST00000230085 TEX13AQ9BXU3 409 aaPredicted RBP24.94■■□□□ 1.58
SNX3-201ENST00000230085 ERC2O15083 957 aa24.93■■□□□ 1.58
SNX3-201ENST00000230085 ZDHHC9Q9Y397 364 aa24.93■■□□□ 1.58
SNX3-201ENST00000230085 COL5A3P25940 1745 aaPredicted RBP24.93■■□□□ 1.58
SNX3-201ENST00000230085 LRSAM1Q6UWE0 723 aa24.93■■□□□ 1.58
SNX3-201ENST00000230085 MYH14Q7Z406 1995 aaKnown RBP24.92■■□□□ 1.58
SNX3-201ENST00000230085 CICQ96RK0 1608 aaPredicted RBP24.92■■□□□ 1.58
SNX3-201ENST00000230085 STARD3NLO95772 234 aa24.92■■□□□ 1.58
SNX3-201ENST00000230085 CRKLP46109 303 aaKnown RBP24.92■■□□□ 1.58
SNX3-201ENST00000230085 CAVIN1Q6NZI2 390 aaKnown RBP24.92■■□□□ 1.58
SNX3-201ENST00000230085 C4BP0C0L5 1744 aa24.91■■□□□ 1.58
SNX3-201ENST00000230085 EIF2S2P20042 333 aaKnown RBP24.91■■□□□ 1.58
SNX3-201ENST00000230085 ANAPC15P60006 121 aa24.91■■□□□ 1.58
SNX3-201ENST00000230085 CUL4AQ13619 759 aa24.91■■□□□ 1.58
SNX3-201ENST00000230085 ZNF827Q17R98 1081 aa24.91■■□□□ 1.58
SNX3-201ENST00000230085 CSPP1Q1MSJ5 1256 aa24.91■■□□□ 1.58
SNX3-201ENST00000230085 INTS4Q96HW7 963 aaKnown RBP24.91■■□□□ 1.58
SNX3-201ENST00000230085 RBSNQ9H1K0 784 aa24.91■■□□□ 1.58
SNX3-201ENST00000230085 CACNA1FO60840 1977 aa24.91■■□□□ 1.58
SNX3-201ENST00000230085 HMMRO75330 724 aa24.9■■□□□ 1.58
SNX3-201ENST00000230085 INTS5Q6P9B9 1019 aaKnown RBP24.9■■□□□ 1.58
SNX3-201ENST00000230085 AKT1S1Q96B36 256 aa24.9■■□□□ 1.58
SNX3-201ENST00000230085 A1BGP04217 495 aa24.9■■□□□ 1.58
SNX3-201ENST00000230085 GPT2Q8TD30 523 aa24.9■■□□□ 1.58
SNX3-201ENST00000230085 NECTIN2Q92692 538 aa24.9■■□□□ 1.58
SNX3-201ENST00000230085 ZKSCAN5Q9Y2L8 839 aa24.9■■□□□ 1.58
SNX3-201ENST00000230085 PIP4K2AP48426 406 aaPredicted RBP24.89■■□□□ 1.57
SNX3-201ENST00000230085 SMIM5Q71RC9 77 aa24.89■■□□□ 1.57
SNX3-201ENST00000230085 SALL3Q9BXA9 1300 aa24.88■■□□□ 1.57
SNX3-201ENST00000230085 CNTNAP4Q9C0A0 1308 aa24.88■■□□□ 1.57
SNX3-201ENST00000230085 AMIGO3Q86WK7 504 aa24.88■■□□□ 1.57
SNX3-201ENST00000230085 AK7Q96M32 723 aa24.88■■□□□ 1.57
SNX3-201ENST00000230085 HMGB2P26583 209 aaKnown RBP24.88■■□□□ 1.57
SNX3-201ENST00000230085 SLC15A2Q16348 729 aa24.88■■□□□ 1.57
SNX3-201ENST00000230085 RC3H1Q5TC82 1133 aaKnown RBP24.88■■□□□ 1.57
SNX3-201ENST00000230085 NBPF14Q5TI25 921 aa24.88■■□□□ 1.57
SNX3-201ENST00000230085 CCDC87Q9NVE4 849 aa24.88■■□□□ 1.57
SNX3-201ENST00000230085 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.88■■□□□ 1.57
SNX3-201ENST00000230085 ZBTB1Q9Y2K1 713 aa24.88■■□□□ 1.57
SNX3-201ENST00000230085 HOXB7P09629 217 aa24.87■■□□□ 1.57
SNX3-201ENST00000230085 TFCP2L1Q9NZI6 479 aa24.87■■□□□ 1.57
SNX3-201ENST00000230085 GNPATO15228 680 aa24.86■■□□□ 1.57
SNX3-201ENST00000230085 BRD1O95696 1058 aa24.86■■□□□ 1.57
SNX3-201ENST00000230085 C16orf71Q8IYS4 520 aaPredicted RBP24.86■■□□□ 1.57
SNX3-201ENST00000230085 STK32BQ9NY57 414 aa24.86■■□□□ 1.57
SNX3-201ENST00000230085 LAMB4A4D0S4 1761 aa24.86■■□□□ 1.57
SNX3-201ENST00000230085 PKP1Q13835 747 aa24.85■■□□□ 1.57
SNX3-201ENST00000230085 HDGFL1Q5TGJ6 251 aa24.85■■□□□ 1.57
SNX3-201ENST00000230085 MTERF4Q7Z6M4 381 aaKnown RBP24.85■■□□□ 1.57
SNX3-201ENST00000230085 CCDC39Q9UFE4 941 aa24.85■■□□□ 1.57
SNX3-201ENST00000230085 NBPF26B4DH59 902 aa24.84■■□□□ 1.57
SNX3-201ENST00000230085 NBPF10Q6P3W6 841 aaKnown RBP24.84■■□□□ 1.57
SNX3-201ENST00000230085 NBPF15Q8N660 670 aa24.84■■□□□ 1.57
SNX3-201ENST00000230085 ZGPATQ8N5A5 531 aaKnown RBP24.83■■□□□ 1.57
SNX3-201ENST00000230085 OTUD7AQ8TE49 926 aaPredicted RBP24.83■■□□□ 1.57
SNX3-201ENST00000230085 PRPF40AO75400 957 aaKnown RBP24.82■■□□□ 1.56
SNX3-201ENST00000230085 RPS6KA4O75676 772 aa24.82■■□□□ 1.56
SNX3-201ENST00000230085 PHF14O94880 888 aa24.82■■□□□ 1.56
SNX3-201ENST00000230085 CCT4P50991 539 aaKnown RBP24.82■■□□□ 1.56
SNX3-201ENST00000230085 TMEM63CQ9P1W3 806 aa24.82■■□□□ 1.56
SNX3-201ENST00000230085 RTCBQ9Y3I0 505 aaKnown RBP24.82■■□□□ 1.56
SNX3-201ENST00000230085 AOX1Q06278 1338 aa24.82■■□□□ 1.56
SNX3-201ENST00000230085 UBR3Q6ZT12 1888 aa24.82■■□□□ 1.56
SNX3-201ENST00000230085 PDE1AP54750 535 aa24.82■■□□□ 1.56
SNX3-201ENST00000230085 PDIA6Q15084 440 aa24.82■■□□□ 1.56
SNX3-201ENST00000230085 ZNF330Q9Y3S2 320 aaPredicted RBP24.82■■□□□ 1.56
SNX3-201ENST00000230085 SOS1Q07889 1333 aaPredicted RBP24.81■■□□□ 1.56
SNX3-201ENST00000230085 ANXA1P04083 346 aa24.81■■□□□ 1.56
SNX3-201ENST00000230085 MYL6BP14649 208 aa24.81■■□□□ 1.56
SNX3-201ENST00000230085 CHPF2Q9P2E5 772 aa24.81■■□□□ 1.56
SNX3-201ENST00000230085 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.8■■□□□ 1.56
SNX3-201ENST00000230085 R3HDM1Q15032 1099 aaKnown RBP24.8■■□□□ 1.56
SNX3-201ENST00000230085 PROSER3Q2NL68 480 aa24.8■■□□□ 1.56
SNX3-201ENST00000230085 SYAP1Q96A49 352 aaPredicted RBP24.8■■□□□ 1.56
SNX3-201ENST00000230085 TMX3Q96JJ7 454 aa24.8■■□□□ 1.56
SNX3-201ENST00000230085 PNPLA7Q6ZV29 1317 aa24.79■■□□□ 1.56
SNX3-201ENST00000230085 PXDNLA1KZ92 1463 aa24.79■■□□□ 1.56
SNX3-201ENST00000230085 EIF5P55010 431 aaKnown RBP24.79■■□□□ 1.56
SNX3-201ENST00000230085 CCDC30Q5VVM6 783 aa24.79■■□□□ 1.56
SNX3-201ENST00000230085 MEIS3Q99687 375 aa24.79■■□□□ 1.56
SNX3-201ENST00000230085 PSDA5PKW4 1024 aaPredicted RBP24.78■■□□□ 1.56
SNX3-201ENST00000230085 DYNC1I1O14576 645 aa24.78■■□□□ 1.56
SNX3-201ENST00000230085 IL6STP40189 918 aaPredicted RBP24.78■■□□□ 1.56
SNX3-201ENST00000230085 PDGFDQ9GZP0 370 aaPredicted RBP24.78■■□□□ 1.56
SNX3-201ENST00000230085 STAP2Q9UGK3 403 aa24.78■■□□□ 1.56
SNX3-201ENST00000230085 MCCP23508 829 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms